Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0652 ATGGCAGGAATGTTTAACGGGGATGGATCATCATCTGTAACTTCATCACCTTTGCAGCTCTTTCCGTGGTCGTTATCTCCTGGTATAGGATCACCTTACCCTTTTCTAAGGGAGCTTAAATCGGAAGAGAGGGGCTTGTGCTTAATTCATCTTCTTCTTGCTTGTGCCAACCAAGTTGCTGCTGGTAACATTGAGAATGCTAATATTGGCCTTGAGCAAATTTCCCACCTTGCTTCTCCTGACGGGGACACAATGCAGCGAATCGCTGCTTACTTCACCGAGGCACTTGCTGATCGAATACTTAAAGCCTGGCCTGGTTTACACAAAGCCCTCAATTCCACCAAAATATTGTCGGTCCCTGAAGAAATTCTTGCCCAGAGATTGTTCTTTGAACTCTGCCCCTTCTTGAAGCTCGCATATGTGATCACGAATCAGGCTATTATAGAAGCAATGGAAGGAGAAAAGATGATTCACATTATTGATTTTAAATCATGTGAGCCTGCCCAGTGGATAAATCTTCTTCAGACTTTGAAAAATAGACCAGAGGGTCCACCCCACTTGAGAATTACTGGAATTCATGAACAGAAGGAGGTGTTGGAACAAATGGCTCTTAGGCTGACCGAAGAGGCCGAAAAATGGGATATTCCTTTTCAGTTCATCCCAGTTGTTAGCAAGTTAGAAAACCTCGACCTTGAAAGTTTACGGGTCAAAACGGGGGAAGCACTTGCAGTTAGTTCTGTACTTGAACTGCATTCTATTTTGGCTACGGATGAAGATAAGAAAAACTCACCATCTGCATCAAAGAACTTGCAAAAACTCTTACATATGAAGCAGAGAACATTGGGAGAGTGGCTCGAGACGGATTCAATGCAAGTTTTTACTAGTCCTGATTCAGCTTCTGTATCTTCCCCATCATCATTAAATCCTTCCCAAAAGATGAATAGTTTTTTAACTGCACTCTGGGGCCTCTCACCAAAAGTAATGGTGATAACTGAGCAGGAATCAAACCTGAATGGTTCTACTTTTATGGAGAGGGTACTAGAAGCATTAAACTTCTATGCTGCATTATTTGATTGTTTAGAGTCCACTGTATCGAGATCATCTTTTGAGCGACAGAGGGTCGAGAAGATGCTTTTGGGAGAGGAAATTAAAAACATCATTGCATGTGAGGGGGTCGAAAGGAAGGAGAGACATGAAAAGCTTGAGAAATGGATACAAAGGTTCGAATCTGTCGGATTCGGGAAGGTTCCGTTGAGTTATCTTGGTATGTTACTAGCAAGTAGAATGTTGCAGAGTTATGGCTATGATGGATATAAAATCAAAGAAGAAAATGGATTTTTGTTCATCTGTTGGCAAGATAGGCCCCTTTTTTCTGTCTCAGCATGGAGGTTTCAAAGGCAAAGCTGA 1407 42.15 MAGMFNGDGSSSVTSSPLQLFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLACANQVAAGNIENANIGLEQISHLASPDGDTMQRIAAYFTEALADRILKAWPGLHKALNSTKILSVPEEILAQRLFFELCPFLKLAYVITNQAIIEAMEGEKMIHIIDFKSCEPAQWINLLQTLKNRPEGPPHLRITGIHEQKEVLEQMALRLTEEAEKWDIPFQFIPVVSKLENLDLESLRVKTGEALAVSSVLELHSILATDEDKKNSPSASKNLQKLLHMKQRTLGEWLETDSMQVFTSPDSASVSSPSSLNPSQKMNSFLTALWGLSPKVMVITEQESNLNGSTFMERVLEALNFYAALFDCLESTVSRSSFERQRVEKMLLGEEIKNIIACEGVERKERHEKLEKWIQRFESVGFGKVPLSYLGMLLASRMLQSYGYDGYKIKEENGFLFICWQDRPLFSVSAWRFQRQS 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55453184 55454590 - evm.model.ptg000006l.673 HCH1g0652 538671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0652 468 Pfam GRAS domain family 48 463 IPR005202 -
HCH1g0652 468 ProSiteProfiles GRAS family profile. 39 463 IPR005202 -
HCH1g0652 468 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 462 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0652 HCH-Chr1:55453184 HCH8g0416 HCH-Chr8:37985110 3.60E-168 dispersed
HCH1g0652 HCH-Chr1:55453184 HCH10g1334 HCH-Chr10:45879793 8.90E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33070 PF03514 GRAS 5.70E-137 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0652 - - - 0.0