Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0825 | ATGGCAGCCACGTCACCCTCGCCGGATTCTTCTACACCACCGGTTTCTCCGGCCACTCCAATTCTGTCACCCTCACCTCCCTTAGCTTCTTCTAGTCCACCGCCTGTTACTCCTACTTCATCTCCACCGCCAGAGTCTCCGTCGCGACCGCCGCCGGTCACCGCTACTCCTCCATCTCGTCAACCATCTGATACTTCACCTCCCCCTTCTACTGGAACTCCACCACCACAAACACCGGCATTGCCGCCTCCACCACCGCCCCGGACTGGTTCTCCGGCATCCCCACCACCAACTTCATCCGATCCTCCAGCCCCATCAACAGCAATTCCACCAGTAAGTTCCCCTCCACCGCCACCACGTCCTCGGAATCCCCCTCCACAATCACCACCGGAAAATTCACCACCACCACCGGAAAAATCATCGCCACCACAGCAACCGACGAACCCACCAGAGAATTCACCACCCCCTACGCGATCACCACCATCACTGCCACCGGATAATTCACCACCTCCACCTTCTAGGCTTACTCCTACTCCCAGTGAACTAGTTCCACCACCTTCAAATTCTCCTCCTCCGTCGTTGGCTCCCCCACCCCTCATTCGACTTGCACCGCCTCCGCCTCCTCATCCATCATCTCTTGTTTCTCCTCCACCACCGTCTAGAACACCGACATCACCATCTGAAAATCGGACCAAAGATGGTTCGGGTCCCAATGTGGTAGTAAATTCGAATCACAATGGAAATGGAGGCATTAGCACTGGAGGTGTGATTGCTATTGGTGTAGTGGCAGGAATTGTAGTTCTTAGCATAGTTGGATTGCTTGTTTGGTTTTTGAGGAAGCCAAGGAGAAAGGCTCAAGGCCATGGAGGTTACATTATGCCATCCTCTCTAGACTCCTCACCAAAGTCAGATTCATCCGTTATGAAGGTCCATTCTGCACTTCATCACCACGATAGACATGGCTCCGGCGGTGATGTCGTATACACTCCAAAAGAGTCTGGTGGATTAGGCAATTCAAGGTCAATGTTTACATATGAAGAACTCTTCAAAGCAACAGATGGATTTTCTGCTCGTAATATTTTGGGTGAAGGTGGATTTGGTTCTGTGTATAAAGGGTATCTACCAGATGGGAGAGAGGTTGCAGTGAAGGAACTCAAGATTGGTGGTAGTCAAGGTGAGCAGGAATTCAAAGCTGAAATCGAGATCATCAGTCGTGTACACCATCGCCATTTGGTTTCACTGGTGGGCTACTGTATTTCTGATCACCAAAGGTTGCTTGTCTATGATTATGTCCCTAACAATTCCCTTCATTACCACCTTCATCATAAAGGAGAAAGTGAGTCGGTGCTGGACTGGGCAATGCGTGTTAGGATTGCAGCTGGTGCGGCCCGTGGAATAGCTTACCTCCATGAAGACTGTCATCCTCGAATCATCCATAGAGATATCAAATCTTCAAATATTCTTTTAGATGAAAATTTTGAAGCTCGGGTTTCAGACTTCGGGCTAGCGAAATTAGCCCTTGATGCACATACTCATATAACCACCCGCGTTGTTGGAACTTTCGGATACGTTGCCCCTGAATATGCATCAAGTGGAAAGTTAACTGAGAAATCAGATGTATATTCTTTTGGAGTTGTGCTTCTTGAGCTAATTACTGGTCGGAAGGCTGTCGATTCATCTCAACCAATGGGCGATGAGAGCCTCGTTGAATGGGCTCGGCCTTTACTAAGCCACACACTCGAGAGTCAGGATTTTGAAAGATTGGTGGATCCAAGACTTGAAAGGAACTATGTCGTGAGAGAGATGTTCATGATGATAGAAATAGCGGCTGCTTGTGTGCGGCATGCGTCTGCCAAAAGACCACAGATGGGACAGGTTGTTCGAACTTTTGAAAGCTTGGCCATTTCAGATTTAAGTAATGGAATGAGAGTTGGGGAAAGTCAAGCATTCGATGCTGCTCAACAATCTTCCGAAATACGATTTTTTCGAATGTTGGCATTCGGCAACCAAGATTACAGTACAGACTTTTATACTCAAGGTAGCTTAAATAGTCGATAG | 2058 | 48.4 | MAATSPSPDSSTPPVSPATPILSPSPPLASSSPPPVTPTSSPPPESPSRPPPVTATPPSRQPSDTSPPPSTGTPPPQTPALPPPPPPRTGSPASPPPTSSDPPAPSTAIPPVSSPPPPPRPRNPPPQSPPENSPPPPEKSSPPQQPTNPPENSPPPTRSPPSLPPDNSPPPPSRLTPTPSELVPPPSNSPPPSLAPPPLIRLAPPPPPHPSSLVSPPPPSRTPTSPSENRTKDGSGPNVVVNSNHNGNGGISTGGVIAIGVVAGIVVLSIVGLLVWFLRKPRRKAQGHGGYIMPSSLDSSPKSDSSVMKVHSALHHHDRHGSGGDVVYTPKESGGLGNSRSMFTYEELFKATDGFSARNILGEGGFGSVYKGYLPDGREVAVKELKIGGSQGEQEFKAEIEIISRVHHRHLVSLVGYCISDHQRLLVYDYVPNNSLHYHLHHKGESESVLDWAMRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDAHTHITTRVVGTFGYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKAVDSSQPMGDESLVEWARPLLSHTLESQDFERLVDPRLERNYVVREMFMMIEIAAACVRHASAKRPQMGQVVRTFESLAISDLSNGMRVGESQAFDAAQQSSEIRFFRMLAFGNQDYSTDFYTQGSLNSR | 685 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 56890772 | 56893795 | - | evm.model.ptg000006l.382 | HCH1g0825 | 538844 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0825 | 685 | FunFam | Proline-rich receptor-like protein kinase PERK8 | 327 | 430 | - | - | |
