Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0825 ATGGCAGCCACGTCACCCTCGCCGGATTCTTCTACACCACCGGTTTCTCCGGCCACTCCAATTCTGTCACCCTCACCTCCCTTAGCTTCTTCTAGTCCACCGCCTGTTACTCCTACTTCATCTCCACCGCCAGAGTCTCCGTCGCGACCGCCGCCGGTCACCGCTACTCCTCCATCTCGTCAACCATCTGATACTTCACCTCCCCCTTCTACTGGAACTCCACCACCACAAACACCGGCATTGCCGCCTCCACCACCGCCCCGGACTGGTTCTCCGGCATCCCCACCACCAACTTCATCCGATCCTCCAGCCCCATCAACAGCAATTCCACCAGTAAGTTCCCCTCCACCGCCACCACGTCCTCGGAATCCCCCTCCACAATCACCACCGGAAAATTCACCACCACCACCGGAAAAATCATCGCCACCACAGCAACCGACGAACCCACCAGAGAATTCACCACCCCCTACGCGATCACCACCATCACTGCCACCGGATAATTCACCACCTCCACCTTCTAGGCTTACTCCTACTCCCAGTGAACTAGTTCCACCACCTTCAAATTCTCCTCCTCCGTCGTTGGCTCCCCCACCCCTCATTCGACTTGCACCGCCTCCGCCTCCTCATCCATCATCTCTTGTTTCTCCTCCACCACCGTCTAGAACACCGACATCACCATCTGAAAATCGGACCAAAGATGGTTCGGGTCCCAATGTGGTAGTAAATTCGAATCACAATGGAAATGGAGGCATTAGCACTGGAGGTGTGATTGCTATTGGTGTAGTGGCAGGAATTGTAGTTCTTAGCATAGTTGGATTGCTTGTTTGGTTTTTGAGGAAGCCAAGGAGAAAGGCTCAAGGCCATGGAGGTTACATTATGCCATCCTCTCTAGACTCCTCACCAAAGTCAGATTCATCCGTTATGAAGGTCCATTCTGCACTTCATCACCACGATAGACATGGCTCCGGCGGTGATGTCGTATACACTCCAAAAGAGTCTGGTGGATTAGGCAATTCAAGGTCAATGTTTACATATGAAGAACTCTTCAAAGCAACAGATGGATTTTCTGCTCGTAATATTTTGGGTGAAGGTGGATTTGGTTCTGTGTATAAAGGGTATCTACCAGATGGGAGAGAGGTTGCAGTGAAGGAACTCAAGATTGGTGGTAGTCAAGGTGAGCAGGAATTCAAAGCTGAAATCGAGATCATCAGTCGTGTACACCATCGCCATTTGGTTTCACTGGTGGGCTACTGTATTTCTGATCACCAAAGGTTGCTTGTCTATGATTATGTCCCTAACAATTCCCTTCATTACCACCTTCATCATAAAGGAGAAAGTGAGTCGGTGCTGGACTGGGCAATGCGTGTTAGGATTGCAGCTGGTGCGGCCCGTGGAATAGCTTACCTCCATGAAGACTGTCATCCTCGAATCATCCATAGAGATATCAAATCTTCAAATATTCTTTTAGATGAAAATTTTGAAGCTCGGGTTTCAGACTTCGGGCTAGCGAAATTAGCCCTTGATGCACATACTCATATAACCACCCGCGTTGTTGGAACTTTCGGATACGTTGCCCCTGAATATGCATCAAGTGGAAAGTTAACTGAGAAATCAGATGTATATTCTTTTGGAGTTGTGCTTCTTGAGCTAATTACTGGTCGGAAGGCTGTCGATTCATCTCAACCAATGGGCGATGAGAGCCTCGTTGAATGGGCTCGGCCTTTACTAAGCCACACACTCGAGAGTCAGGATTTTGAAAGATTGGTGGATCCAAGACTTGAAAGGAACTATGTCGTGAGAGAGATGTTCATGATGATAGAAATAGCGGCTGCTTGTGTGCGGCATGCGTCTGCCAAAAGACCACAGATGGGACAGGTTGTTCGAACTTTTGAAAGCTTGGCCATTTCAGATTTAAGTAATGGAATGAGAGTTGGGGAAAGTCAAGCATTCGATGCTGCTCAACAATCTTCCGAAATACGATTTTTTCGAATGTTGGCATTCGGCAACCAAGATTACAGTACAGACTTTTATACTCAAGGTAGCTTAAATAGTCGATAG 2058 48.4 MAATSPSPDSSTPPVSPATPILSPSPPLASSSPPPVTPTSSPPPESPSRPPPVTATPPSRQPSDTSPPPSTGTPPPQTPALPPPPPPRTGSPASPPPTSSDPPAPSTAIPPVSSPPPPPRPRNPPPQSPPENSPPPPEKSSPPQQPTNPPENSPPPTRSPPSLPPDNSPPPPSRLTPTPSELVPPPSNSPPPSLAPPPLIRLAPPPPPHPSSLVSPPPPSRTPTSPSENRTKDGSGPNVVVNSNHNGNGGISTGGVIAIGVVAGIVVLSIVGLLVWFLRKPRRKAQGHGGYIMPSSLDSSPKSDSSVMKVHSALHHHDRHGSGGDVVYTPKESGGLGNSRSMFTYEELFKATDGFSARNILGEGGFGSVYKGYLPDGREVAVKELKIGGSQGEQEFKAEIEIISRVHHRHLVSLVGYCISDHQRLLVYDYVPNNSLHYHLHHKGESESVLDWAMRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDAHTHITTRVVGTFGYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKAVDSSQPMGDESLVEWARPLLSHTLESQDFERLVDPRLERNYVVREMFMMIEIAAACVRHASAKRPQMGQVVRTFESLAISDLSNGMRVGESQAFDAAQQSSEIRFFRMLAFGNQDYSTDFYTQGSLNSR 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56890772 56893795 - evm.model.ptg000006l.382 HCH1g0825 538844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0825 685 FunFam Proline-rich receptor-like protein kinase PERK8 327 430 - -
