Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0678 | ATGGAGGAGTTTGATATTTGCAAGAAAAGCAACACCAATTCTGACCCATTGAATTGGGGGTTGGCAGCTGAGGCCATGAAAGGTAGCCATTTCGATGAGGTGAAGCGGATGGTGGACGAGTATCGAAACCCGATAGCCCGTATCGGTGGCGAGACTTTGACGATAGCGCAAGTCGCCGCCATTGCCTGCCGTGGATCCGATGTCACGGTGGAGCTGGCCGAGGAAAGCCGCGACCGAGTCAAGGCGAGTAGTGAGTGGGTGATGGAAAGTATGAACAAAGGTACAGATAGTTATGGTGTTACAACCGGTTTTGGAGCAACTTCACATAGAAGGACCAAACAAGGTGGTGCCCTTCAAAAGGAGCTTATTAGATTTTTGAATGCTGGAATCTTTGGCAATGAGACTGAATCTTCCCACAAACTGCCACAGGCGGCGACGAGAGCAGCCATGTTGGTAAGGATAAACACCCTCTTGCAAGGGTATTCCGGCATCAGATTTGAGATCTTGGAAGCCATGGCCAAGTTTCTAAATCATGATATCACCCCATGTTTGCCTCTTAGAGGTACTATCACTGCTTCTGGTGACTTGGTTCCTCTTTCCTATATTGCTGGGCTTTTGACTGGCAGGCCCAATTCCAAAGCTGTTGGGCCTGATGGAAAGCCCATCAACCCATCTGAGGCCTTCAAACTAGCTGGTGTTAGTGGTGGATTTTTTGAGTTGCAGCCCAAGGAGGGTCTTGCTCTAGTGAATGGAACTGCTGTTGGTTCTGGCTTGGCTTCCATGGTTCTTTTTGAGGCCAACATTTTGGCACTTCTTTCTGAAATCTTATCAGCTATCTTTGCTGAAGTTATGCAAGGGAAACCGGAGTTTACCGATCACTTGACGCATAAATTGAAGCATCATCCAGGTCAGATCGAAGCGGCTGCGATTATGGAACACATATTGGATGGAAGTTCTTATGTCAAGCAAGCTCAAAAGTTGCATGATATTGATCCTTTACAGAAGCCCAAACAAGATAGATATGCTCTTAGAACATCTCCACAGTGGCTTGGGCCACAGATTGAAGTTATTCGAGTAGCGACGAAAATGATCGAGCGGGAGATAAATTCGGTGAATGACAACCCGTTGATAGATATTTCAAGAAATAAGGCCCTTCATGGAGGGAACTTCCAAGGCACCCCGATTGGTGTCTCTATGGATAACACTAGGTTGGCAGTTGCTTCTATAGGCAAACTCATGTTTGCTCAATTTTCCGAGCTTGTGAATGATTTTTACAACAATGGTTTGCCTTCGAATCTCTCGGCGAGTCGCAATCCCAGCTTGGATTACGGGTTCAAAGGAGCAGAAATTGCCATGGCATCCTATTGTTCTGAGCTGCAATTCCTTGCCAATCCTGTTACCAATCATGTGCAGAGTGCAGAGCAACATAACCAAGATGTCAACTCTCTAGGCTTGATTTCGTCGAGGAAAACAACCGAGGCGGTTGAGATATTGAAGTTAATGTCTACAACTTTCTTAGTCGCCTTATGCCAAGCCATTGATTTGAGGCATTTAGAGGAAAACTTGAAGAAGGCAGTGAAAAACACAATCAGTCAAGCAGCCAAGAAAGTTCTCACCATTGGCTTTAACGGAGAGCTTCATCCTCTTCGATTCAGCGAGAAAGACTTGCTTCGGGTGGTCGATCGAGAGCATGTTTTCACATACATTGACGATCCATGCAGCGCTACCTATCCATTGATGCAGAAGTTAAGACAAGTCTTGGTAGAGCATGCTTTGAACAACGATAACAAAGATAGTATTTTCCACAAGATAGGAGCCTTTGAGGAAGAATTGAAAACCATGTTACCAAAAGAGGTAGAAAATGTGAGAGTGGAGTTTGAGAGTGGAAATCCAACAATTCAAAACCAAATAAAGGAATGCAGGTCCTATCCACTATACAAGTTTGTGAGAGAAACTTTGGGCACAAATTTGCTAACTGGTGAGAAAGCTAAATCACCAGGAGAAGAATTTGATAAGGTTTTCTCTGCTATTTCTGCTGGCAAGCTCATTGATCCAATGTTGGAGTGTTTCAAAGAATGGAATGGTGCTCCTCTTCCCATAAACTAA | 2106 | 44.82 | MEEFDICKKSNTNSDPLNWGLAAEAMKGSHFDEVKRMVDEYRNPIARIGGETLTIAQVAAIACRGSDVTVELAEESRDRVKASSEWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNETESSHKLPQAATRAAMLVRINTLLQGYSGIRFEILEAMAKFLNHDITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPDGKPINPSEAFKLAGVSGGFFELQPKEGLALVNGTAVGSGLASMVLFEANILALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKQAQKLHDIDPLQKPKQDRYALRTSPQWLGPQIEVIRVATKMIEREINSVNDNPLIDISRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTTEAVEILKLMSTTFLVALCQAIDLRHLEENLKKAVKNTISQAAKKVLTIGFNGELHPLRFSEKDLLRVVDREHVFTYIDDPCSATYPLMQKLRQVLVEHALNNDNKDSIFHKIGAFEEELKTMLPKEVENVRVEFESGNPTIQNQIKECRSYPLYKFVRETLGTNLLTGEKAKSPGEEFDKVFSAISAGKLIDPMLECFKEWNGAPLPIN | 701 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 55674812 | 55677620 | + | evm.model.ptg000006l.647 | HCH1g0678 | 538697 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0678 | 701 | PANTHER | HISTIDINE AMMONIA-LYASE | 7 | 700 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
HCH1g0678 | 701 | Gene3D | - | 519 | 635 | IPR023144 | - | |
HCH1g0678 | 701 | SUPERFAMILY | L-aspartase-like | 15 | 700 | IPR008948 | GO:0003824(InterPro) | |
HCH1g0678 | 701 | Gene3D | - | 6 | 252 | IPR024083 | - | |
HCH1g0678 | 701 | FunFam | Phenylalanine ammonia-lyase | 6 | 252 | - | - | |
HCH1g0678 | 701 | FunFam | Phenylalanine ammonia-lyase | 519 | 635 | - | - | |
HCH1g0678 | 701 | NCBIfam | phenylalanine ammonia-lyase | 15 | 691 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) | |
HCH1g0678 | 701 | CDD | PAL-HAL | 51 | 516 | IPR001106 | - | |
HCH1g0678 | 701 | Gene3D | Fumarase/aspartase (Central domain) | 253 | 696 | - | - | |
HCH1g0678 | 701 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 188 | 204 | IPR022313 | GO:0016841(InterPro) | |
HCH1g0678 | 701 | Pfam | Aromatic amino acid lyase | 53 | 530 | IPR001106 | - | |
HCH1g0678 | 701 | FunFam | Phenylalanine ammonia-lyase | 253 | 535 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0678 | HCH-Chr1:55674812 | HCH9g0579 | HCH-Chr9:3861421 | 0.00E+00 | dispersed | |
HCH1g0678 | HCH-Chr1:55674812 | HCH9g0578 | HCH-Chr9:3815159 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH1g0678 | K10775 | - | rcu:8273543 | 1177.16 |