Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0714 ATGAACTGTCTTCAAAATCTCTCAATATCTTCTTCCTTTCCAACTCGAAGCTCCAACGTTCGTCATCGAATACCTGAATTCGAGCTCCGTACACTGAGAGTGAGGATTTATACCGATCTTCGTCGACGTTATTCCGTGAAGGCAATATCTGGCTCTACGTCGAGTGCCGAGATGAGTGGTGCTGAGGTGAGTGCTGATGTGGTGAATGAGGCTGAGGAAAAGGAGGAGAAGTCGGAGATATATAGCCATAACATGACAGAAGCTATGGGTGCTGTATTGACGTATAGACATGAGCTGGGGATGAACTACAACTTCATTCGTTCGGATTTAATTGTAGGATCATGCCTACAGAATCCAGAGGATGTTGACAAGCTCCGCAGCATTGGAGTGAAAACAATTTTTTGCTTGCAGCAAGATCCAGATTTGGAATATTTTGGAGTTGATATCGGTGCCATAATAGAATATTCAAAGGCCTACGATGATATTGAACATTTGCGTGCTGAAATAAGGGATTTTGATGCATACGATTTACGACTAAGATTACCAGCTGTTGTAAGCAAATTATATAAAGCTATAAACCGAAATGGAGGAGTGACTTATATACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCGTTGGCGTACATGTTCTGGGTTCAAGGCTATAAACTCAATGAGGCTTTAGACCTACTGCTGAGCAAACGCCCGTGCTTCCCAAAACTAGATGCTATTAAAAGTTCAACTGGTGATATTCTTTCAGGATTAAAAAAGAAGCCCGTGACTCTATCGTGGGAAGATAACAAATGCTCTACTGTAGAAGTATCTGGACTTGATATTGGATGGGGCCAGAGGATACCATTACGATTCAACAAGAAAAGAGGTGCATGGATTCTCAATAGAGAACTGCCGGAAGGACGATATGAGTACAAGTATATCGTTGATGGTGTCTGGACATGCAATGAATATGAACCTGTCACTACTCGCAACAAAGATGGCCATGTCAACAATTTCATTGAAGTTCTTGATGATGATTCAAGTAGCGATGGTGCAATCATTCGGAAAAGGTTATCTGGAGATGAACCCGAGCTAACGATCGAGGAAAGACAAAAAATAAGTCAATTTCTTGAAGCGTATCCAGATGAAAACTGA 1155 41.9 MNCLQNLSISSSFPTRSSNVRHRIPEFELRTLRVRIYTDLRRRYSVKAISGSTSSAEMSGAEVSADVVNEAEEKEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIRSDLIVGSCLQNPEDVDKLRSIGVKTIFCLQQDPDLEYFGVDIGAIIEYSKAYDDIEHLRAEIRDFDAYDLRLRLPAVVSKLYKAINRNGGVTYIHCTAGLGRAPAVALAYMFWVQGYKLNEALDLLLSKRPCFPKLDAIKSSTGDILSGLKKKPVTLSWEDNKCSTVEVSGLDIGWGQRIPLRFNKKRGAWILNRELPEGRYEYKYIVDGVWTCNEYEPVTTRNKDGHVNNFIEVLDDDSSSDGAIIRKRLSGDEPELTIEERQKISQFLEAYPDEN 384
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 55977202 55982350 - evm.model.ptg000006l.611 HCH1g0714 538733
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0714 384 SMART dsp_5 102 246 IPR020422 GO:0006470(InterPro)
HCH1g0714 384 Pfam Dual specificity phosphatase, catalytic domain 157 240 IPR000340 GO:0016311(InterPro)
HCH1g0714 384 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 99 243 IPR029021 -
HCH1g0714 384 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 257 347 - -
HCH1g0714 384 SUPERFAMILY E set domains 259 343 IPR014756 -
HCH1g0714 384 Gene3D Protein tyrosine phosphatase superfamily 95 376 IPR029021 -
HCH1g0714 384 Pfam Glycogen recognition site of AMP-activated protein kinase 261 346 IPR032640 -
HCH1g0714 384 Gene3D Immunoglobulins 257 347 IPR013783 -
HCH1g0714 384 CDD DSP_laforin-like 101 248 IPR045204 GO:0019203(InterPro)
HCH1g0714 384 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 95 276 - -
HCH1g0714 384 CDD E_set_AMPKbeta_like_N 261 342 - -
HCH1g0714 384 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 3 383 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
HCH1g0714 384 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 179 238 IPR000387 GO:0016311(InterPro)
HCH1g0714 384 ProSiteProfiles Dual specificity protein phosphatase domain profile. 102 259 IPR020422 GO:0006470(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0316 HCH-Chr1:48745374 HCH1g0714 HCH-Chr1:55977202 1.70E-40 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0714 - - - 0.0