Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH1g0714 | ATGAACTGTCTTCAAAATCTCTCAATATCTTCTTCCTTTCCAACTCGAAGCTCCAACGTTCGTCATCGAATACCTGAATTCGAGCTCCGTACACTGAGAGTGAGGATTTATACCGATCTTCGTCGACGTTATTCCGTGAAGGCAATATCTGGCTCTACGTCGAGTGCCGAGATGAGTGGTGCTGAGGTGAGTGCTGATGTGGTGAATGAGGCTGAGGAAAAGGAGGAGAAGTCGGAGATATATAGCCATAACATGACAGAAGCTATGGGTGCTGTATTGACGTATAGACATGAGCTGGGGATGAACTACAACTTCATTCGTTCGGATTTAATTGTAGGATCATGCCTACAGAATCCAGAGGATGTTGACAAGCTCCGCAGCATTGGAGTGAAAACAATTTTTTGCTTGCAGCAAGATCCAGATTTGGAATATTTTGGAGTTGATATCGGTGCCATAATAGAATATTCAAAGGCCTACGATGATATTGAACATTTGCGTGCTGAAATAAGGGATTTTGATGCATACGATTTACGACTAAGATTACCAGCTGTTGTAAGCAAATTATATAAAGCTATAAACCGAAATGGAGGAGTGACTTATATACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCGTTGGCGTACATGTTCTGGGTTCAAGGCTATAAACTCAATGAGGCTTTAGACCTACTGCTGAGCAAACGCCCGTGCTTCCCAAAACTAGATGCTATTAAAAGTTCAACTGGTGATATTCTTTCAGGATTAAAAAAGAAGCCCGTGACTCTATCGTGGGAAGATAACAAATGCTCTACTGTAGAAGTATCTGGACTTGATATTGGATGGGGCCAGAGGATACCATTACGATTCAACAAGAAAAGAGGTGCATGGATTCTCAATAGAGAACTGCCGGAAGGACGATATGAGTACAAGTATATCGTTGATGGTGTCTGGACATGCAATGAATATGAACCTGTCACTACTCGCAACAAAGATGGCCATGTCAACAATTTCATTGAAGTTCTTGATGATGATTCAAGTAGCGATGGTGCAATCATTCGGAAAAGGTTATCTGGAGATGAACCCGAGCTAACGATCGAGGAAAGACAAAAAATAAGTCAATTTCTTGAAGCGTATCCAGATGAAAACTGA | 1155 | 41.9 | MNCLQNLSISSSFPTRSSNVRHRIPEFELRTLRVRIYTDLRRRYSVKAISGSTSSAEMSGAEVSADVVNEAEEKEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIRSDLIVGSCLQNPEDVDKLRSIGVKTIFCLQQDPDLEYFGVDIGAIIEYSKAYDDIEHLRAEIRDFDAYDLRLRLPAVVSKLYKAINRNGGVTYIHCTAGLGRAPAVALAYMFWVQGYKLNEALDLLLSKRPCFPKLDAIKSSTGDILSGLKKKPVTLSWEDNKCSTVEVSGLDIGWGQRIPLRFNKKRGAWILNRELPEGRYEYKYIVDGVWTCNEYEPVTTRNKDGHVNNFIEVLDDDSSSDGAIIRKRLSGDEPELTIEERQKISQFLEAYPDEN | 384 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 55977202 | 55982350 | - | evm.model.ptg000006l.611 | HCH1g0714 | 538733 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH1g0714 | 384 | SMART | dsp_5 | 102 | 246 | IPR020422 | GO:0006470(InterPro) | |
| HCH1g0714 | 384 | Pfam | Dual specificity phosphatase, catalytic domain | 157 | 240 | IPR000340 | GO:0016311(InterPro) | |
| HCH1g0714 | 384 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 99 | 243 | IPR029021 | - | |
| HCH1g0714 | 384 | FunFam | Phosphoglucan phosphatase DSP4, chloroplastic | 257 | 347 | - | - | |
| HCH1g0714 | 384 | SUPERFAMILY | E set domains | 259 | 343 | IPR014756 | - | |
| HCH1g0714 | 384 | Gene3D | Protein tyrosine phosphatase superfamily | 95 | 376 | IPR029021 | - | |
| HCH1g0714 | 384 | Pfam | Glycogen recognition site of AMP-activated protein kinase | 261 | 346 | IPR032640 | - | |
| HCH1g0714 | 384 | Gene3D | Immunoglobulins | 257 | 347 | IPR013783 | - | |
| HCH1g0714 | 384 | CDD | DSP_laforin-like | 101 | 248 | IPR045204 | GO:0019203(InterPro) | |
| HCH1g0714 | 384 | FunFam | Phosphoglucan phosphatase DSP4, chloroplastic | 95 | 276 | - | - | |
| HCH1g0714 | 384 | CDD | E_set_AMPKbeta_like_N | 261 | 342 | - | - | |
| HCH1g0714 | 384 | PANTHER | DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN | 3 | 383 | IPR052832 | GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER) | |
| HCH1g0714 | 384 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 179 | 238 | IPR000387 | GO:0016311(InterPro) | |
| HCH1g0714 | 384 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 102 | 259 | IPR020422 | GO:0006470(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH1g0316 | HCH-Chr1:48745374 | HCH1g0714 | HCH-Chr1:55977202 | 1.70E-40 | dispersed |
Pathway information