Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0757 | ATGTTAACCACATTCACAGCCATTTACAACAGTGACGGCTGTGAAGCCGGAGGTGTCGCTACCATTACGGCTGCTCCGGCGAGCTCGCCGTCGACGAAATCATGCTCGGAAAATGCAGCGTTAGAATCGCCTATTCTCGTATTTGTCTTCTTTCACAAGGCGATTCGAGCTGAGCTTGATCACCTCCACCGCGACGCCATGGAATTCGTCACTAACAAAAACAGTGACGGTGATTTGGCGCCGTTGTTAGAACGCTACCACGTCCTTCGAGCTGTTTATAAGCATCACTGTAACGCGGAGGACGAGGTTATTTTTCCGGCGCTTGATCTACGAGTGAAAAATGTGGCGCGTACTTATTCTCTTGAACATGAAGGGGAAAGTGTTCTGTTTTGTCAATTGTTTGAGCTTTTGAATTCAAATGCATCAGAGGAAGGAAGCTATAGGAGGGAATTGGTATCTTGCGCACGAGCTCTTCAGATATCGATATGCCAGCATATGTCAAAGGAAGAGGAACAGGTCTTTCCATTACTTGTTGAGAAGTTTTCTTTCGAAGAACAGGCATCCTTGGTATGGAAATTTCTTTGTAGTATACCTATTAATATGCTGGAAGTTTTTCTTCCCTGGCTTTCTTCCTATATATCTCCAGAAGAACATCAGATTATGTGCAAGTGTTTGAGCAAAATTATCCCTGAACAAAAGCTGCTTCAGAAGGTAATATTTTCCTGGATGGAGGATTTAAGAACGTCTAATGCCAATGGAAGTTTTTATGATGAAAATTTAGATTTTCAATGTTTAGACTCTCAGGCCTGTGATTTTATATGTATGCCAGAAAAGGGGAATGACACTTTTGAATCTTCTAGAAATGGTAAAAGGAAACACGTGCAGCAAAATAACTTGACCTATTCTACTGTTTCGATCGCTTGTCCGATCAATGAAATATTACATTGGCATATTGCTATAAAGAGAGAACTGAGTAAGATGGCTCAGACAGCTAGAGACTTACGATATTCTTGTGATTTGTCTGAGTTGTCTGCATTCAGTGAGAGGCTGCAGTTTATTGCTGAAGTCTGCATCTTCCATAGCATTGCTGAGGATAAAGTTATATTCCCTGCTCTAGATGCCCATTTCTCTTTTGCTGATGAGCACGTGGAAGAAGAAATTCTATTCGATAAGCTTAGGGACTTAATAGAAAGTATACAAATTGATGAAGCTAAATATTCCTCTGCTGAATTTTATACAAAACTATGTTCTTATACTGATCAAATTATGGAAGCTGTTCAGAAGCACTTTCATAATGAGGAAATGCAGGTCCTTCCACTTGCTCGAAAGCATTTTGGCCCTCAGAGACAGCGAGAACTTCTGTATCAGAGCTTATGTGTGATGCCATTGAAATTGATTGAGCGTGTCTTACCTTGGTTGGTAGAAACACTTAGTGAAGAAGAAGCAAAATCCTTTCTTCAAAATATGCAAAGGGCAGCTCCAGAGTCAGATTATCCACTTGTTACCCTATTTTCTGGTTGGGCATGCAAAGGCCATTCTGGGAGCATTTGTTTTTCTGCAAGCGCCATGAGCTATTGTCCTGCAAGGACATTGACTGGAGATGAAGAAGCATGTTCCCGTTTGTCTTCTGCTAATGAAAAACCTTCATGCATTCAAGCAACCAAGTGTTCCAGACCGTCAAAGTGCGGAAAAGCAGTATCGCAAGTGGGCTTTAATGGCTGTCTTCCTTTGAAAAACTCGAACAAAAATCTTCAGTTCACTTGTAAAAAACAATCTTCTTGTGTTCCTGCATTAGGAGTTGATGACAGTAATTTAAGAGTGAGTTCTCTGGCTGCAGCAAAATCAATTCGTTTTTTGTCTCTCAGTCCCTATGCTCCTTCTCTGAACTCCAGTCTTTTCAGTTTGGAAAATGATCTAAGCTTTTGTGATAGTAGTTCTAAGATACGACCTATTGATAACATATTTAAATTTCACAAGGCAATAAGCAAAGACTTGGAGTATTTAGATATCGAATCAGTGAATCTCCATGATTGTGATGATAATTTCTTTCTGCAATTTTGTGGTAGATTTCGTCTGTTATGGGGTCTATACAAGGCTCACAGTAATGCAGAAGACGATATAGTATTTCCAGCATTAGAATCTAAAGAAACTCTTCATAATGTGAGCCACTCTTATACCTTGGACCACAAACAGGAGGAAGAGCTATTTGAAGGTATTTCTACTGCACTATCTAAGCTTTCATATCTACGCAAAGGCTTCAACAGCAAGAAAATGTATGATAATTCAAATGGGAGAGAATCTCATACTTTTGACATGGATTATGCTATGAGAATGAATACTGAGCTGGCAACAAAGCTTCAGGGTATGTGCAAATCCATTAGAGTAACACTTGACCAACATATTTTCCGTGAGGAATTGGAATTGTGGCCCCTGTTTGATACATATTTTTCCGTGGAAGATCAAGATAAAATTGTGGGTAGAATAATTGGTACTACAGGTGCTGAGGTTCTTCAATCAATGTTGCCTTGGGTGACTTCTGTGCTTACTCCGGAGGAGCAAAATAAAATGATGGACACATGGAAGCAGGCAACCAAAAATACGATGTTTAGTGACTGGCTAAATGAATGGTGGGAAGGAACTCCTGCTGTATCGTCACATTTTACAGAATTCGTCGGTCATATATCTGTAGATTCTGATATCAATGGGATCTGGGACCAGAAAAAGGATCCCGCTTTCAAGCCTGGATGGAAAGAAATTTTTAGGATGAATGAAAGCGAACTTGAATTAGAAATAAGAAAGGTTTCTCTGGATTCAACTATCGATCCTAGAAGGAAAGATTATCTCATCCAAAACTTAATGACCAGTCGTTGGATAGCTTCTCAGCAGAAGCTACCCCAAGCAACTACAGGTGAAAACTCGGATGCAGAAGAATTGATTGCAGGTTCCCCATCATTTCATGACCCTGAGAAACAGATTTTTGGGTGTGAGCATTACAAAAGAAATTGTAAACTGCGTGCAAATTGTTGCGGCAAGTTGTTTACTTGTAATTTCTGTCACGATAAAGTCAGTGATCATTCAATGGACAGGAAAGCTTCTACTGAAATGATGTGTATGCGCTGCCTCAAAGTTCAGCCTCTTGGATCTGTTTGCACAACACCATCTTGTGGTGGTCTCTCTATGGCGAAGTACTATTGTAGTATTTGCAAACTTTTTGATGATGAAAGGGTAGTCTATCATTGTCCTTTTTGCAATCTATGTCGTCTTGGGAAGGGACTCGGTACTGATTTTTTTCATTGCATGACGTGCAATTGTTGTATGGCAATGAAGTTGGTTGATCACAAATGCCAGGAGAGAGGCCTAGAATCAAACTGCCCTATCTGCTGTGATTTTTTGTTCACGTCTACTGAAAGCGTTAGGGCTCTACCTTGTGGTCATTTCATGCATTCAGCTTGTTTCCAGGCTTACACTTGCAGCCACTACATATGTCCAATATGTAGCAAGTCGCTAGGTGATATGGCGGTATATTTTGGCATGCTTGATGCATTACTGGCATCAGAGGTACTCCCAGAAGAATACAGGGAACTCAGTCAGGATATATTGTGCAATGACTGTTCTAACAAGGGGAAAGCACGCTTCCACTGGTTGTACCATAAATGTGGTTCATGTGGATCCTATAATACCAAGGTGATTAAGGTTAGCTCAAGCTCCGGCTCCTCGACGTTGCACTTGTGA | 3732 | 40.65 | MLTTFTAIYNSDGCEAGGVATITAAPASSPSTKSCSENAALESPILVFVFFHKAIRAELDHLHRDAMEFVTNKNSDGDLAPLLERYHVLRAVYKHHCNAEDEVIFPALDLRVKNVARTYSLEHEGESVLFCQLFELLNSNASEEGSYRRELVSCARALQISICQHMSKEEEQVFPLLVEKFSFEEQASLVWKFLCSIPINMLEVFLPWLSSYISPEEHQIMCKCLSKIIPEQKLLQKVIFSWMEDLRTSNANGSFYDENLDFQCLDSQACDFICMPEKGNDTFESSRNGKRKHVQQNNLTYSTVSIACPINEILHWHIAIKRELSKMAQTARDLRYSCDLSELSAFSERLQFIAEVCIFHSIAEDKVIFPALDAHFSFADEHVEEEILFDKLRDLIESIQIDEAKYSSAEFYTKLCSYTDQIMEAVQKHFHNEEMQVLPLARKHFGPQRQRELLYQSLCVMPLKLIERVLPWLVETLSEEEAKSFLQNMQRAAPESDYPLVTLFSGWACKGHSGSICFSASAMSYCPARTLTGDEEACSRLSSANEKPSCIQATKCSRPSKCGKAVSQVGFNGCLPLKNSNKNLQFTCKKQSSCVPALGVDDSNLRVSSLAAAKSIRFLSLSPYAPSLNSSLFSLENDLSFCDSSSKIRPIDNIFKFHKAISKDLEYLDIESVNLHDCDDNFFLQFCGRFRLLWGLYKAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEELFEGISTALSKLSYLRKGFNSKKMYDNSNGRESHTFDMDYAMRMNTELATKLQGMCKSIRVTLDQHIFREELELWPLFDTYFSVEDQDKIVGRIIGTTGAEVLQSMLPWVTSVLTPEEQNKMMDTWKQATKNTMFSDWLNEWWEGTPAVSSHFTEFVGHISVDSDINGIWDQKKDPAFKPGWKEIFRMNESELELEIRKVSLDSTIDPRRKDYLIQNLMTSRWIASQQKLPQATTGENSDAEELIAGSPSFHDPEKQIFGCEHYKRNCKLRANCCGKLFTCNFCHDKVSDHSMDRKASTEMMCMRCLKVQPLGSVCTTPSCGGLSMAKYYCSICKLFDDERVVYHCPFCNLCRLGKGLGTDFFHCMTCNCCMAMKLVDHKCQERGLESNCPICCDFLFTSTESVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEVLPEEYRELSQDILCNDCSNKGKARFHWLYHKCGSCGSYNTKVIKVSSSSGSSTLHL | 1243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 56377311 | 56384542 | + | evm.model.ptg000006l.450 | HCH1g0757 | 538776 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0757 | 1243 | FunFam | Zinc finger protein BRUTUS | 645 | 875 | - | - | |
HCH1g0757 | 1243 | Pfam | Ring finger domain | 1123 | 1165 | IPR001841 | - | |
HCH1g0757 | 1243 | Gene3D | nmb1532 protein domain like | 42 | 195 | - | - | |
HCH1g0757 | 1243 | Gene3D | nmb1532 protein domain like | 311 | 457 | - | - | |
HCH1g0757 | 1243 | CDD | Hr-like | 654 | 810 | - | - | |
HCH1g0757 | 1243 | Pfam | CHY zinc finger | 995 | 1063 | IPR008913 | GO:0008270(InterPro) | |
HCH1g0757 | 1243 | SUPERFAMILY | RING/U-box | 1123 | 1169 | - | - | |
HCH1g0757 | 1243 | ProSiteProfiles | Zinc finger RING-type profile. | 1124 | 1166 | IPR001841 | - | |
HCH1g0757 | 1243 | CDD | RING-H2_Pirh2-like | 1123 | 1166 | - | - | |
HCH1g0757 | 1243 | CDD | Hr-like | 47 | 175 | - | - | |
HCH1g0757 | 1243 | ProSiteProfiles | Zinc finger CHY-type profile. | 988 | 1057 | IPR008913 | GO:0008270(InterPro) | |
HCH1g0757 | 1243 | CDD | Hr-like | 312 | 439 | - | - | |
HCH1g0757 | 1243 | SUPERFAMILY | CHY zinc finger-like | 987 | 1051 | IPR037274 | GO:0008270(InterPro) | |
HCH1g0757 | 1243 | SMART | ring_2 | 1124 | 1165 | IPR001841 | - | |
HCH1g0757 | 1243 | Pfam | Hemerythrin HHE cation binding domain | 48 | 177 | IPR012312 | - | |
HCH1g0757 | 1243 | Pfam | Hemerythrin HHE cation binding domain | 309 | 441 | IPR012312 | - | |
HCH1g0757 | 1243 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1119 | 1168 | IPR013083 | - | |
HCH1g0757 | 1243 | Gene3D | - | 1195 | 1236 | - | - | |
HCH1g0757 | 1243 | FunFam | Zinc finger protein-related isoform 1 | 1119 | 1168 | - | - | |
HCH1g0757 | 1243 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 1060 | 1123 | IPR017921 | - | |
HCH1g0757 | 1243 | SUPERFAMILY | Zinc hairpin stack | 1061 | 1116 | IPR037275 | - | |
HCH1g0757 | 1243 | Gene3D | nmb1532 protein domain like | 644 | 872 | - | - | |
HCH1g0757 | 1243 | Pfam | Zinc-ribbon | 1171 | 1228 | IPR039512 | - | |
HCH1g0757 | 1243 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 685 | 1230 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0757 | HCH-Chr1:56377311 | HCH8g1331 | HCH-Chr8:48252633 | 2.30E-230 | dispersed | |
HCH1g0757 | HCH-Chr1:56377311 | HCH8g1157 | HCH-Chr8:47189389 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH1g0757 | K16276 | - | csv:101217252 | 1881.69 |