Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0752 ATGGCAAATCCCACTTTCTTCTCTCTCTTCTTTCTCTGCTTCTCATTTCTCCATTTTTCATCTCTCTATGCTTCTCCAAACACAGATTTAGAATCTCTAATGGCATTCAAAACAGCCACTGATAAAAACAACAACCTTCCTCATTGGAACTTTTCCTCTAACCCATGTTCATGGAATGGCATTTCCTGTATCAGAAACCGTGTCTCTAGACTTGTTCTTGAAAATCTCAATCTCACTGGCTCTTTCCATTCTCTCACTTCTTTAACTCAACTTAGAGTTTTGAGCTTGAAAAGAAACAGTCTTTCTGGTCCCATTCCCGATCTCTCTAATCTCACTGCTCTTAAACTCGTCTTTTTAAGTTACAATCAGTTTTCTGGAAACTTCCCAGTTTCTATTATTTCTCTTTTCAGGCTTTACCGTCTTGATCTGTCGTATAATAACTTAACCGGAGAGATTCCGGGTAATGTGAACCGTTTGGTTCATCTGCTTACTCTCCGGCTTGAAAGTAATCGGTTTTCGGGTTCGGTTTCGGAGTTGAATTTACTGAGTCTTCAGGATTTTAATGTTTCAAGGAACAATCTTGTTGGTGAAATTCCGAAATCATTGTCTGTTTTTCCAGAATCTTGTTTTGGTTTTAATAAGGGGTTGTGTGGATTTCCTTTGGAGAAGTGCAAGAGTTTCGCTAGTAACCCGACTGAACCCGAACCCGTGTCCGAACCCGGATCGGAAGGTGCAATTGCTTCTCCTGTAATGCCACCTGAAAACTCTACGGTTACATCTTCTCCTACATTTCAAACAAAACAGGAAAGTGCCCATCACCGGGGTGGTTTGAGTACGGTGGCGATTATCGGCATTATCGTCGGGGATGTTATCGTTCTCGGTGTCGTTACTCTTCTACTATACTGTTACTTTTGGAGGAGCTCTAAAGGTAAAAGAGGAGATGGGACCGGAGGAGGGAATAAGATAATGGAGAGTGAGAAGATAGTGTATTCGTCTAGCCCGTATCCGGGGGCGGGGGCAGGGGAGAGGGGAAGGATGGTGTTCTTTGAAGGAGTGAAAAGGTTTGAGCTTGAAGATTTGCTAAGAGCATCAGCAGAGATGCTTGGAAAAGGTGGATTTGGGACATCTTATAAGGCAATTCTTGATGATGGTAATGTTGTTGCTGTCAAGAGATTGAAAGATGCACAAGTGGGAGGGAAGAGAGACTTTGAACAACATATGGAAGTTCTGGGAAGATTGAGACATGAGAACGTTGTCAGTTTCAGAGCTTATTATTTTGCTAGAGAGGAGAAGTTGTTGGTTTTTGATTACATGCCTAATGGTAGCTTGTTCTGGCTTCTTCATGGAAATAGAGGCCCCGGACGGACCCCATTAGATTGGACCACACGGCTAAAGATCGCGGCGGGCACGGCGAAAGGTCTAGCTTTCATTCACAACTCATGCAAGTCCCTAAGGCTAGCTCACGGCAATATCAAATCCACAAATGTTCTTTTAGACCAATCTGGCAATGCCCGTGTCTCTGATTTTGGTCTCTCATTTTTCACCTCCCCTTCCACTCCTCGATCCAACGGCTACCGTGCTCCTGAATCTTTGGAGGGAAGGAAACTGACTCAGAAATCAGATGTTTATTCATTTGGAGTTCTTCTTTTGGAGATGCTTACTGGAAAGTGTCCTTCTGCAGTTGATAATGGTGGGGGGTCGGGTGCCGGATACGGCGGTGGCAGCGTGCTGGATTTGCCAAGGTGGGTGCAGTCTGTGGTGAGGGAGGAATGGACAGCAGAGGTTTTTGACTTGGAGCTGATGAGGTATAAAGATATTGAAGAGGAAATGGTGGGGCTTTTGCAAATTGCTTTGGCTTGTACTTCCGTGTCCCCGGATCAGCGGCCTAAGATTAGCCATGTCGTGAAGATGATCGATGAGATTCGAGGGGTCGAGGCGTCACCGAGTCATGAGGGGTTCCACTCGGTGGTGGAGTCACCGTCTGTGTCGGAGGGCGGCAGTGGTGGAGGTGGAGGAGTCACTCAGTGA 2028 45.46 