Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0806 ATGTGTGGGAAGGAAGAAGAAGATCATCAACAAGGTGGTGGAGAGTGTTCACAAACAATTGAAAACATGTTCCAGGAACAGTTGCTTCTCCACCACCACCAACAACAACAACAACTTCAAAACAATAATGAAATCATCAATATGTATGGAGATCATCATCATGGAGGAAGAGGGTTGATTTTTCCAACTGCCAGCGACGTTGTCCCACCGATCTTGCAGCCGTGGCCGCCTCTCCCTGCTGCTCAACTACACGCTGCTGCCGCCTCATTTGCCGCAAACCCGGTCCGACAACATAATCCATTTTTACTCCCACATCCTCCTCTTCTTCCACCACCAACATCAATATTATCTTCTTCCTTATCATCATCATCATCATATGCTAGTTTGTTTAACAGGAGATCATCTCCTAATTCTCTGCAGTTTGCTTACGATGGTCCATCAACCGACCACCTCGGCAGAATCTTATCGAACACACTCGGACCGGTGGTTCATCCTGGTTCATCAGCTCCCTTTGGTCTGCAAGCTGAGCTTGGTAAGCTGACTGCTCAAGAAATCATGGATGCTAAAGCTCTTGCTGCTTCTAAAAGTCACAGTGAAGCTGAAAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGCTCCGAAGCTTACTTCCTAGTACCACTAAAACAGACAAAGCTTCATTACTAGCCGAAGTAATACAACACGTGAAAGAGCTAAAGAGACAGACATCTTTGATAGCTGAAACAAGTCCAATTCCCACTGAAGTTGATGAGTTAACTGTCGACGATGCTTCGGATGATGAAACCGGCAAATTTGTAATAAAAGCTTCACTTTGTTGCGAAGACCGCTCTGATCTTCTTCCTGATCTTATCAAAACCCTTAAAGCTTTGCGTTTAAGAACTGTAAAAGCTGAAATCACAACCCTTGGAGGCCGTGTAAGGAATGTCTTGTTCGTTACCGGAGATGACGATTCGGGCGCTATCGATACCAACTCCGATGATCAACAACAACAACTTAATGTAAGTTCAATTCAAGAAGCACTCAAGGCAGTGATGGAGAAGACGGGAGGAGATGATTCTTCTTCTGGAAATATAAAAAGGCAAAGAACAAACAATATCAATATCCTTTAA 1137 43.1 MCGKEEEDHQQGGGECSQTIENMFQEQLLLHHHQQQQQLQNNNEIINMYGDHHHGGRGLIFPTASDVVPPILQPWPPLPAAQLHAAAASFAANPVRQHNPFLLPHPPLLPPPTSILSSSLSSSSSYASLFNRRSSPNSLQFAYDGPSTDHLGRILSNTLGPVVHPGSSAPFGLQAELGKLTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTEVDELTVDDASDDETGKFVIKASLCCEDRSDLLPDLIKTLKALRLRTVKAEITTLGGRVRNVLFVTGDDDSGAIDTNSDDQQQQLNVSSIQEALKAVMEKTGGDDSSSGNIKRQRTNNINIL 378
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 56753004 56755093 - evm.model.ptg000006l.401 HCH1g0806 538825
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0806 378 PANTHER TRANSCRIPTION FACTOR BHLH30 165 372 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0806 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 248 IPR036638 GO:0046983(InterPro)
HCH1g0806 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 192 241 IPR011598 GO:0046983(InterPro)
HCH1g0806 378 SMART finulus 198 247 IPR011598 GO:0046983(InterPro)
HCH1g0806 378 CDD bHLH_AtAIG1_like 187 264 - -
HCH1g0806 378 Gene3D - 187 248 IPR036638 GO:0046983(InterPro)
HCH1g0806 378 MobiDBLite consensus disorder prediction 359 378 - -
HCH1g0806 378 Pfam Helix-loop-helix DNA-binding domain 195 242 IPR011598 GO:0046983(InterPro)
HCH1g0806 378 MobiDBLite consensus disorder prediction 356 378 - -
HCH1g0806 378 FunFam transcription factor bHLH30 187 250 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0452 HCH-Chr14:33535266 HCH1g0806 HCH-Chr1:56753004 5.00E-16 dispersed
HCH1g0806 HCH-Chr1:56753004 HCH9g1299 HCH-Chr9:40808004 8.00E-41 dispersed
HCH13g0559 HCH-Chr13:3966357 HCH1g0806 HCH-Chr1:56753004 9.80E-32 transposed
HCH1g0806 HCH-Chr1:56753004 HCH10g1237 HCH-Chr10:44052016 1.80E-93 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33086 PF00010 HLH 1.90E-12 No_clan HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0806 - - - 0.0