Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0657 ATGGGGAAGAAAGGGAGTTGGTTTTCAGCAGTGAAGAAAGTTCTCAGTCATGAATCTAAGGAGAAGAAAAAACAGCGTCAGAAGGCAGACAAATCTAAGAAGAGATGGTTCCAAAAGCAAGAAAGTATGGATGATATCACCTTTTTGGAACAATCTCCCTTGGATATTCTTACACAACCTCCTAATATTCTAGACGACGTCGATGCGGAACAAATTGAAGTGAAGAATGAACAGAGTGATCATGATCATGCCTGCCCCGTGGATGCACAACCGGATGTGGAAGTTGTAGATCTACCTGGTATTTCCTCTTTTTCACGAAAGTTAAACGACGAAATAGCCGCTATCAAGATTCAAACTGCATTCCGTGGATATATGGCAAGAAAGGCACTGAGGGCATTGAAAAGGTTGGTGAGGTTGAAATCATTGATGCAAGGGCAATCTGTCAAACGGCAAGTTGCTTTTACTTTAAAATCCATGCAGACTGTTGCTCATGTTCAGTCCGAGATTCGTGCAAGGAGAACACGAATGTCAGAAGAGAATCAGGCTCTTCAACGGCAACTTCAACAGAAACGTGAGAAAGAACTTGTGAAGTTAAAAGCTTCTAATGGTGGACAGTGGGATGTTAGCGCCCAATCTAAAGCGCAAATTGAAGCTAAATTAGTGAACAAGCAAGAAGCTGCAATGAGAAGAGAGAGAGCACTGGCTTATGCTTTCTCTCATCAGCAGACATTGAAGAATTCTTCAAAAAATGTGATACCGACTTTCATGGATCCAAACAATCCCCACTGGGGTTGGAGTTGGTTAGAGGGGTGGATGGCAGCTCGTCCGTGGGAAGGTCGAAGCACGGTCGTTTACCAAGATCATGTATCCATCAAGAGTGCAGGAAGCCAAGCATTGATGGGAGGCGTATCCAAAGTTTATGCCCGCCGTGATCTAAACCTCCTTAACAAGCCTTCTCCAATGACTCCTACTAGCCAAAAAACAGGCCAACCGCATAGCCAGCTGTCACCTTTGACTCCCAAGGCATTACTACCTTCATCATCTGGAAAAAAGAAGATAACATCAGCCAGCCTGAGGGTGCGTAGCCAGGGTGGTGAGGATGAATCAAGGAGCACGTTGAGCGTCAAGTCGGATCGCTACCAAAGACATCATAGCATTGCAGGGTCATCTATTAGTGAAGATAAAAGCCATGTGAGTTTACCTTCTGTTCCTAGTTATCTTACACCAACAAAAGCTGCAAAGGTTAAGTCCAGGTTATCGAGTCCATCTGTAACAGAGAAGAAAGGAGCATTGGGCCGGTCCTCGAGTTCGTCTAGAACCGAGAAAAAAGGGACGATGGAAAAAGGGTCAGCAGGTTCTGCAAAGAAGAGGCTCTCATTTACTGCTCCCTCAGCTCAACCAAGGTCAAGAAGGCATTCAAGTCCTCCATGTTTGGATGTTGTCTGA 1446 44.88 MGKKGSWFSAVKKVLSHESKEKKKQRQKADKSKKRWFQKQESMDDITFLEQSPLDILTQPPNILDDVDAEQIEVKNEQSDHDHACPVDAQPDVEVVDLPGISSFSRKLNDEIAAIKIQTAFRGYMARKALRALKRLVRLKSLMQGQSVKRQVAFTLKSMQTVAHVQSEIRARRTRMSEENQALQRQLQQKREKELVKLKASNGGQWDVSAQSKAQIEAKLVNKQEAAMRRERALAYAFSHQQTLKNSSKNVIPTFMDPNNPHWGWSWLEGWMAARPWEGRSTVVYQDHVSIKSAGSQALMGGVSKVYARRDLNLLNKPSPMTPTSQKTGQPHSQLSPLTPKALLPSSSGKKKITSASLRVRSQGGEDESRSTLSVKSDRYQRHHSIAGSSISEDKSHVSLPSVPSYLTPTKAAKVKSRLSSPSVTEKKGALGRSSSSSRTEKKGTMEKGSAGSAKKRLSFTAPSAQPRSRRHSSPPCLDVV 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55483785 55487014 - evm.model.ptg000006l.668 HCH1g0657 538676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0657 481 MobiDBLite consensus disorder prediction 363 383 - -
HCH1g0657 481 PANTHER IQ-DOMAIN 5-RELATED 5 439 - -