HCH1g0825 | 685 | CDD | STKc_IRAK | 361 | 633 | - | - | |
HCH1g0825 | 685 | MobiDBLite | consensus disorder prediction | 225 | 246 | - | - | |
HCH1g0825 | 685 | MobiDBLite | consensus disorder prediction | 10 | 224 | - | - | |
HCH1g0825 | 685 | PRINTS | Proline rich extensin signature | 39 | 56 | - | - | |
HCH1g0825 | 685 | PRINTS | Proline rich extensin signature | 58 | 83 | - | - | |
HCH1g0825 | 685 | PRINTS | Proline rich extensin signature | 1 | 18 | - | - | |
HCH1g0825 | 685 | PRINTS | Proline rich extensin signature | 20 | 36 | - | - | |
HCH1g0825 | 685 | SMART | serkin_6 | 355 | 605 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH1g0825 | 685 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 477 | 489 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH1g0825 | 685 | ProSiteProfiles | Protein kinase domain profile. | 355 | 633 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH1g0825 | 685 | Pfam | Protein kinase domain | 358 | 564 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH1g0825 | 685 | FunFam | proline-rich receptor-like protein kinase PERK8 | 431 | 644 | - | - | |
HCH1g0825 | 685 | Gene3D | Transferase(Phosphotransferase) domain 1 | 431 | 641 | - | - | |
HCH1g0825 | 685 | Gene3D | Phosphorylase Kinase; domain 1 | 330 | 430 | - | - | |
HCH1g0825 | 685 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 216 | 655 | IPR047117 | - | |
HCH1g0825 | 685 | ProSitePatterns | Protein kinases ATP-binding region signature. | 361 | 383 | IPR017441 | GO:0005524(InterPro) | |
HCH1g0825 | 685 | MobiDBLite | consensus disorder prediction | 1 | 246 | - | - | |
HCH1g0825 | 685 | SUPERFAMILY | Protein kinase-like (PK-like) | 338 | 630 | IPR011009 | - | |
HCH1g0825 | 685 | MobiDBLite | consensus disorder prediction | 286 | 305 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0945 | HCH-Chr14:36980077 | HCH1g0825 | HCH-Chr1:56890772 | 3.60E-45 | dispersed | |
HCH1g0825 | HCH-Chr1:56890772 | HCH1g1033 | HCH-Chr1:58269519 | 8.20E-129 | dispersed | |
HCH3g1056 | HCH-Chr3:15478487 | HCH1g0825 | HCH-Chr1:56890772 | 2.60E-67 | dispersed | |
HCH7g1539 | HCH-Chr7:47882339 | HCH1g0825 | HCH-Chr1:56890772 | 2.10E-44 | dispersed | |
HCH8g1323 | HCH-Chr8:48198566 | HCH1g0825 | HCH-Chr1:56890772 | 9.00E-63 | dispersed | |
HCH9g0300 | HCH-Chr9:1855074 | HCH1g0825 | HCH-Chr1:56890772 | 2.20E-62 | dispersed | |
HCH9g0595 | HCH-Chr9:4001087 | HCH1g0825 | HCH-Chr1:56890772 | 5.50E-71 | dispersed | |
HCH10g1115 | HCH-Chr10:40080534 | HCH1g0825 | HCH-Chr1:56890772 | 1.30E-61 | transposed | |
HCH2g1302 | HCH-Chr2:55123051 | HCH1g0825 | HCH-Chr1:56890772 | 6.80E-27 | transposed | |
HCH6g0149 | HCH-Chr6:1993995 | HCH1g0825 | HCH-Chr1:56890772 | 2.80E-57 | transposed | |
HCH1g0825 | HCH-Chr1:56890772 | HCH13g0628 | HCH-Chr13:4892828 | 5.00E-158 | wgd | |
HCH1g0825 | HCH-Chr1:56890772 | HCH9g0843 | HCH-Chr9:5967702 | 1.10E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81290 | PF00069 | Pkinase | 1.60E-45 | CL0016 | HCH | PK |
Pathway information
