Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0823 ATGAGTGGTGGGAGAAGGAGAAAGCTGCATTTTAGCAAGATCTATTCTTTTGCATGTGGGAAAGCTTCTTTAAAGGATGATCATTCACAAATTGGGGGACCAGGATTTTGCAGGGTGGTATTCTGCAATGAGCCAGAGTGTTTTGAGGCCGGAATTCGAAACTACGCCGATAATTATGTTAGTACTACCAAGTATACACTAGCTACTTTCCTGCCCAAGTCATTGTTTGAGCAATTTAGGAGGGTGGCCAATTTCTACTTCTTGATCAGTGGTATTCTTGCTTTCACCCCACTTGCTCCTTACACAGCTGTCAGTGCTATTCTCCCTCTTATTCTAGTTATTTCAGCAACAATGACCAAAGAAGGGATTGAAGATTGGAGAAGACAAAAGCAGGATATTGAGGTTAACAATAGAAAGGTTAAAGTGCATGGAGGTGATGGGATTTTTGCTTATACAGAATGGAAGAATCTGAGGGTGGGGGATATAGTGAAAGTGGAGAAGGATGAATTTTTTCCAGCAGATATCGTCTTGCTTTCGTCCAGTTACGAGGATGCAATCTGCTATGTTGAGACAATGAACCTTGATGGTGAGACAAATTTGAAATTAAAACAAGCATTGGAGGTAACTTCTCATGTGAACGAGGATTCTATCTTCAGAAGCTTTAAGGCTGTTATAAAGTGTGAGGATCCAAATGCAAATTTATACTCTTTTGTTGGCAGCATGGAGTTTCAAGAGCAACAATATCCTCTTTCTCCTCAACAACTACTCCTTAGAGACTCTAAACTCCGTAATACCGATTATATATATGGGGCTGTTGTCTTCACTGGTCGTGAAACGAAGGTTATTCAAAATTCTACCGACCCCCCTTCAAAGAGGAGCAACATTGAGAAGAAGATGGATAGAATTATATATCTTCTGTTCTGTGTTCTTTTTTTGCTGGCTCTTGTAGGATCAATATTCTTTGGCATTGCAACCGAAGATGATTTGCAAAATGGGAGCATGAAGAGATGGTATCTAAGGCCTGATGATGCAAAAATTTTCTTTGATCCAAAAAGGGCACCAATGGCTGCTATTTTTCATTTTCTTACAGCACTGATGTTATATAACTACTTCATTCCAATTTCTTTGTATGTATCAATTGAAATTGTTAAGGTTCTTCAGAGCATATTTATCAATCAAGATATTCATATGTATTATGAAGAAGCTGATAAACCTGCACATGCTCGTACCTCAAATTTGAATGAAGAACTTGGTCAAGTTCATACAATACTTTCTGACAAGACAGGAACACTGACCTGCAATTCAATGGAGTTCATAAAGTGTTCTGTGGCAGGGAGCGCTTATGGTCGTGGTTTCACGGAGGTAGAAAGGGCCATGAGTAGAAGAAAAGATTCACCATTGCACAAAGCTGTAAATGGGTGGAATCACAATGAGGATGTCACTGATAAGAATGCACATATCAAGGGCTTTAATTTTAAGGATGACAGGATTATGAATGGAAACTGGGTCAACGAGCCACGTGCAGATGTCATTCAAATGTTTTTCTGTGTTCTAGCGACTTGTCATACAGCAATCCCTGAAATCAATGAGGAGACAGGAAAGGTTTCTTACGAGGCAGAATCACCGGATGAAGCGGCATTTGTGATTGCAGCTAGAGAACTTGGCTTTGAGTTCTACAAAAGAACACAGACAAGCATATCCCTGCATGAGTTTGATCCTACATTAGGCAAGAGAGTTGAAAGGACATATAAACTGCTGCATGTTTTGGAGTTTAATAGCTCAAGGAAACGGATGTCTGTCATACTAAGAAACGAGGAGGGGAAAATATTGTTGTTCTCTAAAGGTGCTGACAGTGTCATGTTTGAAATGCTTGCAAAGAGTGGTCGGGAGTTTGAAGAGGAGACTAAGAAACACGTCAGTGAGTATGCTGATGCAGGGTTGAGGACATTAATACTTGCCTATCGTGAACTTGGAGAGGAAGAATACAGAGAATTTGATGACAAGTTCACCAAGGCCAAAAATTCAGTTAGTGCAGACCGAGAATCATTGATTGATAAAGTAACAGACAAAATTGAGAGGAATCTAATTCTTCTTGGTGCCACTGCTGTTGAGGACAAGCTCCAAAATGGGGTTCCTGATTGTATTGACAAGCTAGCTCAGGCAGGAATTAAGATTTGGGTTTTGACTGGGGATAAAATGGAGACGGCCATAAATATTGGCTTTGCCTGTAGTTTGCTAAGACAAGAAATGAAGCAGATTGTTATCACTCTCGAGACATCAGAAATTCAGGAGCTCGAAAAGACCAGGGATAAGGCTTCCATCACCCGGGCATCAAAGGCATGTGTCCTTGATCAGATTACTCGAGGGAAAGCTCAGCTTACTCCATCAAGTGGGGGATCTGAGGCATTTGCATTAATAATTGATGGAAAATCACTTTCTTATGCTCTAGAGGATGGTATGAAGGCATTGTTTCTAGAGCTAGCGATTTGTTGTGCTTCTGTCATTTGCTGCCGTTCATCTCCAAAACAGAAGGCACTGGTAACCAGGTTAGTTAAATCCGGGACTCGGAAAACAACATTGGCAATTGGCGATGGTGCAAATGATGTAGGAATGCTTCAAGAAGCGGATATTGGAGTTGGAATTAGTGGTGCTGAAGGAATGCAGGCAGTTATGTCGAGTGATGTTGCGATCGCACAGTTCAGATATTTGGAGCAGCTGCTACTTGTGCATGGACATTGGTGCTACAGAAGGATATCATCAATGATTTGCTACTTTTTCTATAAGAATATTACGTTTGGTTTTACCATATTCTTATATGAGGCATTCACATCGTTCTCTGGGCAACCTGCATATAATGATTGGTTTTTGTCGCTGTATAATGTTTTCTTCTCATCACTTCCGGTGGTAGCGTTGGGAGTTTTTGACCAGGATGTTTCCGCAAGACACTGTCTTCAGTTTCCTCTCTTATACCAACAAGGAGTGCAGAATGTCCTTTTCAGCTGGTTCCGAATACTCAGTTGGATGTTTAATGGATTGTGCAGTGCTGTGATCATTTTCTTTTTATGCACGAAAGCGCTAGAGCATCAAGCGTTTAACTCTGACGGGAAAACTGTCGGGCGGGATATTCTAGGTGCAACAATGTATTCGTGTGTTGTTTGGATCGTAAATTTGCAAATGGCGCTTTCTGTTAGTTACTTCACCTTGATACAACATCTTTTCATCTGGGGTTCAATTTCGATTTGGTACATTTTTCTCCTGATTTATGGATCCATGCCCTCCACCTTCTCAACCAATGCCTACAAGATCTTCATTGAAGTTCTTGCCCCTGGCCCTTCCTACTGGCTAGTGCTACTATTTGTGGTGCTTTCAACACTCATTCCTTACTTCTCATACTCAGCAATACAAATGAGGTTCTTTCCAATGTATCATCAAATGATTTTGTGGATGAGGAATGAAGGACAATTAGACAACCAAAAGTACCGCAATTTTTTGCAGAAGAGCTCGTTCCGATCAACAAGTGTGGGTTCCACAGCACGGTTTGCAGCCAAAATGAACAACCTGAAAGAAATAAACCACAGCGCTACTTAG 3588 40.91 MSGGRRRKLHFSKIYSFACGKASLKDDHSQIGGPGFCRVVFCNEPECFEAGIRNYADNYVSTTKYTLATFLPKSLFEQFRRVANFYFLISGILAFTPLAPYTAVSAILPLILVISATMTKEGIEDWRRQKQDIEVNNRKVKVHGGDGIFAYTEWKNLRVGDIVKVEKDEFFPADIVLLSSSYEDAICYVETMNLDGETNLKLKQALEVTSHVNEDSIFRSFKAVIKCEDPNANLYSFVGSMEFQEQQYPLSPQQLLLRDSKLRNTDYIYGAVVFTGRETKVIQNSTDPPSKRSNIEKKMDRIIYLLFCVLFLLALVGSIFFGIATEDDLQNGSMKRWYLRPDDAKIFFDPKRAPMAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDIHMYYEEADKPAHARTSNLNEELGQVHTILSDKTGTLTCNSMEFIKCSVAGSAYGRGFTEVERAMSRRKDSPLHKAVNGWNHNEDVTDKNAHIKGFNFKDDRIMNGNWVNEPRADVIQMFFCVLATCHTAIPEINEETGKVSYEAESPDEAAFVIAARELGFEFYKRTQTSISLHEFDPTLGKRVERTYKLLHVLEFNSSRKRMSVILRNEEGKILLFSKGADSVMFEMLAKSGREFEEETKKHVSEYADAGLRTLILAYRELGEEEYREFDDKFTKAKNSVSADRESLIDKVTDKIERNLILLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQEMKQIVITLETSEIQELEKTRDKASITRASKACVLDQITRGKAQLTPSSGGSEAFALIIDGKSLSYALEDGMKALFLELAICCASVICCRSSPKQKALVTRLVKSGTRKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDVAIAQFRYLEQLLLVHGHWCYRRISSMICYFFYKNITFGFTIFLYEAFTSFSGQPAYNDWFLSLYNVFFSSLPVVALGVFDQDVSARHCLQFPLLYQQGVQNVLFSWFRILSWMFNGLCSAVIIFFLCTKALEHQAFNSDGKTVGRDILGATMYSCVVWIVNLQMALSVSYFTLIQHLFIWGSISIWYIFLLIYGSMPSTFSTNAYKIFIEVLAPGPSYWLVLLFVVLSTLIPYFSYSAIQMRFFPMYHQMILWMRNEGQLDNQKYRNFLQKSSFRSTSVGSTARFAAKMNNLKEINHSAT 1195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56880617 56887245 + evm.model.ptg000006l.384 HCH1g0823 538842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0823 1195 Pfam Cation transport ATPase (P-type) 520 622 - -