HCH1g0657 481 MobiDBLite consensus disorder prediction 317 362 - -
HCH1g0657 481 MobiDBLite consensus disorder prediction 384 406 - -
HCH1g0657 481 Gene3D - 24 138 - -
HCH1g0657 481 ProSiteProfiles IQ motif profile. 110 138 - -
HCH1g0657 481 MobiDBLite consensus disorder prediction 315 481 - -
HCH1g0657 481 Pfam IQ calmodulin-binding motif 113 131 IPR000048 GO:0005515(InterPro)
HCH1g0657 481 MobiDBLite consensus disorder prediction 457 471 - -
HCH1g0657 481 Coils Coil 166 193 - -
HCH1g0657 481 MobiDBLite consensus disorder prediction 414 439 - -
HCH1g0657 481 SMART iq_5 109 131 IPR000048 GO:0005515(InterPro)
HCH1g0657 481 MobiDBLite consensus disorder prediction 15 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0657 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0657 HCH-Chr1:55483785 HCH8g0320 HCH-Chr8:25360599 1.40E-29 dispersed
HCH1g0657 HCH-Chr1:55483785 HCH10g1165 HCH-Chr10:41650275 2.70E-17 wgd
HCH1g0657 HCH-Chr1:55483785 HCH11g0260 HCH-Chr11:2400309 1.10E-55 wgd
HCH1g0657 HCH-Chr1:55483785 HCH13g0419 HCH-Chr13:2901832 1.30E-120 wgd
HCH1g0657 HCH-Chr1:55483785 HCH9g0605 HCH-Chr9:4048401 4.50E-81 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0657 . 101 278 IQD Protein Family AT3G09710 55.8 2.3e-50 196.8
HCH13g0419 . 1 471 IQD Protein Family AT3G52290 55.7 3.1e-105 379.0
HCH8g0320 . 1 410 IQD Protein Family AT3G22190 55.8 2.5e-91 332.8
HCH12g0495 . 1 440 IQD Protein Family AT2G26180 58.8 4.0e-118 421.8
HCH14g0967 . 1 279 IQD Protein Family AT2G33990 50.5 2.8e-61 232.3
HCH6g0649 . 44 222 IQD Protein Family AT2G33990 53.9 2.1e-48 189.5
HCH6g0649 . 47 257 IQD Protein Family AT3G15050 56.3 1.3e-58 223.4
HCH10g0074 . 1 546 IQD Protein Family AT3G59690 52.3 2.3e-107 386.3
HCH13g1014 . 1 495 IQD Protein Family AT4G00820 54.5 4.5e-122 435.3
HCH7g1783 . 1 512 IQD Protein Family AT4G00820 53.0 1.0e-121 434.1
HCH7g1783 . 1 512 IQD Protein Family AT1G01110 51.8 8.3e-121 431.0
HCH13g1014 . 1 495 IQD Protein Family AT1G01110 52.4 1.4e-120 430.3
HCH4g1441 . 1 385 IQD Protein Family AT3G16490 54.5 1.4e-77 287.0
HCH5g1306 . 1 380 IQD Protein Family AT3G16490 53.2 1.2e-71 267.3
HCH8g0696 . 1 397 IQD Protein Family AT3G16490 52.1 3.2e-69 259.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012991 0 3 0 0 0 1 2 0 0 1 1 0 2 1 1 2 0 0 2 0 1 1 1 1 1 1 1 2 3 0 28