Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0670 | ATGGCCAAAGACTACCACGACCCTCCACCAGCTCCGCTCTTTGACGGGGCGGAGCTCGGCAAGTGGTCCTTCTACAGGGCCGTCATCGCCGAGTTCATTGCCACTCTTCTCTTTCTTTACATCACTGTTTTAACTGTGATTGGTTATAGCAGCCAAACTGACCCTCACAAGCTTAACCCTGACACCTGTGGCGGCGTAGGAATTCTCGGCATCGCTTGGGCCTTCGGCGGCATGATCTTTATCCTCGTCTATTGCACCGCCGGAATCTCAGGTGGGCATATAAACCCGGCGGTGACATTTGGGCTATTTCTAGCTCGAAAGGTGTCGTTGGTGCGAGCGGTGGCGTATATGGTGGCTCAGTGCTTAGGAGCCATATGTGGAGTGGGGCTCGTAAAAGCTTTCCAAAAAGCTTACTTTAACGAGTTCGGCGGTGGGGCGAATAAGCTCGCTGATGGCTACAGCAAAGGCGTGGGGTTAGCGGCGGAGATCGTTGGAACATTTGTTTTGGTTTATACAGTTTTCTCTGCCACTGATCCCAAGAGAAATGCTAGAGACTCCCATGTTCCTGTATTGGCTCCACTCCCAATTGGGTTTGCTGTGTTTATGGTTCATTTGGCCACCATACCAATTACTGGGACTGGAATCAACCCTGCCAGGAGTCTGGGTTCTGCTGTCATTTTCAATCAGAATAAGCCTTGGAATGATCATTGGATATTCTGGGTTGGGCCATTCATTGGAGCAGCTATTGCAGCTTTTTACCATCAGTTCATTTTGAGAGCAGGTGCTGCCAAAGCTCTTGGCTCTTTCAGGAGCAACCCTTCTGTTTGA | 828 | 50.36 | MAKDYHDPPPAPLFDGAELGKWSFYRAVIAEFIATLLFLYITVLTVIGYSSQTDPHKLNPDTCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQCLGAICGVGLVKAFQKAYFNEFGGGANKLADGYSKGVGLAAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVIFNQNKPWNDHWIFWVGPFIGAAIAAFYHQFILRAGAAKALGSFRSNPSV | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 55597239 | 55599109 | - | evm.model.ptg000006l.655 | HCH1g0670 | 538689 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0670 | 275 | ProSitePatterns | MIP family signature. | 93 | 101 | IPR022357 | - | |
HCH1g0670 | 275 | Gene3D | Glycerol uptake facilitator protein. | 11 | 275 | IPR023271 | - | |
HCH1g0670 | 275 | PRINTS | Major intrinsic protein family signature | 237 | 257 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH1g0670 | 275 | PRINTS | Major intrinsic protein family signature | 112 | 131 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH1g0670 | 275 | PRINTS | Major intrinsic protein family signature | 161 | 179 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH1g0670 | 275 | PRINTS | Major intrinsic protein family signature | 197 | 219 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH1g0670 | 275 | PRINTS | Major intrinsic protein family signature | 75 | 99 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH1g0670 | 275 | PRINTS | Major intrinsic protein family signature | 26 | 45 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH1g0670 | 275 | FunFam | Probable aquaporin PIP1-2 | 11 | 273 | - | - | |
HCH1g0670 | 275 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 3 | 271 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) | |
HCH1g0670 | 275 | Pfam | Major intrinsic protein | 19 | 254 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH1g0670 | 275 | NCBIfam | MIP family channel protein | 30 | 254 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH1g0670 | 275 | CDD | MIP | 26 | 257 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH1g0670 | 275 | SUPERFAMILY | Aquaporin-like | 20 | 259 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0670 | HCH-Chr1:55597239 | HCH9g0590 | HCH-Chr9:3974820 | 1.80E-130 | dispersed | |
HCH7g0462 | HCH-Chr7:3447180 | HCH1g0670 | HCH-Chr1:55597239 | 5.20E-122 | transposed | |
HCH1g0670 | HCH-Chr1:55597239 | HCH11g0278 | HCH-Chr11:2515246 | 2.90E-117 | wgd | |
HCH1g0670 | HCH-Chr1:55597239 | HCH13g0401 | HCH-Chr13:2747532 | 1.80E-138 | wgd | |
HCH1g0670 | HCH-Chr1:55597239 | HCH9g0588 | HCH-Chr9:3961959 | 6.70E-130 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH1g0670 | K09872 | - | csv:101204956 | 498.819 |