Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0742 ATGGAAAATTTCACTTGGGTTTTGCCGTTTTTTCTTCTCTGCAACTGGTTCCTTTTAGTGTCTTCTCTCAACAATGAAGGAAATGCCCTCTTATCATTCAAACAATGTATTACAGAAGACCCAGAAGGTTCTTTTAGTAATTGGAATGCTTCTAATGAAAACCCTTGCTCTTGGAATGGAATCACATGCAAAGATCTAAGAGTTGTTTCCATTAGCTTTCCCAAAAAGAAACTTTTTGGGTTTCTTCCTTCTTCTCTTGGGTTTTTGTCTGAGCTTAGACATGTAAATTTGAGAAACAATAAGCTTTATGGGAAATTGCCTGTGGAGCTTTTTGAAGCTATTACCATTCAAAGTTTGGTCCTTTATGGGAATTCCTTTTCTGGGTCAGTGCCAAATGAGATTGGTAAGCTTAAAAACCTTCAAATCTTGGATTTTTCACAGAATTTCTTTAATGGGTCGTTGCCTGTTTCTTTAATGCAATGCAGAAGATTGAGAACTCTTGATCTTAGTCAGAATAACTTTACCAATCCTTTGCCTAATGGTTTTGGTACTAGTTTGAGTTTCTTGGAAAAATTGGATCTTTCTCATAATCAGTTTAATGGTTCAATTCCTATTGATTTTGGCAATTTGTCTAGCTTGCAAGGCACTGTTGATTTGTCCCATAATTTGTTTTCTGGTTCTATCCCAGCTAGTTTGGGAAACCTTCCCGAAAAGGTTTATATTGATCTTACTTATAATAATCTGAGTGGTCCTATACCCCAAAATGGTGCTCTTATGAACAGAGGACCAACTGCTTTTATTGGGAATCCTGGACTTTGTGGACCGCCGTTGAAGAACTCATGTTCTCCGGGAACTCCAGGTGCGAGTTCACCGTCCTCATTTCCGTTTTTCCCAGATAATTCACCTGGGAGTTCAGAGGGTAATGGTGATAAGAATGATAAAAGAGGGATGAGTAAGAGCACTTTGATTGCGATAATTGTCAGCGATGTAATCGGTATTTGTCTAATCGGATTGCTGTTCTCGTTTTGTTACTCTAAGTTTTGCACTCATAGAACGAAGACAGATCAATGTAATTATGGTTCTGAGAAGGGAGAAAAGAGAAGAAAGGATTGTCTTTGCTTTAGGAAGGGCGAATCGGGGAATGCTTCGGAGAATATTGAGCAGTATGATCTTGTACCTCTTGATTCACGAGTAACTTTTGATCTCGATGAGCTTCTGAAGGCATCGGCGTTCGTTCTGGGAAAAAGTGGAATTGGGATAGTGTACAAAGTTGTGCTTGAAGATGGACTTACTTTAGCTGTGAGAAGATTAGGTGAAGGAGGTTCTCAAAGATTAAAAGAATTTCAAACTGAAGTTGAAGCAATTGGAAAGTTAAGGCATCCTAATGTTGTTAGTCTTAGAGCATATTATTGGTCTGTTGATGAGAAGCTGCTCATTTATGATTACATACCAAATGGTAACCTTGCATCTGCAATTCATGGGAAGCCTGGAATGGCATCGTTTACACCATTATCGTGGTCTGTTCGGTTAAAGATCCTGAAAGGCATTGCCAAAGGATTGGTTTATCTGCATGAAGTTAGCCCCAAAAAGTATGTTCATGGTCATTTGAAGACAAACAATATACTTCTTGGGCACAACATGGTACCCCATATATCTAATTTTGGACTTGCCCGTCTCGTGAACATTGCTGGAGGATCTCCAACATTGCAATCCAGTCATATGACGGAAGAGAAACCGCAAGAGAAACAACTGAAGTCCGCGATCTCGGAAGCTTGTACATTTAGTACCAGTATGATCAGCTCTTACTACCAAGCCCCGGAAGCCTTCAAGGTGGTGAAACCATCACAGAAGTGGGACGTTTACTCTTACGGTGTCATATTACTCGAAATGATCACCGGAAGGTTGCCAATAGTGCAGGTGGGTACCTCTGAAATGGATCTCGTTCAGTGGATTCAACTCTGCATCGATGAGAAGAAGCCACTCTCAGATGTTTTAGACCCATCTTTAGCTCCAGATGAAGATGCAGAGGAGGAGATAATTGCAGCACTAAAGACTGCATTGGCTTGTGTTCATAGTAATCCTGATAGGAGACCGGCCATGAGACATATTTCTGATGCTTTGAGCAGGTTGGCTATCACTCCAAATTGA 2148 40.27 MENFTWVLPFFLLCNWFLLVSSLNNEGNALLSFKQCITEDPEGSFSNWNASNENPCSWNGITCKDLRVVSISFPKKKLFGFLPSSLGFLSELRHVNLRNNKLYGKLPVELFEAITIQSLVLYGNSFSGSVPNEIGKLKNLQILDFSQNFFNGSLPVSLMQCRRLRTLDLSQNNFTNPLPNGFGTSLSFLEKLDLSHNQFNGSIPIDFGNLSSLQGTVDLSHNLFSGSIPASLGNLPEKVYIDLTYNNLSGPIPQNGALMNRGPTAFIGNPGLCGPPLKNSCSPGTPGASSPSSFPFFPDNSPGSSEGNGDKNDKRGMSKSTLIAIIVSDVIGICLIGLLFSFCYSKFCTHRTKTDQCNYGSEKGEKRRKDCLCFRKGESGNASENIEQYDLVPLDSRVTFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGSQRLKEFQTEVEAIGKLRHPNVVSLRAYYWSVDEKLLIYDYIPNGNLASAIHGKPGMASFTPLSWSVRLKILKGIAKGLVYLHEVSPKKYVHGHLKTNNILLGHNMVPHISNFGLARLVNIAGGSPTLQSSHMTEEKPQEKQLKSAISEACTFSTSMISSYYQAPEAFKVVKPSQKWDVYSYGVILLEMITGRLPIVQVGTSEMDLVQWIQLCIDEKKPLSDVLDPSLAPDEDAEEEIIAALKTALACVHSNPDRRPAMRHISDALSRLAITPN 