Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0657 ATGGGGAAGAAAGGGAGTTGGTTTTCAGCAGTGAAGAAAGTTCTCAGTCATGAATCTAAGGAGAAGAAAAAACAGCGTCAGAAGGCAGACAAATCTAAGAAGAGATGGTTCCAAAAGCAAGAAAGTATGGATGATATCACCTTTTTGGAACAATCTCCCTTGGATATTCTTACACAACCTCCTAATATTCTAGACGACGTCGATGCGGAACAAATTGAAGTGAAGAATGAACAGAGTGATCATGATCATGCCTGCCCCGTGGATGCACAACCGGATGTGGAAGTTGTAGATCTACCTGGTATTTCCTCTTTTTCACGAAAGTTAAACGACGAAATAGCCGCTATCAAGATTCAAACTGCATTCCGTGGATATATGGCAAGAAAGGCACTGAGGGCATTGAAAAGGTTGGTGAGGTTGAAATCATTGATGCAAGGGCAATCTGTCAAACGGCAAGTTGCTTTTACTTTAAAATCCATGCAGACTGTTGCTCATGTTCAGTCCGAGATTCGTGCAAGGAGAACACGAATGTCAGAAGAGAATCAGGCTCTTCAACGGCAACTTCAACAGAAACGTGAGAAAGAACTTGTGAAGTTAAAAGCTTCTAATGGTGGACAGTGGGATGTTAGCGCCCAATCTAAAGCGCAAATTGAAGCTAAATTAGTGAACAAGCAAGAAGCTGCAATGAGAAGAGAGAGAGCACTGGCTTATGCTTTCTCTCATCAGCAGACATTGAAGAATTCTTCAAAAAATGTGATACCGACTTTCATGGATCCAAACAATCCCCACTGGGGTTGGAGTTGGTTAGAGGGGTGGATGGCAGCTCGTCCGTGGGAAGGTCGAAGCACGGTCGTTTACCAAGATCATGTATCCATCAAGAGTGCAGGAAGCCAAGCATTGATGGGAGGCGTATCCAAAGTTTATGCCCGCCGTGATCTAAACCTCCTTAACAAGCCTTCTCCAATGACTCCTACTAGCCAAAAAACAGGCCAACCGCATAGCCAGCTGTCACCTTTGACTCCCAAGGCATTACTACCTTCATCATCTGGAAAAAAGAAGATAACATCAGCCAGCCTGAGGGTGCGTAGCCAGGGTGGTGAGGATGAATCAAGGAGCACGTTGAGCGTCAAGTCGGATCGCTACCAAAGACATCATAGCATTGCAGGGTCATCTATTAGTGAAGATAAAAGCCATGTGAGTTTACCTTCTGTTCCTAGTTATCTTACACCAACAAAAGCTGCAAAGGTTAAGTCCAGGTTATCGAGTCCATCTGTAACAGAGAAGAAAGGAGCATTGGGCCGGTCCTCGAGTTCGTCTAGAACCGAGAAAAAAGGGACGATGGAAAAAGGGTCAGCAGGTTCTGCAAAGAAGAGGCTCTCATTTACTGCTCCCTCAGCTCAACCAAGGTCAAGAAGGCATTCAAGTCCTCCATGTTTGGATGTTGTCTGA 1446 44.88 MGKKGSWFSAVKKVLSHESKEKKKQRQKADKSKKRWFQKQESMDDITFLEQSPLDILTQPPNILDDVDAEQIEVKNEQSDHDHACPVDAQPDVEVVDLPGISSFSRKLNDEIAAIKIQTAFRGYMARKALRALKRLVRLKSLMQGQSVKRQVAFTLKSMQTVAHVQSEIRARRTRMSEENQALQRQLQQKREKELVKLKASNGGQWDVSAQSKAQIEAKLVNKQEAAMRRERALAYAFSHQQTLKNSSKNVIPTFMDPNNPHWGWSWLEGWMAARPWEGRSTVVYQDHVSIKSAGSQALMGGVSKVYARRDLNLLNKPSPMTPTSQKTGQPHSQLSPLTPKALLPSSSGKKKITSASLRVRSQGGEDESRSTLSVKSDRYQRHHSIAGSSISEDKSHVSLPSVPSYLTPTKAAKVKSRLSSPSVTEKKGALGRSSSSSRTEKKGTMEKGSAGSAKKRLSFTAPSAQPRSRRHSSPPCLDVV 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55483785 55487014 - evm.model.ptg000006l.668 HCH1g0657 538676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0657 481 MobiDBLite consensus disorder prediction 363 383 - -
HCH1g0657 481 PANTHER IQ-DOMAIN 5-RELATED 5 439 - -
HCH1g0657 481 MobiDBLite consensus disorder prediction 317 362 - -
HCH1g0657 481 MobiDBLite consensus disorder prediction 384 406 - -
HCH1g0657 481 Gene3D - 24 138 - -
HCH1g0657 481 ProSiteProfiles IQ motif profile. 110 138 - -
HCH1g0657 481 MobiDBLite consensus disorder prediction 315 481 - -
HCH1g0657 481 Pfam IQ calmodulin-binding motif 113 131 IPR000048 GO:0005515(InterPro)
HCH1g0657 481 MobiDBLite consensus disorder prediction 457 471 - -
HCH1g0657 481 Coils Coil 166 193 - -
HCH1g0657 481 MobiDBLite consensus disorder prediction 414 439 - -
HCH1g0657 481 SMART iq_5 109 131 IPR000048 GO:0005515(InterPro)
HCH1g0657 481 MobiDBLite consensus disorder prediction 15 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0657 HCH-Chr1:55483785 HCH8g0320 HCH-Chr8:25360599 1.40E-29 dispersed
HCH1g0657 HCH-Chr1:55483785 HCH10g1165 HCH-Chr10:41650275 2.70E-17 wgd
HCH1g0657 HCH-Chr1:55483785 HCH11g0260 HCH-Chr11:2400309 1.10E-55 wgd
HCH1g0657 HCH-Chr1:55483785 HCH13g0419 HCH-Chr13:2901832 1.30E-120 wgd
HCH1g0657 HCH-Chr1:55483785 HCH9g0605 HCH-Chr9:4048401 4.50E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0657 - - - 0.0