Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0670 ATGGCCAAAGACTACCACGACCCTCCACCAGCTCCGCTCTTTGACGGGGCGGAGCTCGGCAAGTGGTCCTTCTACAGGGCCGTCATCGCCGAGTTCATTGCCACTCTTCTCTTTCTTTACATCACTGTTTTAACTGTGATTGGTTATAGCAGCCAAACTGACCCTCACAAGCTTAACCCTGACACCTGTGGCGGCGTAGGAATTCTCGGCATCGCTTGGGCCTTCGGCGGCATGATCTTTATCCTCGTCTATTGCACCGCCGGAATCTCAGGTGGGCATATAAACCCGGCGGTGACATTTGGGCTATTTCTAGCTCGAAAGGTGTCGTTGGTGCGAGCGGTGGCGTATATGGTGGCTCAGTGCTTAGGAGCCATATGTGGAGTGGGGCTCGTAAAAGCTTTCCAAAAAGCTTACTTTAACGAGTTCGGCGGTGGGGCGAATAAGCTCGCTGATGGCTACAGCAAAGGCGTGGGGTTAGCGGCGGAGATCGTTGGAACATTTGTTTTGGTTTATACAGTTTTCTCTGCCACTGATCCCAAGAGAAATGCTAGAGACTCCCATGTTCCTGTATTGGCTCCACTCCCAATTGGGTTTGCTGTGTTTATGGTTCATTTGGCCACCATACCAATTACTGGGACTGGAATCAACCCTGCCAGGAGTCTGGGTTCTGCTGTCATTTTCAATCAGAATAAGCCTTGGAATGATCATTGGATATTCTGGGTTGGGCCATTCATTGGAGCAGCTATTGCAGCTTTTTACCATCAGTTCATTTTGAGAGCAGGTGCTGCCAAAGCTCTTGGCTCTTTCAGGAGCAACCCTTCTGTTTGA 828 50.36 MAKDYHDPPPAPLFDGAELGKWSFYRAVIAEFIATLLFLYITVLTVIGYSSQTDPHKLNPDTCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQCLGAICGVGLVKAFQKAYFNEFGGGANKLADGYSKGVGLAAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVIFNQNKPWNDHWIFWVGPFIGAAIAAFYHQFILRAGAAKALGSFRSNPSV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55597239 55599109 - evm.model.ptg000006l.655 HCH1g0670 538689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0670 275 ProSitePatterns MIP family signature. 93 101 IPR022357 -
HCH1g0670 275 Gene3D Glycerol uptake facilitator protein. 11 275 IPR023271 -
HCH1g0670 275 PRINTS Major intrinsic protein family signature 237 257 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0670 275 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0670 275 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0670 275 PRINTS Major intrinsic protein family signature 197 219 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0670 275 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0670 275 PRINTS Major intrinsic protein family signature 26 45 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0670 275 FunFam Probable aquaporin PIP1-2 11 273 - -
HCH1g0670 275 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 271 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
HCH1g0670 275 Pfam Major intrinsic protein 19 254 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0670 275 NCBIfam MIP family channel protein 30 254 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0670 275 CDD MIP 26 257 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0670 275 SUPERFAMILY Aquaporin-like 20 259 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0670 HCH-Chr1:55597239 HCH9g0590 HCH-Chr9:3974820 1.80E-130 dispersed
HCH7g0462 HCH-Chr7:3447180 HCH1g0670 HCH-Chr1:55597239 5.20E-122 transposed
HCH1g0670 HCH-Chr1:55597239 HCH11g0278 HCH-Chr11:2515246 2.90E-117 wgd
HCH1g0670 HCH-Chr1:55597239 HCH13g0401 HCH-Chr13:2747532 1.80E-138 wgd
HCH1g0670 HCH-Chr1:55597239 HCH9g0588 HCH-Chr9:3961959 6.70E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0670 K09872 - csv:101204956 498.819