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56205829 56208088 - evm.model.ptg000006l.465 HCH1g0742 538761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0742 715 Gene3D Transferase(Phosphotransferase) domain 1 483 713 - -
HCH1g0742 715 SMART LRR_typ_2 89 113 IPR003591 -
HCH1g0742 715 SMART LRR_typ_2 137 161 IPR003591 -
HCH1g0742 715 SMART LRR_typ_2 186 209 IPR003591 -
HCH1g0742 715 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 162 709 IPR046959 -
HCH1g0742 715 ProSiteProfiles Protein kinase domain profile. 407 710 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0742 715 MobiDBLite consensus disorder prediction 282 307 - -
HCH1g0742 715 FunFam Leucine-rich repeat receptor-like protein kinase 390 482 - -
HCH1g0742 715 Pfam Protein kinase domain 413 703 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0742 715 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
HCH1g0742 715 MobiDBLite consensus disorder prediction 280 314 - -
HCH1g0742 715 SUPERFAMILY L domain-like 25 277 - -
HCH1g0742 715 SUPERFAMILY Protein kinase-like (PK-like) 412 707 IPR011009 -
HCH1g0742 715 Gene3D Ribonuclease Inhibitor 19 77 IPR032675 -
HCH1g0742 715 Gene3D Ribonuclease Inhibitor 78 284 IPR032675 -
HCH1g0742 715 FunFam Leucine-rich repeat receptor-like protein kinase 23 180 - -
HCH1g0742 715 CDD STKc_IRAK 413 710 - -
HCH1g0742 715 Gene3D Phosphorylase Kinase; domain 1 379 482 - -
HCH1g0742 715 FunFam Leucine-rich repeat receptor-like protein kinase 188 283 - -
HCH1g0742 715 FunFam Leucine-rich repeat protein kinase family protein 483 713 - -
HCH1g0742 715 Pfam Leucine Rich Repeat 163 183 IPR001611 GO:0005515(InterPro)
HCH1g0742 715 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515(InterPro)
HCH1g0742 715 Pfam Leucine Rich Repeat 189 210 IPR001611 GO:0005515(InterPro)
HCH1g0742 715 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515(InterPro)
HCH1g0742 715 Pfam Leucine Rich Repeat 217 235 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0967 HCH-Chr13:15419322 HCH1g0742 HCH-Chr1:56205829 5.50E-133 dispersed
HCH1g0742 HCH-Chr1:56205829 HCH2g0010 HCH-Chr2:695399 5.30E-86 dispersed
HCH1g1137 HCH-Chr1:58862562 HCH1g0742 HCH-Chr1:56205829 4.80E-111 transposed
HCH1g0742 HCH-Chr1:56205829 HCH10g1291 HCH-Chr10:45366271 3.60E-228 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81285 PF00069 Pkinase 2.10E-29 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0742 - - - 0.0