Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0636 ATGTCATCTGCAAATCCTTATTTTGATGAAATTCGGAGCAAACCTGAGGTTATTGATCCTCCCCAAAATGATGACATGATTGATGTCAGTGAAAGTGCGAATGATTCTACTCGAAATGGGGTAAAACCTAACGGGGCTGTCTCTAGCAGTGTTCGTGAGCTATTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCTAATGGCCACACGTTGTGTTCCGGTTGCAAGCCTAGGGTGCATAATCGGTGTCCCACCTGCAGGCATGAACTTGGCAATATTAGGTGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAGACTTTTGGATGTGTGGGCATATATCCATACTACAGCAAGCTTAAACATGAATCTCAATGTGTCTATAGACCCTATAACTGTCCATATGCGGGGTCAGAATGCACGGTTATTGGCGATATCCCTTCTTTGGTAGCCCACCTCAAGGATGATCATAAAGTTGACATGCATAGTGGTAGCACATTCAACCATCGATATGTCAAGTCAAATCCACAAGAGGTTGAAAATGCTACATGGATGCTAACGGTTTTCAGTTGCTTTGGTCAGTACTTCTGTTTACATTTTGAAGCTTTCCAGCTTGGAATGGCACCTGTCTACATAGCTTTCTTACGGTTTATGGGCGATGATAATGAGGCGAAGAACTATAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTTTGGCAAGGAGTGCCTCGGAGTATTAGAGATAGTCATCGAAAGGTCCGTGATAGTTTTGACGGTCTGATCATCCAACGTAATATGGCGCTATTCTTCTCAGGAGGAGACCGGAAGGAATTGAAACTCAGGGTAACTGGTAGGATTTGGAAGGAACAGTAA 918 43.68 MSSANPYFDEIRSKPEVIDPPQNDDMIDVSESANDSTRNGVKPNGAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPSLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55344176 55346923 - evm.model.ptg000006l.689 HCH1g0636 538655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0636 305 CDD Sina 171 299 - -
HCH1g0636 305 SUPERFAMILY RING/U-box 49 97 - -
HCH1g0636 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
HCH1g0636 305 Pfam Sina, zinc finger 106 181 - -
HCH1g0636 305 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
HCH1g0636 305 MobiDBLite consensus disorder prediction 27 45 - -
HCH1g0636 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 15 108 - -
HCH1g0636 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 166 298 - -
HCH1g0636 305 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270(InterPro)
HCH1g0636 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 32 300 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
HCH1g0636 305 MobiDBLite consensus disorder prediction 1 45 - -
HCH1g0636 305 SUPERFAMILY TRAF domain-like 110 302 - -
HCH1g0636 305 CDD RING-HC_SIAHs 55 93 - -
HCH1g0636 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 109 IPR013083 -
HCH1g0636 305 Pfam Sina, TRAF-like domain 201 298 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
HCH1g0636 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 298 IPR008974 GO:0005515(InterPro)
HCH1g0636 305 FunFam E3 ubiquitin-protein ligase SINAT3 109 165 - -
HCH1g0636 305 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 57 92 IPR049548 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1318 HCH-Chr11:45186364 HCH1g0636 HCH-Chr1:55344176 1.70E-135 dispersed
HCH1g0636 HCH-Chr1:55344176 HCH9g1156 HCH-Chr9:16137382 2.10E-132 dispersed
HCH1g0636 HCH-Chr1:55344176 HCH10g1186 HCH-Chr10:42314135 7.30E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0636 K04506 - csv:101205198 614.379