Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0701 ATGGTAGTTTTAAGAATGTTTCTGATCTTCATATGCTTGTTGGGATCAATTCTTCATTTATCATCTGCCACTTTCAATCTCTCTCTTCCTCATCAGCATCCCTTCCCTGAAGCTGTTGCTGATGAAGTTCAGAGGAGAGTCAATGCATCTATATCAAGAAGAGAAATACTATCCATTGAATCAAAAGATCAAATCTACCCCTCATGTCTAACCGGAAACCCCATCGACGACTGTTGGCGCTGCGACCCCAATTGGCAATCCAACCGCCAACGTCTTGCCGACTGCGGTATCGGCTTTGGCCAAGCTGCACTCGGCGGCAAAGGCGGGCGATTCTACATCGTCACCGACTCCTCCGACACCGACCCAACAAACCCGATTCCCGGGACACTCCGACACGCCGTCATCCAAACTGAACCCCTTTGGATAATCTTCGCCTCCGACATGACTATCAAACTCAAATACGAACTAATTCTCAATAGCTTCAAAACCATCGATGGGCGGGGTGCCAACGTGCACATAACCGGAGGCGGGTGCATAACAATCCAATACATTTCCAACATAATCATCCACAACATCCACATTCACCACTGCAAACCATCCGGCAATGCGAACGTAAGGTCGACACCGACACACGTGGGCCATCGGGGGCTATCGGACGGGGACGGGATCTCGATATTCAGCTCGAGGAAGATATGGATTGATCATTGCTCATTGTCATATTGTACAGATGGTTTGATTGATGCAATAATGGGATCAACGGCTATAACAATATCAAACAGCTATTTCTCACATCATGATGAAGTGATGCTATTGGGGCATGATGATAGGTATGTGATGGATTCAGGAATGCAAGTTACAATTGCTTTCAATCATTTTGGGGAAGCTTTGGTCCAGAGAATGCCGAGGTGTAGACATGGATATATTCATGTTGTTAATAATGATTTTACTGCCTGGGAAATGTATGCCATCGGCGGCAGCGCTCGCCCTACTATTAATAGTCAGGGCAATCGGTATACCGCTCCGGTGGATCCAAATGCTAAAGAGGTGACGCGACGTTTAGACGCGTCGGAGACGGACTGGACGGTGTGGAATTGGCGGACTGATGGTGACATTCTGGTGAACGGCGCTTTTTTTGTGCCGTCCGGAGCCGGACTCAGCACTCAATATGGCAAGGCCTCTAGCGTGGAACCCAAATCTGTGGCTCTCATCAATCAGCTCACCCTCAACGCCGGCGTTCTTGGTGCCCCAAGGGATTATGGTCAAGGAATTTCATATCCGGGATTTAGTAGCAGTAACGGCGGCGGAAGCGGTGGCAACACCGTCATAAATAATAGTCCGATGGGTGGTGGTGGTGGTGACGACGGCTACTTCGGGATGGTATTTGGAGGCGGCGGTAGCGGAGCATCAAGGCTGCCCTTATCATCTATAAACTTGTGTCTTCAAATTTTATTAATTTTGTACATAAGTATGATTTATGGTGGTGGATTGACATTATAG 1497 47.96 MVVLRMFLIFICLLGSILHLSSATFNLSLPHQHPFPEAVADEVQRRVNASISRREILSIESKDQIYPSCLTGNPIDDCWRCDPNWQSNRQRLADCGIGFGQAALGGKGGRFYIVTDSSDTDPTNPIPGTLRHAVIQTEPLWIIFASDMTIKLKYELILNSFKTIDGRGANVHITGGGCITIQYISNIIIHNIHIHHCKPSGNANVRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTAITISNSYFSHHDEVMLLGHDDRYVMDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYTAPVDPNAKEVTRRLDASETDWTVWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTLNAGVLGAPRDYGQGISYPGFSSSNGGGSGGNTVINNSPMGGGGGDDGYFGMVFGGGGSGASRLPLSSINLCLQILLILYISMIYGGGLTL 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55861148 55865119 - evm.model.ptg000006l.624 HCH1g0701 538720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0701 498 SMART amb_all 147 344 IPR002022 -
HCH1g0701 498 SUPERFAMILY Pectin lyase-like 64 390 IPR011050 -
HCH1g0701 498 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
HCH1g0701 498 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
HCH1g0701 498 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
HCH1g0701 498 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
HCH1g0701 498 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
HCH1g0701 498 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
HCH1g0701 498 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
HCH1g0701 498 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
HCH1g0701 498 PANTHER PECTATE LYASE 18-RELATED 18 414 IPR045032 GO:0030570(InterPro)
HCH1g0701 498 Gene3D - 72 414 IPR012334 -
HCH1g0701 498 FunFam Pectate lyase 72 414 - -
HCH1g0701 498 Pfam Pectate lyase 157 333 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0701 HCH-Chr1:55861148 HCH7g1401 HCH-Chr7:46751094 3.40E-156 dispersed
HCH1g0701 HCH-Chr1:55861148 HCH13g0367 HCH-Chr13:2441338 3.20E-191 wgd
HCH1g0701 HCH-Chr1:55861148 HCH9g0554 HCH-Chr9:3632306 2.30E-181 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0701 K01728 - csv:101205739 742.265