Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0635 ATGAATTTCAAGTCGTTTTGGCTAGAGATGTCGATCAAGCTACACAATTCTGACCCTAAGGGTGGTTCAGGTACGCAGAAAAGGCTGAAGGATCTTTCATCTCAGTCAGGCAATAAATTCTGTGCAGATTGTGGATCTCCAGATCCAAAATGGGTATCTTTGAGTTTGGGGGTATTTATTTGCATCAAATGTTCTGGAGTACACAGGAACCTTGGAGCGCACATATCTAAGGTTCTGTCAGTGAAATTAGATGATTGGACAGATGAACAAATTGATGCTTTGGTGAGTATAGGTGGAAATAATGCAGTAAACAAAAAGTATGAAGTTTGCATCTCAGATGGTAACAAAAAACCAAAACCAGATTCCACTATAGAGGAGCGTTTTGATTATATAAGGAAAAAATATGAGCTGCTACAGTTTTCGAATCAAGATGACCTATCTCTTTGCCCTTACCGTCCATCTCAGCAAAGAATTTCATCACTCTCCAGTAGCTCTTCTAGTGATAACAGTGCCCAAGATAAAAAGCCTTATGAGAAACAACCAACAAAAACTCGAATTGGAAATGCATTTCGGAACAGCTGGGGAAGAAAAGATTCTGAGCATAAGTCCAGCAAGAAGGGCAATTCATTGACGATAAGCAACTCGATGGCAGGTATGGTCGAATTCGTTGGCTTAATTAAGGTTAATGTAGTTAAAGGAACAAATTTAGCTGTCAGGGATGTCATGACCAGTGATCCGTATGTAATTCTCTCATTGGGTCACCAATCGGTGAAGACGCGTGTAATAAGGAGCAATCTCAATCCAGTTTGGAATGAGAGCCTAATGTTGTCAATTCCAGAGCACATTCCTCCTCTAAAAGTGCTTGTGTATGACAAAGATACGTTTTCTACCGATGACTTCATGGGCGAGGCTGAAATCGATATTCAACCACTGCTCACGGCGGCCAGAGCCTGTGAGATGTCGGCAATCAACGAGTCAATGCAGCTAGGGAAATGGGTTGCAGGGAAGGAGAACACTCTTGTAAAAGATGGCATCATCAACCTTGTTGATGGGAAGATTAGACAAGATATCTCCTTGAAGCTGCAAAATGTTGAGAGAGGTGTGTTAGAGATGGAGCTTGAATGTGTTCCTCTTACTCAGTAG 1143 41.56 MNFKSFWLEMSIKLHNSDPKGGSGTQKRLKDLSSQSGNKFCADCGSPDPKWVSLSLGVFICIKCSGVHRNLGAHISKVLSVKLDDWTDEQIDALVSIGGNNAVNKKYEVCISDGNKKPKPDSTIEERFDYIRKKYELLQFSNQDDLSLCPYRPSQQRISSLSSSSSSDNSAQDKKPYEKQPTKTRIGNAFRNSWGRKDSEHKSSKKGNSLTISNSMAGMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILSLGHQSVKTRVIRSNLNPVWNESLMLSIPEHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLLTAARACEMSAINESMQLGKWVAGKENTLVKDGIINLVDGKIRQDISLKLQNVERGVLEMELECVPLTQ 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55338808 55341947 - evm.model.ptg000006l.690 HCH1g0635 538654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0635 380 Gene3D Arf GTPase activating protein 10 147 IPR038508 -
HCH1g0635 380 Pfam C2 domain 225 313 IPR000008 -
HCH1g0635 380 ProSiteProfiles C2 domain profile. 206 321 IPR000008 -
HCH1g0635 380 FunFam stromal membrane-associated protein 1 isoform X1 13 146 - -
HCH1g0635 380 MobiDBLite consensus disorder prediction 157 171 - -
HCH1g0635 380 CDD C2_ArfGAP 223 367 - -
HCH1g0635 380 Pfam Putative GTPase activating protein for Arf 27 142 IPR001164 GO:0005096(InterPro)
HCH1g0635 380 Gene3D C2 domain 223 378 IPR035892 -
HCH1g0635 380 PRINTS HIV Rev interacting protein signature 38 57 IPR001164 GO:0005096(InterPro)
HCH1g0635 380 PRINTS HIV Rev interacting protein signature 78 99 IPR001164 GO:0005096(InterPro)
HCH1g0635 380 PRINTS HIV Rev interacting protein signature 57 74 IPR001164 GO:0005096(InterPro)
HCH1g0635 380 SMART C2_3c 225 320 IPR000008 -
HCH1g0635 380 ProSiteProfiles ARF GTPase-activating proteins domain profile. 26 148 IPR001164 GO:0005096(InterPro)
HCH1g0635 380 SUPERFAMILY ArfGap/RecO-like zinc finger 26 141 IPR037278 -
HCH1g0635 380 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 20 380 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
HCH1g0635 380 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 221 317 IPR035892 -
HCH1g0635 380 CDD ArfGap 29 135 - -
HCH1g0635 380 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 222 380 - -
HCH1g0635 380 SMART arf_gap_3 26 145 IPR001164 GO:0005096(InterPro)
HCH1g0635 380 MobiDBLite consensus disorder prediction 157 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1126 HCH-Chr14:38170846 HCH1g0635 HCH-Chr1:55338808 1.20E-96 dispersed
HCH1g0635 HCH-Chr1:55338808 HCH3g0858 HCH-Chr3:6733170 2.60E-92 dispersed
HCH7g0675 HCH-Chr7:7550318 HCH1g0635 HCH-Chr1:55338808 7.20E-06 dispersed
HCH11g0672 HCH-Chr11:31222703 HCH1g0635 HCH-Chr1:55338808 5.90E-07 transposed
HCH1g0101 HCH-Chr1:8040158 HCH1g0635 HCH-Chr1:55338808 2.30E-18 transposed
HCH1g0635 HCH-Chr1:55338808 HCH10g1188 HCH-Chr10:42353502 1.70E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0635 K12486 - csv:101221541 625.935