Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0631 ATGGGAATGGCTGCTGCAGAAGCTCAGTTTCATGTTTTAGCTGTTGATGACAGCATCATTGATAGGAAATTAATTGAAAGACTTCTCAAGACATCTTCTTATCATGTTACTGCTGTGGATTCTGGTAGCAAAGCTTTGGAATTGCTTGGCTTGGTTGAGCAAAATCAAAGAAATGGAAACACCCCTTCTGTGTCTCCACACAATCATCATCAGGAGATTGAAGTTAATATGATCATTACAGATTACTGCATGCCTGGAATGACAGGCTTTGATCTTTTAAGAAAGATCAAGGAATCTGAATCACTTAAAGACATTCCTGTTGTGATCATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGGTGCTTGGAAGAAGGAGCAGAAGAATTTATACTTAAACCAGTGAAATTAGCAGATGTTAACAAGCTCAAACCCTTCTTATCAAGAGGAAGAACAAAGGAAACAGAATCAAGCAATTATAAGAGAAAGGAAATGGAACAGAATCATTCATCAGACAAGACAAGAACTAAAATACAATGA 540 37.22 MGMAAAEAQFHVLAVDDSIIDRKLIERLLKTSSYHVTAVDSGSKALELLGLVEQNQRNGNTPSVSPHNHHQEIEVNMIITDYCMPGMTGFDLLRKIKESESLKDIPVVIMSSENVPSRINRCLEEGAEEFILKPVKLADVNKLKPFLSRGRTKETESSNYKRKEMEQNHSSDKTRTKIQ 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55319399 55320353 + evm.model.ptg000006l.694 HCH1g0631 538650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0631 179 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 169 IPR045279 GO:0009736(InterPro)
HCH1g0631 179 ProSiteProfiles Response regulatory domain profile. 11 148 IPR001789 GO:0000160(InterPro)
HCH1g0631 179 Pfam Response regulator receiver domain 70 140 IPR001789 GO:0000160(InterPro)
HCH1g0631 179 CDD REC_typeA_ARR 12 143 - -
HCH1g0631 179 SUPERFAMILY CheY-like 10 140 IPR011006 -
HCH1g0631 179 Gene3D - 11 178 - -
HCH1g0631 179 MobiDBLite consensus disorder prediction 147 179 - -
HCH1g0631 179 SMART REC_2 10 144 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0631 HCH-Chr1:55319399 HCH9g1007 HCH-Chr9:8043156 1.20E-55 dispersed
HCH1g0268 HCH-Chr1:43641933 HCH1g0631 HCH-Chr1:55319399 3.50E-42 transposed
HCH1g0631 HCH-Chr1:55319399 HCH10g1194 HCH-Chr10:42716281 8.60E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33068 PF00072 Response_reg 4.70E-21 CL0304 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0631 K14492 - rcu:8270886 252.677