Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0771 | ATGAGAATGAGTTGCAATGGTTGTCGTGTTCTTCGCAAAGGTTGTAGTGATGACTGTATCATTAGACCTTGTCTCCAATGGATACCTTCGCCGGATTCTCAAGCCAATGCCACCATCTTCCTCGCTAAATTCTACGGCCGCGCCGGCCTTTTCAACCTCATCACCACCGCCTCTGAACACCTCCGCCCTGCAATTTTCAAGTCGTTGCTATACGAGGCGTGCGGGAGAATGGTGAATCCTGTCTATGGTTCTGTCGGATTGTTGTGGTCGGGAAACTGGGAAAAGTGTCAAGCCGCCGTCGACGCCGTCTTAACAGGAACAACAACGGACATAGAATGTAACGCGCCGCCGTCTAACGCTAATCTTTCCCTCAAATCCTGCGACATTCGCCATGTCTTGAACAACCCCACCACCAATTTGGCTGTTTCCGGCGAACTTCGAAAAGTTAAGACTCGGAACCGGTTCAAGAAACCAGATCACCGAACCAAACCCAAACCCGGTTCGGGTGAAGAGTTGGGAATTGGGTCCAATGTGGCCGAGTCTGAAGCAAATATAACCTCTATGACCACGGAACAGGTGGAGAGTTTCGTGATGAACCGGTCGATAAAGCCGAACCCGAATTCAACGTTTGGAAACCGGTCCAGAAGTGGAGTTGTTGAGCTGGAATTGAGTTTGAACCCGGCTCAATAA | 690 | 50.14 | MRMSCNGCRVLRKGCSDDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITTASEHLRPAIFKSLLYEACGRMVNPVYGSVGLLWSGNWEKCQAAVDAVLTGTTTDIECNAPPSNANLSLKSCDIRHVLNNPTTNLAVSGELRKVKTRNRFKKPDHRTKPKPGSGEELGIGSNVAESEANITSMTTEQVESFVMNRSIKPNPNSTFGNRSRSGVVELELSLNPAQ | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 56481577 | 56482859 | + | evm.model.ptg000006l.436 | HCH1g0771 | 538790 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0771 | 229 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
HCH1g0771 | 229 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 195 | - | GO:0010468(PANTHER) | |
HCH1g0771 | 229 | MobiDBLite | consensus disorder prediction | 153 | 187 | - | - | |
HCH1g0771 | 229 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 103 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0771 | HCH-Chr1:56481577 | HCH8g1172 | HCH-Chr8:47293041 | 1.80E-56 | wgd | |
HCH1g0771 | HCH-Chr1:56481577 | HCH9g0366 | HCH-Chr9:2278680 | 1.30E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33080 | PF03195 | LOB | 8.00E-24 | No_clan | HCH | TF |
Pathway information
