Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0691 ATGGGTCCTACGGAAAAGGACCTAAAACTTGTTGTGAATCAGCTGGCGGAATCCGTGAAGGAGATTTCAGGATTTCCTGAGTGTAATGGTATCTGCAAAAAGATGTATGGAGATTTAGTTCGAAGGATCAAGCTTTTGAGCCCTTTGTTTGAAGAATTGAGAGATGGAGAAGAAGAAGAAGAAGAAGAGTTTGAAGTAGATATTCTTCAGGGCTTGGAATCTTTGACAATTGTTTTGGATTCTGCTAAAGAGCTTCTTTGGTCAGTCTGCAGAGGGAGCAAGCTATATCAGGCTTTGCAATTGGAGAAGATAGTCATTAAGTTTCAACAAGTGACAGTTGAGATTGAAGGAGCGTTAGGGAAGATTTCGTTTGCAAAGCTTGGAATATCGGATGAAGTTCGAGAACAGACCGAACTTGTGCATGCTCAATTCACACGAGCGAAAGAGAGAGTGAACTCACCTGATACACAATTAGAAATGGATTTGGCCATAGCACAGGAAGAAAAAGATCCCGACTCTGCAGTATTGAGAAGACTTTCTGAGAAGCTGCATCTTAGGACAATCAATGATCTGAAGAAAGAATCATTTGTTATCCACGAGTTGGTAATCTCGAGCGATGGAGACCCGGGGGATGTTTTTGGAAAAATGTCATCCATTTTGAAGAAGTTGAAGGATTACGTACTATCTGAAAATCCAGAAGTTCAAACTTCTGAAGCTGAAAAAATTACTATTAAGCACAGATCTCCTGTTATCCCAGACGATTTCAGGTGTCCTATATCGCTTGAATTGATGAGGGATCCAGTTATTGTCTCCACAGGACAGACTTATGAAAGATCTTGCATTCAGAAATGGTTGGATGCAGGGCACAAAACCTGCCCAAAAACTCAGCAGACTTTACTACATACAGCCTTAACACCGAATTATGTTTTGAAGAGCCTGATTTCATTATGGTGCGAAAGCAATGGTGTTGAGATGCCGAAGAAGCAAGGTAGTTGTAGAAACAAGAAATCTGGATGTAGTATTTCAGACTGTGATCGAGCAACTATTGATGCCTTATTAGTAAAACTGGCAAGTGGATCTCCCGAACAAAAGAGATCCGCTGCTGGTGAGCTCCGGTTACTAGCAAAGAGGAATTCCGATAACAGAGTTTGTATTGCCGAGGCAGGAGCCATTCCGTTCCTCGTACAACTGTTGTCATCGGATGATACTAGGACTCAAGAGCATGCAGTTACAGCACTTTTAAATCTCTCCATCAATGACAGTAATAAAAGGACTATCGTAGATTTACGTGCTATTCCTTCTATAGTAGAAGTATTAAGAAGTGGAAGCATGGAAGCAAGAGAAAATGCAGCTGCAACCCTTTTCAGCTTATCTGTTATAGATGAGAACAAGGTAGCAATTGGAGCAGCTGGGGCGATTCCTGCGCTTATAAGTTTGCTTTGTGAAGGGACTCCGAGAGGAAAGAAGGATGCGGCCACTGCTATTTTCAATCTCTCAATCTATCAGGGAAACAAGGCCAGGGCCATAAGATCAGGCATTGTAGCCCCACTCATAGGATTTCTGAAAGATGCTGGAGGTGCAATGGTGGATGAAGCACTGGCAATTCTTGCCATTCTTGCAACTCACAATGAAGGAAAGATAGCAATTGGTCAGGCTGAACCAATCCCAGTTCTGTTAGAGTTCATCAGAACCGGTTCTCCACGTAATCGGGAAAATGCCGCTGCCGTGATGTGGTCACTTTGTAGTACAGATTTGGAGCAGTTGAAGGTGGCTAGGGAACTTGGTGCAGAAGAGGCATTGAAGGAAATATCAGAGAATGGCACTGATAGGGCAAAGAGGAAAGCTGGAAGCATCTTAGAGCTCTTTCAACGCATTGAACCATCTGTCAATTTATAA 1896 42.56 MGPTEKDLKLVVNQLAESVKEISGFPECNGICKKMYGDLVRRIKLLSPLFEELRDGEEEEEEEFEVDILQGLESLTIVLDSAKELLWSVCRGSKLYQALQLEKIVIKFQQVTVEIEGALGKISFAKLGISDEVREQTELVHAQFTRAKERVNSPDTQLEMDLAIAQEEKDPDSAVLRRLSEKLHLRTINDLKKESFVIHELVISSDGDPGDVFGKMSSILKKLKDYVLSENPEVQTSEAEKITIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLISLWCESNGVEMPKKQGSCRNKKSGCSISDCDRATIDALLVKLASGSPEQKRSAAGELRLLAKRNSDNRVCIAEAGAIPFLVQLLSSDDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPSIVEVLRSGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARAIRSGIVAPLIGFLKDAGGAMVDEALAILAILATHNEGKIAIGQAEPIPVLLEFIRTGSPRNRENAAAVMWSLCSTDLEQLKVARELGAEEALKEISENGTDRAKRKAGSILELFQRIEPSVNL 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55765244 55767605 + evm.model.ptg000006l.634 HCH1g0691 538710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0691 631 ProSiteProfiles U-box domain profile. 