Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0631 | ATGGGAATGGCTGCTGCAGAAGCTCAGTTTCATGTTTTAGCTGTTGATGACAGCATCATTGATAGGAAATTAATTGAAAGACTTCTCAAGACATCTTCTTATCATGTTACTGCTGTGGATTCTGGTAGCAAAGCTTTGGAATTGCTTGGCTTGGTTGAGCAAAATCAAAGAAATGGAAACACCCCTTCTGTGTCTCCACACAATCATCATCAGGAGATTGAAGTTAATATGATCATTACAGATTACTGCATGCCTGGAATGACAGGCTTTGATCTTTTAAGAAAGATCAAGGAATCTGAATCACTTAAAGACATTCCTGTTGTGATCATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGGTGCTTGGAAGAAGGAGCAGAAGAATTTATACTTAAACCAGTGAAATTAGCAGATGTTAACAAGCTCAAACCCTTCTTATCAAGAGGAAGAACAAAGGAAACAGAATCAAGCAATTATAAGAGAAAGGAAATGGAACAGAATCATTCATCAGACAAGACAAGAACTAAAATACAATGA | 540 | 37.22 | MGMAAAEAQFHVLAVDDSIIDRKLIERLLKTSSYHVTAVDSGSKALELLGLVEQNQRNGNTPSVSPHNHHQEIEVNMIITDYCMPGMTGFDLLRKIKESESLKDIPVVIMSSENVPSRINRCLEEGAEEFILKPVKLADVNKLKPFLSRGRTKETESSNYKRKEMEQNHSSDKTRTKIQ | 179 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 55319399 | 55320353 | + | evm.model.ptg000006l.694 | HCH1g0631 | 538650 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0631 | 179 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 7 | 169 | IPR045279 | GO:0009736(InterPro) | |
HCH1g0631 | 179 | ProSiteProfiles | Response regulatory domain profile. | 11 | 148 | IPR001789 | GO:0000160(InterPro) | |
HCH1g0631 | 179 | Pfam | Response regulator receiver domain | 70 | 140 | IPR001789 | GO:0000160(InterPro) | |
HCH1g0631 | 179 | CDD | REC_typeA_ARR | 12 | 143 | - | - | |
HCH1g0631 | 179 | SUPERFAMILY | CheY-like | 10 | 140 | IPR011006 | - | |
HCH1g0631 | 179 | Gene3D | - | 11 | 178 | - | - | |
HCH1g0631 | 179 | MobiDBLite | consensus disorder prediction | 147 | 179 | - | - | |
HCH1g0631 | 179 | SMART | REC_2 | 10 | 144 | IPR001789 | GO:0000160(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0631 | HCH-Chr1:55319399 | HCH9g1007 | HCH-Chr9:8043156 | 1.20E-55 | dispersed | |
HCH1g0268 | HCH-Chr1:43641933 | HCH1g0631 | HCH-Chr1:55319399 | 3.50E-42 | transposed | |
HCH1g0631 | HCH-Chr1:55319399 | HCH10g1194 | HCH-Chr10:42716281 | 8.60E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33068 | PF00072 | Response_reg | 4.70E-21 | CL0304 | HCH | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH1g0631 | K14492 | - | rcu:8270886 | 252.677 |