Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH1g0806 | ATGTGTGGGAAGGAAGAAGAAGATCATCAACAAGGTGGTGGAGAGTGTTCACAAACAATTGAAAACATGTTCCAGGAACAGTTGCTTCTCCACCACCACCAACAACAACAACAACTTCAAAACAATAATGAAATCATCAATATGTATGGAGATCATCATCATGGAGGAAGAGGGTTGATTTTTCCAACTGCCAGCGACGTTGTCCCACCGATCTTGCAGCCGTGGCCGCCTCTCCCTGCTGCTCAACTACACGCTGCTGCCGCCTCATTTGCCGCAAACCCGGTCCGACAACATAATCCATTTTTACTCCCACATCCTCCTCTTCTTCCACCACCAACATCAATATTATCTTCTTCCTTATCATCATCATCATCATATGCTAGTTTGTTTAACAGGAGATCATCTCCTAATTCTCTGCAGTTTGCTTACGATGGTCCATCAACCGACCACCTCGGCAGAATCTTATCGAACACACTCGGACCGGTGGTTCATCCTGGTTCATCAGCTCCCTTTGGTCTGCAAGCTGAGCTTGGTAAGCTGACTGCTCAAGAAATCATGGATGCTAAAGCTCTTGCTGCTTCTAAAAGTCACAGTGAAGCTGAAAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGCTCCGAAGCTTACTTCCTAGTACCACTAAAACAGACAAAGCTTCATTACTAGCCGAAGTAATACAACACGTGAAAGAGCTAAAGAGACAGACATCTTTGATAGCTGAAACAAGTCCAATTCCCACTGAAGTTGATGAGTTAACTGTCGACGATGCTTCGGATGATGAAACCGGCAAATTTGTAATAAAAGCTTCACTTTGTTGCGAAGACCGCTCTGATCTTCTTCCTGATCTTATCAAAACCCTTAAAGCTTTGCGTTTAAGAACTGTAAAAGCTGAAATCACAACCCTTGGAGGCCGTGTAAGGAATGTCTTGTTCGTTACCGGAGATGACGATTCGGGCGCTATCGATACCAACTCCGATGATCAACAACAACAACTTAATGTAAGTTCAATTCAAGAAGCACTCAAGGCAGTGATGGAGAAGACGGGAGGAGATGATTCTTCTTCTGGAAATATAAAAAGGCAAAGAACAAACAATATCAATATCCTTTAA | 1137 | 43.1 | MCGKEEEDHQQGGGECSQTIENMFQEQLLLHHHQQQQQLQNNNEIINMYGDHHHGGRGLIFPTASDVVPPILQPWPPLPAAQLHAAAASFAANPVRQHNPFLLPHPPLLPPPTSILSSSLSSSSSYASLFNRRSSPNSLQFAYDGPSTDHLGRILSNTLGPVVHPGSSAPFGLQAELGKLTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTEVDELTVDDASDDETGKFVIKASLCCEDRSDLLPDLIKTLKALRLRTVKAEITTLGGRVRNVLFVTGDDDSGAIDTNSDDQQQQLNVSSIQEALKAVMEKTGGDDSSSGNIKRQRTNNINIL | 378 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 56753004 | 56755093 | - | evm.model.ptg000006l.401 | HCH1g0806 | 538825 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH1g0806 | 378 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 165 | 372 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| HCH1g0806 | 378 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 196 | 248 | IPR036638 | GO:0046983(InterPro) | |
| HCH1g0806 | 378 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 192 | 241 | IPR011598 | GO:0046983(InterPro) | |
| HCH1g0806 | 378 | SMART | finulus | 198 | 247 | IPR011598 | GO:0046983(InterPro) | |
| HCH1g0806 | 378 | CDD | bHLH_AtAIG1_like | 187 | 264 | - | - | |
| HCH1g0806 | 378 | Gene3D | - | 187 | 248 | IPR036638 | GO:0046983(InterPro) | |
| HCH1g0806 | 378 | MobiDBLite | consensus disorder prediction | 359 | 378 | - | - | |
| HCH1g0806 | 378 | Pfam | Helix-loop-helix DNA-binding domain | 195 | 242 | IPR011598 | GO:0046983(InterPro) | |
| HCH1g0806 | 378 | MobiDBLite | consensus disorder prediction | 356 | 378 | - | - | |
| HCH1g0806 | 378 | FunFam | transcription factor bHLH30 | 187 | 250 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH14g0452 | HCH-Chr14:33535266 | HCH1g0806 | HCH-Chr1:56753004 | 5.00E-16 | dispersed | |
| HCH1g0806 | HCH-Chr1:56753004 | HCH9g1299 | HCH-Chr9:40808004 | 8.00E-41 | dispersed | |
| HCH13g0559 | HCH-Chr13:3966357 | HCH1g0806 | HCH-Chr1:56753004 | 9.80E-32 | transposed | |
| HCH1g0806 | HCH-Chr1:56753004 | HCH10g1237 | HCH-Chr10:44052016 | 1.80E-93 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33086 | PF00010 | HLH | 1.90E-12 | No_clan | HCH | TF |
Pathway information