MANPTFFSLFFLCFSFLHFSSLYASPNTDLESLMAFKTATDKNNNLPHWNFSSNPCSWNGISCIRNRVSRLVLENLNLTGSFHSLTSLTQLRVLSLKRNSLSGPIPDLSNLTALKLVFLSYNQFSGNFPVSIISLFRLYRLDLSYNNLTGEIPGNVNRLVHLLTLRLESNRFSGSVSELNLLSLQDFNVSRNNLVGEIPKSLSVFPESCFGFNKGLCGFPLEKCKSFASNPTEPEPVSEPGSEGAIASPVMPPENSTVTSSPTFQTKQESAHHRGGLSTVAIIGIIVGDVIVLGVVTLLLYCYFWRSSKGKRGDGTGGGNKIMESEKIVYSSSPYPGAGAGERGRMVFFEGVKRFELEDLLRASAEMLGKGGFGTSYKAILDDGNVVAVKRLKDAQVGGKRDFEQHMEVLGRLRHENVVSFRAYYFAREEKLLVFDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGTAKGLAFIHNSCKSLRLAHGNIKSTNVLLDQSGNARVSDFGLSFFTSPSTPRSNGYRAPESLEGRKLTQKSDVYSFGVLLLEMLTGKCPSAVDNGGGSGAGYGGGSVLDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIALACTSVSPDQRPKISHVVKMIDEIRGVEASPSHEGFHSVVESPSVSEGGSGGGGGVTQ 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56335050 56337794 + evm.model.ptg000006l.455 HCH1g0752 538771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0752 675 Gene3D Transferase(Phosphotransferase) domain 1 438 655 - -
HCH1g0752 675 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
HCH1g0752 675 FunFam pollen receptor-like kinase 1 336 437 - -
HCH1g0752 675 SUPERFAMILY L domain-like 48 205 - -
HCH1g0752 675 Gene3D Ribonuclease Inhibitor 26 179 IPR032675 -
HCH1g0752 675 MobiDBLite consensus disorder prediction 230 271 - -
HCH1g0752 675 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 438 651 - -
HCH1g0752 675 FunFam Nuclear pore complex protein NUP107 26 178 - -
HCH1g0752 675 Gene3D Phosphorylase Kinase; domain 1 342 437 - -
HCH1g0752 675 ProSiteProfiles Protein kinase domain profile. 362 653 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0752 675 Gene3D Ribonuclease Inhibitor 180 228 IPR032675 -
HCH1g0752 675 MobiDBLite consensus disorder prediction 252 271 - -
HCH1g0752 675 SUPERFAMILY Protein kinase-like (PK-like) 366 638 IPR011009 -
HCH1g0752 675 MobiDBLite consensus disorder prediction 647 675 - -
HCH1g0752 675 CDD STKc_IRAK 368 641 - -
HCH1g0752 675 PANTHER OS05G0588300 PROTEIN 5 648 IPR050994 -
HCH1g0752 675 Pfam Leucine Rich Repeat 138 158 IPR001611 GO:0005515(InterPro)
HCH1g0752 675 Pfam Protein kinase domain 366 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0056 HCH-Chr11:956353 HCH1g0752 HCH-Chr1:56335050 1.40E-69 dispersed
HCH11g0057 HCH-Chr11:960348 HCH1g0752 HCH-Chr1:56335050 6.30E-72 dispersed
HCH11g0994 HCH-Chr11:41492154 HCH1g0752 HCH-Chr1:56335050 2.30E-69 dispersed
HCH13g0802 HCH-Chr13:7743305 HCH1g0752 HCH-Chr1:56335050 2.40E-58 dispersed
HCH1g0752 HCH-Chr1:56335050 HCH8g0788 HCH-Chr8:44481990 1.00E-99 dispersed
HCH1g0752 HCH-Chr1:56335050 HCH1g0754 HCH-Chr1:56359305 5.70E-90 proximal
HCH1g0752 HCH-Chr1:56335050 HCH11g0363 HCH-Chr11:3408610 1.40E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81287 PF00069 Pkinase 2.00E-36 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0752 - - - 0.0