Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0802 ATGGATGGAATTTGTATTGAAGATAGCTCCACCACTGAATCTCAATCCACTACTTCCAATAATACTTCATTTTCTCCCTTTCCTTTCCCTTCTCTTAAGTCTCCACCTCCACCGCCACCCGTCAATACTCTCTCCCGTGTCGGGAGCGGTGCGAGCGTCGTTCTTGACACGGACTCCAGTGGAGTAGAAGCCGAGTCCCGAAAACTCCCCTCTTCGCGCTACAAAGGCGTGGTTCCACAACCTAACGGCCGATGGGGCGCGCAAATCTACGAAAAGCATCAACGGGTTTGGCTCGGCACCTTCAACGAGGAGGATGAAGCCGCTAGGGCTTACGACGTCGCGGCGCAGCGTTTCCGCGGCCGCGACGCCGTAACGAATTTCAAACCCCTCTCCCTATCCCGCTCCCCGCATGTCGGCGAAGAAAACGACGTGGTGGAATCCGCTTTCTTGAATTCACATTCGAAAGCGGAGATAGTTGACATGTTACGTAAACATACTTACTACGACGAACTCCAACAAAGCAAACGTAACGCCGGATTCCTCGACGCGAATGGGAAGCTGAACCGGACACCGGTTGGTTCAGACCGGGATCCGGTTGCACGTGAACTTCTATTCGAAAAAGCCGTAACTCCCAGCGACGTTGGGAAGTTGAACCGGCTAGTGATTCCAAAGCAACACGCTGAGAAAAACTTCCCTCTTCAATCAGGAACGGCGTCTCCAAAAGGGTTGTTGTTGAATTTCGAAGATGTTGGAGGAAAAGTATGGAGATTTAGATACTCGTATTGGAATAGCAGTCAAAGCTATGTTTTGACAAAAGGGTGGAGCCGGTTCGTGAAAGAGAAGAATTTGAAAGCTGGTGACATTGTTAGTTTCTTGAAATCTACCGGAGAAGATAAACAACTTTATATCGAATGGAAAGCTCGAAAGACGACGACGACGACGATCACGACAACCGGGACGTGTCTGAACCCGGTCGAGACGGTTCAGACAGTGAGGCTGTTTGGGGTTAATATTTTTAAGGTAACAGGAAATAGTGTGGATAATTCAAGTGGGTGTAATGAGAAGAGGAGAAGAGAACTGGATTTTTTGGCATTGGAATGTAGTAAGAAGCAAAGGGTCGTTGGAGCATTGTAA 1134 48.85 MDGICIEDSSTTESQSTTSNNTSFSPFPFPSLKSPPPPPPVNTLSRVGSGASVVLDTDSSGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLSLSRSPHVGEENDVVESAFLNSHSKAEIVDMLRKHTYYDELQQSKRNAGFLDANGKLNRTPVGSDRDPVARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQSGTASPKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGEDKQLYIEWKARKTTTTTITTTGTCLNPVETVQTVRLFGVNIFKVTGNSVDNSSGCNEKRRRELDFLALECSKKQRVVGAL 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56706788 56707921 - evm.model.ptg000006l.405 HCH1g0802 538821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0802 377 ProSiteProfiles B3 DNA-binding domain profile. 205 309 IPR003340 GO:0003677(InterPro)
HCH1g0802 377 MobiDBLite consensus disorder prediction 7 28 - -
HCH1g0802 377 MobiDBLite consensus disorder prediction 1 82 - -
HCH1g0802 377 FunFam AP2 domain-containing protein RAP2.8 72 129 - -
HCH1g0802 377 SMART B3_2 205 309 IPR003340 GO:0003677(InterPro)
HCH1g0802 377 MobiDBLite consensus disorder prediction 29 43 - -
HCH1g0802 377 ProSiteProfiles AP2/ERF domain profile. 73 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0802 377 Pfam AP2 domain 72 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0802 377 Gene3D AP2/ERF domain 72 129 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0802 377 Pfam B3 DNA binding domain 205 305 IPR003340 GO:0003677(InterPro)
HCH1g0802 377 SUPERFAMILY DNA-binding pseudobarrel domain 203 297 IPR015300 -
HCH1g0802 377 SUPERFAMILY DNA-binding domain 72 128 IPR016177 GO:0003677(InterPro)
HCH1g0802 377 Gene3D - 195 319 IPR015300 -
HCH1g0802 377 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 72 338 IPR044800 GO:0003700(InterPro)
HCH1g0802 377 SMART rav1_2 73 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0802 377 CDD B3_DNA 204 291 IPR003340 GO:0003677(InterPro)
HCH1g0802 377 CDD AP2 72 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0802 HCH-Chr1:56706788 HCH8g0924 HCH-Chr8:45540073 4.10E-45 dispersed
HCH11g0442 HCH-Chr11:4388270 HCH1g0802 HCH-Chr1:56706788 2.70E-38 transposed
HCH5g0612 HCH-Chr5:4302873 HCH1g0802 HCH-Chr1:56706788 2.10E-39 transposed
HCH8g0487 HCH-Chr8:41117571 HCH1g0802 HCH-Chr1:56706788 3.60E-44 transposed
HCH1g0802 HCH-Chr1:56706788 HCH10g1245 HCH-Chr10:44281681 1.30E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33084 PF02362 B3 4.30E-28 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0802 K09287 - csv:101203784 516.538