Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0716 ATGTTGGCAATGGAAAACGATTTTGATGCCAAGTTGAGAATTCAGGGAAATTCTTCTAATGGTGGAAGCAATGTTCAGAGATCCAAAAGCTTTGCCTTTCGTGCTCCTCAAGAGAATTTTTCAATCCAGGATTTTGAATTGGGAAAAATATATGGTGTTGGTTCCTATTCCAAGGTTGTGAGGGCAAAGAAGAAGGATACCGGATCGGTATATGCATTGAAGATAATGGACAAAAAGTTTATCACTAAAGAAAATAAAACTGCTTATGTGAAGTTGGAAAGAATTGTACTTGATCAGTTGGATCATCCTGGTGTCGTGAGACTATTTTTTACATTTCAGGATACTTTTTCATTATACATGGCACTGGAATCCTGTGAAGGTGGTGAACTTTTTGATCAAATAGTTAGGAAAGGTCGTTTGTCGGAGGATGAAGCCCGTTTTTATGCCGCAGAAGTTGTGGATGCTCTTGAATATATACACAGTATGGGATTGATACATCGAGATATCAAGCCCGAGAATTTGCTCTTTACTACTGATGGACATATTAAAATAGCTGATTTTGGGAGTGTAAAGCCTATGGTGGATAGTCGAATCACCGTGCTTCCGAATGCAGCATCTGATGATAAAGCGTGTACATTTGTGGGAACTGCTGCATATGTTCCTCCAGAAGTCCTAAATTCCTCGCCTGCAACTTTTGGAAATGACCTCTGGGCCCTTGGCTGCACCCTGTACCAGATGCTTTCAGGAACTTCTCCTTTCAAAGATGCAAGTGAATGGCTTATTTTCCAAAAAATTGTAGCAAGGGATATAAAATTTCCTAACTATTTTTCAGAGGAAGCTAAAGATCTCATTGACCACCTATTGGATTTAGATCCAAGCAAGAGACCAGGTGCAGGACCAGAGGGTTACACTTCTCTTAAGACTCATCCCTTCTTTAAGGGGGTTGATTGGAAAACCATCAGAGGGAAAACCCCTCCCAAGCTTGCTTTGGAAGCAGTGTCTAAAAAAAACGAGCATGATGATGGTCACGATTCTACTTGGAACCCTTCACATATTGGAGATAGTCCATTAAGACAAAATGATGGGAGTGGTGGTGCTGCATCAACCTCTGAATCATCCCATCACATTACGAGGCTTGCATCAATTGACTCCTTTGATTCAAAATGGCAACAATTCCTTGAACCTGGAGAATCTGTTCTTATGATCTCAATGGTGAAAAAACTTCAGAAGCTAACAAGCAAAAAGGTTCAGCTTATCCTCACCAACAAACCGAAATTGATTTACGTTGATCCTTCAAAGCTCATTGTCAAGGGCAATATCATTTGGTCTGACAATCCTAATGACCTCAACGTCCAAGTGACTAGTCCTTCACATTTCAAGATTTGCACACCAAAAAAGATAGCATCTTTTGAGGATGCTAAACAGAGGGCGTGGCAGTGGAAGAAGGCGATCGAGGGGCTTCAGAATCGGTGA 1473 40.94 MLAMENDFDAKLRIQGNSSNGGSNVQRSKSFAFRAPQENFSIQDFELGKIYGVGSYSKVVRAKKKDTGSVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQIVRKGRLSEDEARFYAAEVVDALEYIHSMGLIHRDIKPENLLFTTDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQKIVARDIKFPNYFSEEAKDLIDHLLDLDPSKRPGAGPEGYTSLKTHPFFKGVDWKTIRGKTPPKLALEAVSKKNEHDDGHDSTWNPSHIGDSPLRQNDGSGGAASTSESSHHITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNVQVTSPSHFKICTPKKIASFEDAKQRAWQWKKAIEGLQNR 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55997970 56003605 + evm.model.ptg000006l.609 HCH1g0716 538735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0716 490 Gene3D - 358 490 IPR011993 -
HCH1g0716 490 MobiDBLite consensus disorder prediction 348 373 - -
HCH1g0716 490 SMART serkin_6 45 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0716 490 MobiDBLite consensus disorder prediction 332 347 - -
HCH1g0716 490 CDD STKc_PDK1 43 312 IPR039046 GO:0004674(InterPro)
HCH1g0716 490 FunFam 3-phosphoinositide-dependent protein kinase 2-like 129 327 - -
HCH1g0716 490 SUPERFAMILY Protein kinase-like (PK-like) 42 378 IPR011009 -
HCH1g0716 490 Gene3D Transferase(Phosphotransferase) domain 1 129 324 - -
HCH1g0716 490 SUPERFAMILY PH domain-like 306 489 - -
HCH1g0716 490 FunFam 3-phosphoinositide-dependent protein kinase 2-like 43 128 - -
HCH1g0716 490 MobiDBLite consensus disorder prediction 332 373 - -
HCH1g0716 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0716 490 Gene3D Phosphorylase Kinase; domain 1 43 128 - -
HCH1g0716 490 FunFam 3-phosphoinositide-dependent protein kinase 1 360 490 - -
HCH1g0716 490 Coils Coil 470 490 - -
HCH1g0716 490 Pfam PH domain 387 489 IPR033931 -
HCH1g0716 490 Pfam Protein kinase domain 46 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0716 490 PANTHER SERINE/THREONINE-PROTEIN KINASE 30 326 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
HCH1g0716 490 ProSiteProfiles Protein kinase domain profile. 45 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0716 HCH-Chr1:55997970 HCH8g1345 HCH-Chr8:48336948 2.30E-56 dispersed
HCH8g1212 HCH-Chr8:47517755 HCH1g0716 HCH-Chr1:55997970 2.60E-06 dispersed
HCH1g0716 HCH-Chr1:55997970 HCH7g0369 HCH-Chr7:2662668 5.10E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81283 PF00069 Pkinase 7.80E-67 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0716 K06276 - csv:101212874 897.886