Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0801 ATGAAATTTCTTGAGAAAATGTTGGATTTTGAAGTCATGGGAATGGATTTGAGACAGTATGCTGATGCTTTGGATCAAGAACGTTGTAAAATTCAAGTTTTTCAACGGGAACTTCCTCTTTGCTTGGACCTTGTTACACGAGCGATTGAATCTTGCCGGCAGCATTTGTCGGGGACGACGACGGAGAATTTTCCCGGTGGATTATCTGAGAGCTCGGAGCATACCACGTCGAGTGATGGTCCAGTTTTGGAGGAATTTATTCCCATTAAAAGAAATTTATCCTCTTGTTTTCATAATGAAGAGAATCAATCCGGCTCCGGCGACGGTGTTTTTGATAAGAAAGAAGCTGGTCGTTCAGATTGGCTTAAATCTGCTCAGCTTTGGAATCAATCACCGGATCCTCCCGTTAAAAAAGTTATTCCTGAGAAAACAACGGTTGTTGAGGTAAAGAAAAATAGCGGTGGGGGAGCTTTTCAGCCATTTAAAAAAGATAAAGCTTTGTTGAAGACTAACCCATCAGTCTCGGAGGCCACGACAAGCTCGACGGCGGAAACAGCCACCGGAGGCAGTGGCGGAAGTGGAACAAGTAAACGAGAGGAGAAGGAATCATCACAAACTCAACGAAAGACGAGACGGTGTTGGTCGTCGGAGTTACACCGACGATTCTTACACGCCCTTCAACAGCTCGGTGGCCCTCACGTTGCTACACCAAAACAAATAAGAGAATTAATGAAGGTCGATGGACTCACCAACGATGAAGTCAAAAGCCATTTGCAGAAATATCGTTTACACGCAAGAAGGCCAACTCCTACAATGCAAAACAATAGCAGCTCAGCCACAGCTTCAGAACCATCGCCGCAATTTCTGGTGGTCGGAAGCATATGGGTTCCTCCGCCGCCACCTGAATATTCACCGGCGACAGCGTCGGGAGAGGTTTCTGGTGTCAGTTTAGGAAATGGGGTTTATGCTCCGGTGGCGACACCGTTGCCTTCTTCAATCAAAACTCAAAGGGCACGGCGGAAGACGTCGGATCAATCGGAGGAAGGAAAGGCGAGCCATAGTGCCGGAGTTGTTCATTCCAATTCTCCGGCGACTTCTTGCTCCACGAACACTACCACCTCTACCTCGCCGTCGTCGGTGTAG 1143 47.51 MKFLEKMLDFEVMGMDLRQYADALDQERCKIQVFQRELPLCLDLVTRAIESCRQHLSGTTTENFPGGLSESSEHTTSSDGPVLEEFIPIKRNLSSCFHNEENQSGSGDGVFDKKEAGRSDWLKSAQLWNQSPDPPVKKVIPEKTTVVEVKKNSGGGAFQPFKKDKALLKTNPSVSEATTSSTAETATGGSGGSGTSKREEKESSQTQRKTRRCWSSELHRRFLHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTPTMQNNSSSATASEPSPQFLVVGSIWVPPPPPEYSPATASGEVSGVSLGNGVYAPVATPLPSSIKTQRARRKTSDQSEEGKASHSAGVVHSNSPATSCSTNTTTSTSPSSV 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56695900 56697651 - evm.model.ptg000006l.406 HCH1g0801 538820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0801 380 MobiDBLite consensus disorder prediction 59 80 - -
HCH1g0801 380 MobiDBLite consensus disorder prediction 355 380 - -
HCH1g0801 380 MobiDBLite consensus disorder prediction 171 194 - -
HCH1g0801 380 Gene3D - 208 265 - -
HCH1g0801 380 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
HCH1g0801 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 266 IPR017930 -
HCH1g0801 380 Pfam Myb-like DNA-binding domain 211 262 IPR001005 -
HCH1g0801 380 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 349 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0801 380 MobiDBLite consensus disorder prediction 195 214 - -
HCH1g0801 380 MobiDBLite consensus disorder prediction 169 214 - -
HCH1g0801 380 MobiDBLite consensus disorder prediction 59 79 - -
HCH1g0801 380 Coils Coil 17 37 - -
HCH1g0801 380 MobiDBLite consensus disorder prediction 305 380 - -
HCH1g0801 380 FunFam Myb family transcription factor 208 266 - -
HCH1g0801 380 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 264 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0443 HCH-Chr10:3533464 HCH1g0801 HCH-Chr1:56695900 1.70E-18 dispersed
HCH1g0801 HCH-Chr1:56695900 HCH8g0792 HCH-Chr8:44509262 3.80E-43 dispersed
HCH1g0801 HCH-Chr1:56695900 HCH10g1250 HCH-Chr10:44411445 1.20E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33083 PF00249 Myb_DNA-binding 2.40E-05 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0801 - - - 0.0