Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0771 ATGAGAATGAGTTGCAATGGTTGTCGTGTTCTTCGCAAAGGTTGTAGTGATGACTGTATCATTAGACCTTGTCTCCAATGGATACCTTCGCCGGATTCTCAAGCCAATGCCACCATCTTCCTCGCTAAATTCTACGGCCGCGCCGGCCTTTTCAACCTCATCACCACCGCCTCTGAACACCTCCGCCCTGCAATTTTCAAGTCGTTGCTATACGAGGCGTGCGGGAGAATGGTGAATCCTGTCTATGGTTCTGTCGGATTGTTGTGGTCGGGAAACTGGGAAAAGTGTCAAGCCGCCGTCGACGCCGTCTTAACAGGAACAACAACGGACATAGAATGTAACGCGCCGCCGTCTAACGCTAATCTTTCCCTCAAATCCTGCGACATTCGCCATGTCTTGAACAACCCCACCACCAATTTGGCTGTTTCCGGCGAACTTCGAAAAGTTAAGACTCGGAACCGGTTCAAGAAACCAGATCACCGAACCAAACCCAAACCCGGTTCGGGTGAAGAGTTGGGAATTGGGTCCAATGTGGCCGAGTCTGAAGCAAATATAACCTCTATGACCACGGAACAGGTGGAGAGTTTCGTGATGAACCGGTCGATAAAGCCGAACCCGAATTCAACGTTTGGAAACCGGTCCAGAAGTGGAGTTGTTGAGCTGGAATTGAGTTTGAACCCGGCTCAATAA 690 50.14 MRMSCNGCRVLRKGCSDDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITTASEHLRPAIFKSLLYEACGRMVNPVYGSVGLLWSGNWEKCQAAVDAVLTGTTTDIECNAPPSNANLSLKSCDIRHVLNNPTTNLAVSGELRKVKTRNRFKKPDHRTKPKPGSGEELGIGSNVAESEANITSMTTEQVESFVMNRSIKPNPNSTFGNRSRSGVVELELSLNPAQ 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56481577 56482859 + evm.model.ptg000006l.436 HCH1g0771 538790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0771 229 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
HCH1g0771 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 195 - GO:0010468(PANTHER)
HCH1g0771 229 MobiDBLite consensus disorder prediction 153 187 - -
HCH1g0771 229 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0771 HCH-Chr1:56481577 HCH8g1172 HCH-Chr8:47293041 1.80E-56 wgd
HCH1g0771 HCH-Chr1:56481577 HCH9g0366 HCH-Chr9:2278680 1.30E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33080 PF03195 LOB 8.00E-24 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0771 - - - 0.0