Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0801 ATGAAATTTCTTGAGAAAATGTTGGATTTTGAAGTCATGGGAATGGATTTGAGACAGTATGCTGATGCTTTGGATCAAGAACGTTGTAAAATTCAAGTTTTTCAACGGGAACTTCCTCTTTGCTTGGACCTTGTTACACGAGCGATTGAATCTTGCCGGCAGCATTTGTCGGGGACGACGACGGAGAATTTTCCCGGTGGATTATCTGAGAGCTCGGAGCATACCACGTCGAGTGATGGTCCAGTTTTGGAGGAATTTATTCCCATTAAAAGAAATTTATCCTCTTGTTTTCATAATGAAGAGAATCAATCCGGCTCCGGCGACGGTGTTTTTGATAAGAAAGAAGCTGGTCGTTCAGATTGGCTTAAATCTGCTCAGCTTTGGAATCAATCACCGGATCCTCCCGTTAAAAAAGTTATTCCTGAGAAAACAACGGTTGTTGAGGTAAAGAAAAATAGCGGTGGGGGAGCTTTTCAGCCATTTAAAAAAGATAAAGCTTTGTTGAAGACTAACCCATCAGTCTCGGAGGCCACGACAAGCTCGACGGCGGAAACAGCCACCGGAGGCAGTGGCGGAAGTGGAACAAGTAAACGAGAGGAGAAGGAATCATCACAAACTCAACGAAAGACGAGACGGTGTTGGTCGTCGGAGTTACACCGACGATTCTTACACGCCCTTCAACAGCTCGGTGGCCCTCACGTTGCTACACCAAAACAAATAAGAGAATTAATGAAGGTCGATGGACTCACCAACGATGAAGTCAAAAGCCATTTGCAGAAATATCGTTTACACGCAAGAAGGCCAACTCCTACAATGCAAAACAATAGCAGCTCAGCCACAGCTTCAGAACCATCGCCGCAATTTCTGGTGGTCGGAAGCATATGGGTTCCTCCGCCGCCACCTGAATATTCACCGGCGACAGCGTCGGGAGAGGTTTCTGGTGTCAGTTTAGGAAATGGGGTTTATGCTCCGGTGGCGACACCGTTGCCTTCTTCAATCAAAACTCAAAGGGCACGGCGGAAGACGTCGGATCAATCGGAGGAAGGAAAGGCGAGCCATAGTGCCGGAGTTGTTCATTCCAATTCTCCGGCGACTTCTTGCTCCACGAACACTACCACCTCTACCTCGCCGTCGTCGGTGTAG 1143 47.51 MKFLEKMLDFEVMGMDLRQYADALDQERCKIQVFQRELPLCLDLVTRAIESCRQHLSGTTTENFPGGLSESSEHTTSSDGPVLEEFIPIKRNLSSCFHNEENQSGSGDGVFDKKEAGRSDWLKSAQLWNQSPDPPVKKVIPEKTTVVEVKKNSGGGAFQPFKKDKALLKTNPSVSEATTSSTAETATGGSGGSGTSKREEKESSQTQRKTRRCWSSELHRRFLHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTPTMQNNSSSATASEPSPQFLVVGSIWVPPPPPEYSPATASGEVSGVSLGNGVYAPVATPLPSSIKTQRARRKTSDQSEEGKASHSAGVVHSNSPATSCSTNTTTSTSPSSV 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56695900 56697651 - evm.model.ptg000006l.406 HCH1g0801 538820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0801 380 MobiDBLite consensus disorder prediction 59 80 - -
HCH1g0801 380 MobiDBLite consensus disorder prediction 355 380 - -
HCH1g0801 380 MobiDBLite consensus disorder prediction 171 194 - -
HCH1g0801 380 Gene3D - 208 265 - -
HCH1g0801 380 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
HCH1g0801 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 266 IPR017930 -
HCH1g0801 380 Pfam Myb-like DNA-binding domain 211 262 IPR001005 -
HCH1g0801 380 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 349 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0801 380 MobiDBLite consensus disorder prediction 195 214 - -
HCH1g0801 380 MobiDBLite consensus disorder prediction 169 214 - -
HCH1g0801 380 MobiDBLite consensus disorder prediction 59 79 - -
HCH1g0801 380 Coils Coil 17 37 - -
HCH1g0801 380 MobiDBLite consensus disorder prediction 305 380 - -
HCH1g0801 380 FunFam Myb family transcription factor 208 266 - -
HCH1g0801 380 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 264 IPR006447 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0801 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0443 HCH-Chr10:3533464 HCH1g0801 HCH-Chr1:56695900 1.70E-18 dispersed
HCH1g0801 HCH-Chr1:56695900 HCH8g0792 HCH-Chr8:44509262 3.80E-43 dispersed
HCH1g0801 HCH-Chr1:56695900 HCH10g1250 HCH-Chr10:44411445 1.20E-73 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH5g0246 . 176 377 G2-like Transcription Factor Family AT5G16560 51.2 9.4e-40 161.4
HCH4g0682 . 1 183 G2-like Transcription Factor Family AT5G42630 59.5 8.3e-46 180.6
HCH12g0669 . 12 175 G2-like Transcription Factor Family AT5G42630 60.2 1.4e-40 163.3
HCH8g0792 . 3 339 G2-like Transcription Factor Family AT2G03500 50.4 6.0e-77 285.0
HCH1g0801 . 1 259 G2-like Transcription Factor Family AT1G25550 53.7 3.3e-52 202.2
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT1G25550 54.6 8.1e-51 197.6
HCH1g0801 . 19 269 G2-like Transcription Factor Family AT3G25790 50.2 2.6e-43 172.6
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT3G25790 51.3 6.0e-40 161.4
HCH3g1389 . 1 263 G2-like Transcription Factor Family AT3G46640 52.0 5.4e-54 208.4
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT5G05090 55.6 3.6e-72 268.5
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT5G05090 55.5 3.7e-69 258.5
HCH7g1427 . 13 309 G2-like Transcription Factor Family AT4G13640 53.3 4.6e-52 201.8
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH4g0893 . 6 230 G2-like Transcription Factor Family AT1G69580 55.9 2.0e-51 199.9
HCH7g0014 . 1 385 G2-like Transcription Factor Family AT1G79430 53.4 7.2e-84 307.8
HCH2g0956 . 1 363 G2-like Transcription Factor Family AT1G79430 56.3 4.7e-83 305.1
HCH7g1427 . 38 197 G2-like Transcription Factor Family AT1G79430 61.4 2.3e-37 153.3
HCH14g0730 . 54 292 G2-like Transcription Factor Family AT2G01060 60.9 2.1e-55 212.6
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT3G10760 61.3 2.2e-90 329.3
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT3G10760 61.3 1.6e-85 313.2
HCH9g0976 . 1 201 G2-like Transcription Factor Family AT2G40970 61.6 7.8e-61 230.7
HCH9g1278 . 1 201 G2-like Transcription Factor Family AT2G40970 58.3 4.3e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013799 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33083 PF00249 Myb_DNA-binding 2.40E-05 CL0123 HCH TF