Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0727 ATGGCGTCTTTTTCCTTCTCTTCCTCTTCCTTCTCCTCTTACTACCACCTCATTTCTACTCTCATACCCTTCTTCCTCTCCGCCTTCATCTTTTTCCTCACTAAAAAAACCAAAACGAACCGCCTAAAACTCCCCCCCGGACCGCCCGGATGGCCCATCTTCGGAAACCTCTTCCAAATCGCTCGTTCTAAAAAACCCTTCTTCGAATATCTCGAAGAACAAAGACAAATTTACGGTCCAATCCTTACTCTCAAAATGGGTTCGAAAAATATGATCGTTTTAAGCGACGCGGAGCTGATTCATGAAGCTTTAGTAAAAAAAGGAACGACCTTTGCTAATCGGCCGCCGGATAACCCGACGAGAATCATATTTAGTAGCAATAAATTCTCAGTCAATGCGGCGGTGTACGGCCCTTTGTGGCGGTCCCTCCGCCGTAACATGGTGGAGAATATGCTTAGCTCAAGTAGATTGAAAGAGTTTCGTGGTGTACGAGAAAACGCCATGGATAAATTCATTAAACGAATTAGCGTTGAAGCTGAGGCTAATAACGGCGTCGTTTTGGTTTTGAGAAACGCGCGTTTTGCGTTTTTTTGTATTCTTTTAACGATGTGTTTTGGTTTTGAAATGGAGGAAGAAACGGTGAATAAAATGGACGAGTTGCTAAAAACCGTTTTGATTACTCTCGATCCTAGAATCGACGATTATCTCCCGATTTTAAGTCCGTTTTTCATCAAACAGAAACAAAAAGCTTTAGAAGTTCGAAAACGACAAATCGAATTCGTGGTTCAGTTAATAAACCGGCGGCGGAGGGCTTTGAAAAACCCGGAATCCGACATCGCCGCCACTTCGTTTTCATATCTCGACACACTGTTTGATCTTAAACTCGACGGCGGCTCCCAGCCGAAGGAGGAGGAATTAGTTACTCTTTGCTCTGAGTTTCTCAACGGCGGCACCGACACGACGGCGACAGCCGTCGAGTGGGGGATTGGGGAATTGACCGCTAACCCTGAAATTCAAGAGAAACTTTTCAGAGAAATTAAAGATGTAGTCGGAGGAGAGAGAAAAGTTGACGAAAAAGACGTGGAGAAAATGCCTTATTTACAAGCTGTAGTAAAGGAGTTATTACGAAAACACCCTCCGACTTTTTTTGCTTTGACTCATGCAGTGACGGAGCCAGCGAAGCTGGCGGGTTACGATATCCCGAGAGATGCGAATATGGAGCTTTTCTTGCCGGCTATTGGAAGAGATCCAAAGATTTGGAAGAATCCAGAGAAGTTTGATCCAGAGAGATTCTTTTCTAAAGAAGAAGAAGCTGATATTACAGGGGCAAGATGTGTAAAAATGATGCCGTTTGGCGTCGGGAGAAGGATTTGTCCAGGATTGGGAATGGCTACGATTCATGTTCATTTAATGCTTGCGAGAATGGTGCAAGAATTTCAATGGAGTGAGTTTTCGAAGGTGGATTTTTCATGGAAAATGGAGTTCACTATCGTCATGAAGAATCCTCTCAAAGCTAGGATCAAACCTAGGGTTTGA 1536 43.95 MASFSFSSSSFSSYYHLISTLIPFFLSAFIFFLTKKTKTNRLKLPPGPPGWPIFGNLFQIARSKKPFFEYLEEQRQIYGPILTLKMGSKNMIVLSDAELIHEALVKKGTTFANRPPDNPTRIIFSSNKFSVNAAVYGPLWRSLRRNMVENMLSSSRLKEFRGVRENAMDKFIKRISVEAEANNGVVLVLRNARFAFFCILLTMCFGFEMEEETVNKMDELLKTVLITLDPRIDDYLPILSPFFIKQKQKALEVRKRQIEFVVQLINRRRRALKNPESDIAATSFSYLDTLFDLKLDGGSQPKEEELVTLCSEFLNGGTDTTATAVEWGIGELTANPEIQEKLFREIKDVVGGERKVDEKDVEKMPYLQAVVKELLRKHPPTFFALTHAVTEPAKLAGYDIPRDANMELFLPAIGRDPKIWKNPEKFDPERFFSKEEEADITGARCVKMMPFGVGRRICPGLGMATIHVHLMLARMVQEFQWSEFSKVDFSWKMEFTIVMKNPLKARIKPRV 511
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 56086021 56087556 + evm.model.ptg000006l.598 HCH1g0727 538746
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0727 511 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 27 510 IPR051103 GO:0016020(PANTHER)|GO:0016709(PANTHER)
HCH1g0727 511 SUPERFAMILY Cytochrome P450 45 510 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g0727 511 Pfam Cytochrome P450 45 507 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g0727 511 CDD CYP77_89 77 504 - -
HCH1g0727 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
HCH1g0727 511 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g0727 511 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g0727 511 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g0727 511 PRINTS P450 superfamily signature 458 469 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g0727 511 FunFam Cytochrome P450 family protein 38 511 - -
HCH1g0727 511 Gene3D Cytochrome P450 36 511 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g0727 511 PRINTS E-class P450 group I signature 409 433 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g0727 511 PRINTS E-class P450 group I signature 75 94 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g0727 511 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g0727 511 PRINTS E-class P450 group I signature 99 120 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g0727 511 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g0727 511 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g0727 511 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH1g0727 511 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0829 HCH-Chr14:36200641 HCH1g0727 HCH-Chr1:56086021 3.50E-124 dispersed
HCH1g0727 HCH-Chr1:56086021 HCH2g0341 HCH-Chr2:44460407 1.60E-97 dispersed
HCH1g0727 HCH-Chr1:56086021 HCH13g0340 HCH-Chr13:2281347 3.30E-207 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0727 K21995 - mdm:103408446 749.199