Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0757 ATGTTAACCACATTCACAGCCATTTACAACAGTGACGGCTGTGAAGCCGGAGGTGTCGCTACCATTACGGCTGCTCCGGCGAGCTCGCCGTCGACGAAATCATGCTCGGAAAATGCAGCGTTAGAATCGCCTATTCTCGTATTTGTCTTCTTTCACAAGGCGATTCGAGCTGAGCTTGATCACCTCCACCGCGACGCCATGGAATTCGTCACTAACAAAAACAGTGACGGTGATTTGGCGCCGTTGTTAGAACGCTACCACGTCCTTCGAGCTGTTTATAAGCATCACTGTAACGCGGAGGACGAGGTTATTTTTCCGGCGCTTGATCTACGAGTGAAAAATGTGGCGCGTACTTATTCTCTTGAACATGAAGGGGAAAGTGTTCTGTTTTGTCAATTGTTTGAGCTTTTGAATTCAAATGCATCAGAGGAAGGAAGCTATAGGAGGGAATTGGTATCTTGCGCACGAGCTCTTCAGATATCGATATGCCAGCATATGTCAAAGGAAGAGGAACAGGTCTTTCCATTACTTGTTGAGAAGTTTTCTTTCGAAGAACAGGCATCCTTGGTATGGAAATTTCTTTGTAGTATACCTATTAATATGCTGGAAGTTTTTCTTCCCTGGCTTTCTTCCTATATATCTCCAGAAGAACATCAGATTATGTGCAAGTGTTTGAGCAAAATTATCCCTGAACAAAAGCTGCTTCAGAAGGTAATATTTTCCTGGATGGAGGATTTAAGAACGTCTAATGCCAATGGAAGTTTTTATGATGAAAATTTAGATTTTCAATGTTTAGACTCTCAGGCCTGTGATTTTATATGTATGCCAGAAAAGGGGAATGACACTTTTGAATCTTCTAGAAATGGTAAAAGGAAACACGTGCAGCAAAATAACTTGACCTATTCTACTGTTTCGATCGCTTGTCCGATCAATGAAATATTACATTGGCATATTGCTATAAAGAGAGAACTGAGTAAGATGGCTCAGACAGCTAGAGACTTACGATATTCTTGTGATTTGTCTGAGTTGTCTGCATTCAGTGAGAGGCTGCAGTTTATTGCTGAAGTCTGCATCTTCCATAGCATTGCTGAGGATAAAGTTATATTCCCTGCTCTAGATGCCCATTTCTCTTTTGCTGATGAGCACGTGGAAGAAGAAATTCTATTCGATAAGCTTAGGGACTTAATAGAAAGTATACAAATTGATGAAGCTAAATATTCCTCTGCTGAATTTTATACAAAACTATGTTCTTATACTGATCAAATTATGGAAGCTGTTCAGAAGCACTTTCATAATGAGGAAATGCAGGTCCTTCCACTTGCTCGAAAGCATTTTGGCCCTCAGAGACAGCGAGAACTTCTGTATCAGAGCTTATGTGTGATGCCATTGAAATTGATTGAGCGTGTCTTACCTTGGTTGGTAGAAACACTTAGTGAAGAAGAAGCAAAATCCTTTCTTCAAAATATGCAAAGGGCAGCTCCAGAGTCAGATTATCCACTTGTTACCCTATTTTCTGGTTGGGCATGCAAAGGCCATTCTGGGAGCATTTGTTTTTCTGCAAGCGCCATGAGCTATTGTCCTGCAAGGACATTGACTGGAGATGAAGAAGCATGTTCCCGTTTGTCTTCTGCTAATGAAAAACCTTCATGCATTCAAGCAACCAAGTGTTCCAGACCGTCAAAGTGCGGAAAAGCAGTATCGCAAGTGGGCTTTAATGGCTGTCTTCCTTTGAAAAACTCGAACAAAAATCTTCAGTTCACTTGTAAAAAACAATCTTCTTGTGTTCCTGCATTAGGAGTTGATGACAGTAATTTAAGAGTGAGTTCTCTGGCTGCAGCAAAATCAATTCGTTTTTTGTCTCTCAGTCCCTATGCTCCTTCTCTGAACTCCAGTCTTTTCAGTTTGGAAAATGATCTAAGCTTTTGTGATAGTAGTTCTAAGATACGACCTATTGATAACATATTTAAATTTCACAAGGCAATAAGCAAAGACTTGGAGTATTTAGATATCGAATCAGTGAATCTCCATGATTGTGATGATAATTTCTTTCTGCAATTTTGTGGTAGATTTCGTCTGTTATGGGGTCTATACAAGGCTCACAGTAATGCAGAAGACGATATAGTATTTCCAGCATTAGAATCTAAAGAAACTCTTCATAATGTGAGCCACTCTTATACCTTGGACCACAAACAGGAGGAAGAGCTATTTGAAGGTATTTCTACTGCACTATCTAAGCTTTCATATCTACGCAAAGGCTTCAACAGCAAGAAAATGTATGATAATTCAAATGGGAGAGAATCTCATACTTTTGACATGGATTATGCTATGAGAATGAATACTGAGCTGGCAACAAAGCTTCAGGGTATGTGCAAATCCATTAGAGTAACACTTGACCAACATATTTTCCGTGAGGAATTGGAATTGTGGCCCCTGTTTGATACATATTTTTCCGTGGAAGATCAAGATAAAATTGTGGGTAGAATAATTGGTACTACAGGTGCTGAGGTTCTTCAATCAATGTTGCCTTGGGTGACTTCTGTGCTTACTCCGGAGGAGCAAAATAAAATGATGGACACATGGAAGCAGGCAACCAAAAATACGATGTTTAGTGACTGGCTAAATGAATGGTGGGAAGGAACTCCTGCTGTATCGTCACATTTTACAGAATTCGTCGGTCATATATCTGTAGATTCTGATATCAATGGGATCTGGGACCAGAAAAAGGATCCCGCTTTCAAGCCTGGATGGAAAGAAATTTTTAGGATGAATGAAAGCGAACTTGAATTAGAAATAAGAAAGGTTTCTCTGGATTCAACTATCGATCCTAGAAGGAAAGATTATCTCATCCAAAACTTAATGACCAGTCGTTGGATAGCTTCTCAGCAGAAGCTACCCCAAGCAACTACAGGTGAAAACTCGGATGCAGAAGAATTGATTGCAGGTTCCCCATCATTTCATGACCCTGAGAAACAGATTTTTGGGTGTGAGCATTACAAAAGAAATTGTAAACTGCGTGCAAATTGTTGCGGCAAGTTGTTTACTTGTAATTTCTGTCACGATAAAGTCAGTGATCATTCAATGGACAGGAAAGCTTCTACTGAAATGATGTGTATGCGCTGCCTCAAAGTTCAGCCTCTTGGATCTGTTTGCACAACACCATCTTGTGGTGGTCTCTCTATGGCGAAGTACTATTGTAGTATTTGCAAACTTTTTGATGATGAAAGGGTAGTCTATCATTGTCCTTTTTGCAATCTATGTCGTCTTGGGAAGGGACTCGGTACTGATTTTTTTCATTGCATGACGTGCAATTGTTGTATGGCAATGAAGTTGGTTGATCACAAATGCCAGGAGAGAGGCCTAGAATCAAACTGCCCTATCTGCTGTGATTTTTTGTTCACGTCTACTGAAAGCGTTAGGGCTCTACCTTGTGGTCATTTCATGCATTCAGCTTGTTTCCAGGCTTACACTTGCAGCCACTACATATGTCCAATATGTAGCAAGTCGCTAGGTGATATGGCGGTATATTTTGGCATGCTTGATGCATTACTGGCATCAGAGGTACTCCCAGAAGAATACAGGGAACTCAGTCAGGATATATTGTGCAATGACTGTTCTAACAAGGGGAAAGCACGCTTCCACTGGTTGTACCATAAATGTGGTTCATGTGGATCCTATAATACCAAGGTGATTAAGGTTAGCTCAAGCTCCGGCTCCTCGACGTTGCACTTGTGA 3732 40.65 MLTTFTAIYNSDGCEAGGVATITAAPASSPSTKSCSENAALESPILVFVFFHKAIRAELDHLHRDAMEFVTNKNSDGDLAPLLERYHVLRAVYKHHCNAEDEVIFPALDLRVKNVARTYSLEHEGESVLFCQLFELLNSNASEEGSYRRELVSCARALQISICQHMSKEEEQVFPLLVEKFSFEEQASLVWKFLCSIPINMLEVFLPWLSSYISPEEHQIMCKCLSKIIPEQKLLQKVIFSWMEDLRTSNANGSFYDENLDFQCLDSQACDFICMPEKGNDTFESSRNGKRKHVQQNNLTYSTVSIACPINEILHWHIAIKRELSKMAQTARDLRYSCDLSELSAFSERLQFIAEVCIFHSIAEDKVIFPALDAHFSFADEHVEEEILFDKLRDLIESIQIDEAKYSSAEFYTKLCSYTDQIMEAVQKHFHNEEMQVLPLARKHFGPQRQRELLYQSLCVMPLKLIERVLPWLVETLSEEEAKSFLQNMQRAAPESDYPLVTLFSGWACKGHSGSICFSASAMSYCPARTLTGDEEACSRLSSANEKPSCIQATKCSRPSKCGKAVSQVGFNGCLPLKNSNKNLQFTCKKQSSCVPALGVDDSNLRVSSLAAAKSIRFLSLSPYAPSLNSSLFSLENDLSFCDSSSKIRPIDNIFKFHKAISKDLEYLDIESVNLHDCDDNFFLQFCGRFRLLWGLYKAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEELFEGISTALSKLSYLRKGFNSKKMYDNSNGRESHTFDMDYAMRMNTELATKLQGMCKSIRVTLDQHIFREELELWPLFDTYFSVEDQDKIVGRIIGTTGAEVLQSMLPWVTSVLTPEEQNKMMDTWKQATKNTMFSDWLNEWWEGTPAVSSHFTEFVGHISVDSDINGIWDQKKDPAFKPGWKEIFRMNESELELEIRKVSLDSTIDPRRKDYLIQNLMTSRWIASQQKLPQATTGENSDAEELIAGSPSFHDPEKQIFGCEHYKRNCKLRANCCGKLFTCNFCHDKVSDHSMDRKASTEMMCMRCLKVQPLGSVCTTPSCGGLSMAKYYCSICKLFDDERVVYHCPFCNLCRLGKGLGTDFFHCMTCNCCMAMKLVDHKCQERGLESNCPICCDFLFTSTESVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEVLPEEYRELSQDILCNDCSNKGKARFHWLYHKCGSCGSYNTKVIKVSSSSGSSTLHL 1243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56377311 56384542 + evm.model.ptg000006l.450 HCH1g0757 538776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0757 1243 FunFam Zinc finger protein BRUTUS 645 875 - -
HCH1g0757 1243 Pfam Ring finger domain 1123 1165 IPR001841 -
HCH1g0757 1243 Gene3D nmb1532 protein domain like 42 195 - -
HCH1g0757 1243 Gene3D nmb1532 protein domain like 311 457 - -
HCH1g0757 1243 CDD Hr-like 654 810 - -
HCH1g0757 1243 Pfam CHY zinc finger 995 1063 IPR008913 GO:0008270(InterPro)
HCH1g0757 1243 SUPERFAMILY RING/U-box 1123 1169 - -
HCH1g0757 1243 ProSiteProfiles Zinc finger RING-type profile. 1124 1166 IPR001841 -
HCH1g0757 1243 CDD RING-H2_Pirh2-like 1123 1166 - -
HCH1g0757 1243 CDD Hr-like 47 175 - -
HCH1g0757 1243 ProSiteProfiles Zinc finger CHY-type profile. 988 1057 IPR008913 GO:0008270(InterPro)
HCH1g0757 1243 CDD Hr-like 312 439 - -
HCH1g0757 1243 SUPERFAMILY CHY zinc finger-like 987 1051 IPR037274 GO:0008270(InterPro)
HCH1g0757 1243 SMART ring_2 1124 1165 IPR001841 -
HCH1g0757 1243 Pfam Hemerythrin HHE cation binding domain 48 177 IPR012312 -
HCH1g0757 1243 Pfam Hemerythrin HHE cation binding domain 309 441 IPR012312 -
HCH1g0757 1243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1119 1168 IPR013083 -
HCH1g0757 1243 Gene3D - 1195 1236 - -
HCH1g0757 1243 FunFam Zinc finger protein-related isoform 1 1119 1168 - -
HCH1g0757 1243 ProSiteProfiles Zinc finger CTCHY-type profile. 1060 1123 IPR017921 -
HCH1g0757 1243 SUPERFAMILY Zinc hairpin stack 1061 1116 IPR037275 -
HCH1g0757 1243 Gene3D nmb1532 protein domain like 644 872 - -
HCH1g0757 1243 Pfam Zinc-ribbon 1171 1228 IPR039512 -
HCH1g0757 1243 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 685 1230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0757 HCH-Chr1:56377311 HCH8g1331 HCH-Chr8:48252633 2.30E-230 dispersed
HCH1g0757 HCH-Chr1:56377311 HCH8g1157 HCH-Chr8:47189389 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0757 K16276 - csv:101217252 1881.69