HCH1g0823 1195 NCBIfam phospholipid-translocating P-type ATPase 55 1146 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
HCH1g0823 1195 SFLD p-type atpase 406 913 IPR044492 -
HCH1g0823 1195 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 29 1153 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
HCH1g0823 1195 FunFam Phospholipid-transporting ATPase 116 286 - -
HCH1g0823 1195 Pfam Phospholipid-translocating P-type ATPase C-terminal 890 1140 IPR032630 -
HCH1g0823 1195 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 489 699 IPR023299 GO:0000166(InterPro)
HCH1g0823 1195 CDD P-type_ATPase_APLT_Dnf-like 57 1022 - -
HCH1g0823 1195 FunFam Phospholipid-transporting ATPase 540 698 - -
HCH1g0823 1195 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 1140 IPR023298 -
HCH1g0823 1195 SFLD C1.7: P-type atpase like 406 913 - -
HCH1g0823 1195 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
HCH1g0823 1195 FunFam Phospholipid-transporting ATPase 698 902 - -
HCH1g0823 1195 Gene3D - 699 902 IPR023214 -
HCH1g0823 1195 SUPERFAMILY HAD-like 419 917 IPR036412 -
HCH1g0823 1195 PRINTS P-type cation-transporting ATPase superfamily signature 862 881 - -
HCH1g0823 1195 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
HCH1g0823 1195 Gene3D - 544 698 IPR023299 GO:0000166(InterPro)
HCH1g0823 1195 Gene3D - 115 286 - -
HCH1g0823 1195 NCBIfam HAD-IC family P-type ATPase 828 944 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH1g0823 1195 Pfam Phospholipid-translocating ATPase N-terminal 40 106 IPR032631 -
HCH1g0823 1195 SUPERFAMILY Calcium ATPase, transduction domain A 143 283 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0823 HCH-Chr1:56880617 HCH4g1491 HCH-Chr4:11291545 0.00E+00 dispersed
HCH13g0821 HCH-Chr13:8064648 HCH1g0823 HCH-Chr1:56880617 0.00E+00 transposed
HCH1g0823 HCH-Chr1:56880617 HCH10g1223 HCH-Chr10:43417310 0.00E+00 wgd
HCH1g0823 HCH-Chr1:56880617 HCH3g0149 HCH-Chr3:953368 0.00E+00 wgd
HCH1g0823 HCH-Chr1:56880617 HCH9g0840 HCH-Chr9:5944635 1.10E-189 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0823 K01530 - csv:101207148 2101.63