Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0678 ATGGAGGAGTTTGATATTTGCAAGAAAAGCAACACCAATTCTGACCCATTGAATTGGGGGTTGGCAGCTGAGGCCATGAAAGGTAGCCATTTCGATGAGGTGAAGCGGATGGTGGACGAGTATCGAAACCCGATAGCCCGTATCGGTGGCGAGACTTTGACGATAGCGCAAGTCGCCGCCATTGCCTGCCGTGGATCCGATGTCACGGTGGAGCTGGCCGAGGAAAGCCGCGACCGAGTCAAGGCGAGTAGTGAGTGGGTGATGGAAAGTATGAACAAAGGTACAGATAGTTATGGTGTTACAACCGGTTTTGGAGCAACTTCACATAGAAGGACCAAACAAGGTGGTGCCCTTCAAAAGGAGCTTATTAGATTTTTGAATGCTGGAATCTTTGGCAATGAGACTGAATCTTCCCACAAACTGCCACAGGCGGCGACGAGAGCAGCCATGTTGGTAAGGATAAACACCCTCTTGCAAGGGTATTCCGGCATCAGATTTGAGATCTTGGAAGCCATGGCCAAGTTTCTAAATCATGATATCACCCCATGTTTGCCTCTTAGAGGTACTATCACTGCTTCTGGTGACTTGGTTCCTCTTTCCTATATTGCTGGGCTTTTGACTGGCAGGCCCAATTCCAAAGCTGTTGGGCCTGATGGAAAGCCCATCAACCCATCTGAGGCCTTCAAACTAGCTGGTGTTAGTGGTGGATTTTTTGAGTTGCAGCCCAAGGAGGGTCTTGCTCTAGTGAATGGAACTGCTGTTGGTTCTGGCTTGGCTTCCATGGTTCTTTTTGAGGCCAACATTTTGGCACTTCTTTCTGAAATCTTATCAGCTATCTTTGCTGAAGTTATGCAAGGGAAACCGGAGTTTACCGATCACTTGACGCATAAATTGAAGCATCATCCAGGTCAGATCGAAGCGGCTGCGATTATGGAACACATATTGGATGGAAGTTCTTATGTCAAGCAAGCTCAAAAGTTGCATGATATTGATCCTTTACAGAAGCCCAAACAAGATAGATATGCTCTTAGAACATCTCCACAGTGGCTTGGGCCACAGATTGAAGTTATTCGAGTAGCGACGAAAATGATCGAGCGGGAGATAAATTCGGTGAATGACAACCCGTTGATAGATATTTCAAGAAATAAGGCCCTTCATGGAGGGAACTTCCAAGGCACCCCGATTGGTGTCTCTATGGATAACACTAGGTTGGCAGTTGCTTCTATAGGCAAACTCATGTTTGCTCAATTTTCCGAGCTTGTGAATGATTTTTACAACAATGGTTTGCCTTCGAATCTCTCGGCGAGTCGCAATCCCAGCTTGGATTACGGGTTCAAAGGAGCAGAAATTGCCATGGCATCCTATTGTTCTGAGCTGCAATTCCTTGCCAATCCTGTTACCAATCATGTGCAGAGTGCAGAGCAACATAACCAAGATGTCAACTCTCTAGGCTTGATTTCGTCGAGGAAAACAACCGAGGCGGTTGAGATATTGAAGTTAATGTCTACAACTTTCTTAGTCGCCTTATGCCAAGCCATTGATTTGAGGCATTTAGAGGAAAACTTGAAGAAGGCAGTGAAAAACACAATCAGTCAAGCAGCCAAGAAAGTTCTCACCATTGGCTTTAACGGAGAGCTTCATCCTCTTCGATTCAGCGAGAAAGACTTGCTTCGGGTGGTCGATCGAGAGCATGTTTTCACATACATTGACGATCCATGCAGCGCTACCTATCCATTGATGCAGAAGTTAAGACAAGTCTTGGTAGAGCATGCTTTGAACAACGATAACAAAGATAGTATTTTCCACAAGATAGGAGCCTTTGAGGAAGAATTGAAAACCATGTTACCAAAAGAGGTAGAAAATGTGAGAGTGGAGTTTGAGAGTGGAAATCCAACAATTCAAAACCAAATAAAGGAATGCAGGTCCTATCCACTATACAAGTTTGTGAGAGAAACTTTGGGCACAAATTTGCTAACTGGTGAGAAAGCTAAATCACCAGGAGAAGAATTTGATAAGGTTTTCTCTGCTATTTCTGCTGGCAAGCTCATTGATCCAATGTTGGAGTGTTTCAAAGAATGGAATGGTGCTCCTCTTCCCATAAACTAA 2106 44.82 MEEFDICKKSNTNSDPLNWGLAAEAMKGSHFDEVKRMVDEYRNPIARIGGETLTIAQVAAIACRGSDVTVELAEESRDRVKASSEWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNETESSHKLPQAATRAAMLVRINTLLQGYSGIRFEILEAMAKFLNHDITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPDGKPINPSEAFKLAGVSGGFFELQPKEGLALVNGTAVGSGLASMVLFEANILALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKQAQKLHDIDPLQKPKQDRYALRTSPQWLGPQIEVIRVATKMIEREINSVNDNPLIDISRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTTEAVEILKLMSTTFLVALCQAIDLRHLEENLKKAVKNTISQAAKKVLTIGFNGELHPLRFSEKDLLRVVDREHVFTYIDDPCSATYPLMQKLRQVLVEHALNNDNKDSIFHKIGAFEEELKTMLPKEVENVRVEFESGNPTIQNQIKECRSYPLYKFVRETLGTNLLTGEKAKSPGEEFDKVFSAISAGKLIDPMLECFKEWNGAPLPIN 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55674812 55677620 + evm.model.ptg000006l.647 HCH1g0678 538697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0678 701 PANTHER HISTIDINE AMMONIA-LYASE 7 700 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
HCH1g0678 701 Gene3D - 519 635 IPR023144 -
HCH1g0678 701 SUPERFAMILY L-aspartase-like 15 700 IPR008948 GO:0003824(InterPro)
HCH1g0678 701 Gene3D - 6 252 IPR024083 -
HCH1g0678 701 FunFam Phenylalanine ammonia-lyase 6 252 - -
HCH1g0678 701 FunFam Phenylalanine ammonia-lyase 519 635 - -
HCH1g0678 701 NCBIfam phenylalanine ammonia-lyase 15 691 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
HCH1g0678 701 CDD PAL-HAL 51 516 IPR001106 -
HCH1g0678 701 Gene3D Fumarase/aspartase (Central domain) 253 696 - -
HCH1g0678 701 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 188 204 IPR022313 GO:0016841(InterPro)
HCH1g0678 701 Pfam Aromatic amino acid lyase 53 530 IPR001106 -
HCH1g0678 701 FunFam Phenylalanine ammonia-lyase 253 535 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0678 HCH-Chr1:55674812 HCH9g0579 HCH-Chr9:3861421 0.00E+00 dispersed
HCH1g0678 HCH-Chr1:55674812 HCH9g0578 HCH-Chr9:3815159 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0678 K10775 - rcu:8273543 1177.16