250 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH1g0691 631 FunFam RING-type E3 ubiquitin transferase 333 628 - -
HCH1g0691 631 Gene3D - 331 461 IPR011989 -
HCH1g0691 631 SMART arm_5 501 541 IPR000225 GO:0005515(InterPro)
HCH1g0691 631 SMART arm_5 419 459 IPR000225 GO:0005515(InterPro)
HCH1g0691 631 SMART arm_5 460 500 IPR000225 GO:0005515(InterPro)
HCH1g0691 631 SMART arm_5 378 418 IPR000225 GO:0005515(InterPro)
HCH1g0691 631 SMART arm_5 542 582 IPR000225 GO:0005515(InterPro)
HCH1g0691 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 430 472 IPR000225 GO:0005515(InterPro)
HCH1g0691 631 Pfam U-box domain 251 321 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH1g0691 631 FunFam RING-type E3 ubiquitin transferase 9 125 - -
HCH1g0691 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 324 IPR013083 -
HCH1g0691 631 Pfam Armadillo/beta-catenin-like repeat 419 458 IPR000225 GO:0005515(InterPro)
HCH1g0691 631 Pfam Armadillo/beta-catenin-like repeat 461 499 IPR000225 GO:0005515(InterPro)
HCH1g0691 631 Pfam Armadillo/beta-catenin-like repeat 378 417 IPR000225 GO:0005515(InterPro)
HCH1g0691 631 SUPERFAMILY ARM repeat 348 621 IPR016024 -
HCH1g0691 631 SMART Ubox_2 254 317 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH1g0691 631 CDD RING-Ubox_PUB 252 304 IPR045210 -
HCH1g0691 631 PANTHER U BOX DOMAIN-CONTAINING 33 625 - -
HCH1g0691 631 SUPERFAMILY RING/U-box 250 326 - -
HCH1g0691 631 Gene3D - 462 624 IPR011989 -
HCH1g0691 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 389 431 IPR000225 GO:0005515(InterPro)
HCH1g0691 631 Gene3D - 10 126 IPR036537 GO:0007166(InterPro)
HCH1g0691 631 FunFam RING-type E3 ubiquitin transferase 251 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0793 HCH-Chr13:7612930 HCH1g0691 HCH-Chr1:55765244 1.10E-09 dispersed
HCH14g0766 HCH-Chr14:35814369 HCH1g0691 HCH-Chr1:55765244 7.70E-14 dispersed
HCH1g0691 HCH-Chr1:55765244 HCH3g1349 HCH-Chr3:51169913 1.40E-119 dispersed
HCH1g0691 HCH-Chr1:55765244 HCH2g1094 HCH-Chr2:53820840 2.20E-128 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0691 K27628 - csv:101221065 996.882