HCH1g0825 685 CDD STKc_IRAK 361 633 - -
HCH1g0825 685 MobiDBLite consensus disorder prediction 225 246 - -
HCH1g0825 685 MobiDBLite consensus disorder prediction 10 224 - -
HCH1g0825 685 PRINTS Proline rich extensin signature 39 56 - -
HCH1g0825 685 PRINTS Proline rich extensin signature 58 83 - -
HCH1g0825 685 PRINTS Proline rich extensin signature 1 18 - -
HCH1g0825 685 PRINTS Proline rich extensin signature 20 36 - -
HCH1g0825 685 SMART serkin_6 355 605 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0825 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0825 685 ProSiteProfiles Protein kinase domain profile. 355 633 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0825 685 Pfam Protein kinase domain 358 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0825 685 FunFam proline-rich receptor-like protein kinase PERK8 431 644 - -
HCH1g0825 685 Gene3D Transferase(Phosphotransferase) domain 1 431 641 - -
HCH1g0825 685 Gene3D Phosphorylase Kinase; domain 1 330 430 - -
HCH1g0825 685 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 216 655 IPR047117 -
HCH1g0825 685 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524(InterPro)
HCH1g0825 685 MobiDBLite consensus disorder prediction 1 246 - -
HCH1g0825 685 SUPERFAMILY Protein kinase-like (PK-like) 338 630 IPR011009 -
HCH1g0825 685 MobiDBLite consensus disorder prediction 286 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0945 HCH-Chr14:36980077 HCH1g0825 HCH-Chr1:56890772 3.60E-45 dispersed
HCH1g0825 HCH-Chr1:56890772 HCH1g1033 HCH-Chr1:58269519 8.20E-129 dispersed
HCH3g1056 HCH-Chr3:15478487 HCH1g0825 HCH-Chr1:56890772 2.60E-67 dispersed
HCH7g1539 HCH-Chr7:47882339 HCH1g0825 HCH-Chr1:56890772 2.10E-44 dispersed
HCH8g1323 HCH-Chr8:48198566 HCH1g0825 HCH-Chr1:56890772 9.00E-63 dispersed
HCH9g0300 HCH-Chr9:1855074 HCH1g0825 HCH-Chr1:56890772 2.20E-62 dispersed
HCH9g0595 HCH-Chr9:4001087 HCH1g0825 HCH-Chr1:56890772 5.50E-71 dispersed
HCH10g1115 HCH-Chr10:40080534 HCH1g0825 HCH-Chr1:56890772 1.30E-61 transposed
HCH2g1302 HCH-Chr2:55123051 HCH1g0825 HCH-Chr1:56890772 6.80E-27 transposed
HCH6g0149 HCH-Chr6:1993995 HCH1g0825 HCH-Chr1:56890772 2.80E-57 transposed
HCH1g0825 HCH-Chr1:56890772 HCH13g0628 HCH-Chr13:4892828 5.00E-158 wgd
HCH1g0825 HCH-Chr1:56890772 HCH9g0843 HCH-Chr9:5967702 1.10E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81290 PF00069 Pkinase 1.60E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0825 - - - 0.0