Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0837 | ATGGAAATGAGAACAGAACGTGGTATCTTCTGCTGTATGGCTTTGTTTTGCTTATGGAGTTCTTTTGCAAATGCTTTGCTTACTGCTAAGGGTGTCAACTATGAAGTGCAAGCACTGATGGCCATTAAGGCTGCTTTAAAAGATCCTCATTCTGTTCTTAATTGGGATGAAAACGCGGTCGATCCATGTAGCTGGAATATGATCACTTGCTCTCCTGACAAATTTGTCATTAGCTTAGGAGCTCCCAGCCAGAATTTTTCCGGTAGCTTGTCGCCGAGCATCGGAAACTTGACGAATCTCCAGTCAGTGCTGCTACAGGACAATAATATATCAGGATCAGTACCAGCTGAGCTTGGAAATCTACCAAAGCTTGACACTCTTGATCTCTCTAGTAATGACTTCAATGGTGAAATTCCAGTCTCTCTTTCCAATCTGAAAAGCCTTCAATACCTGAGGCTAAACAACAATTCTCTTTCTGGATCAATTCCATCATCTTTGGCTAATATGACTCGGCTCGCTTTGCTGGACCTCTCTTTTAATAATTTGAGTGGCCCATTACCTAGATTGCTGGCTAAAACATACAGTCTTACCGGAAACTCGCTCATCTGCTCGTCCGAGGCCGACCATAAATGCAATGGAACTGCTCCACCTCTCTTATTTGCAGTCAATACTCCTCAAAGTCCACAACCTTCTGGGAGATCTAAAGGACACAAATTAGCCTTGGCTTTCGGCACAAGCCTCGGATGCGTCATCCTGCTAACTCTCGGTTTCGGCTTCTTTATTTGGTGGAGGCAAAGACACAACAAGCAAATTTTCTTTGATGTCAATGACCAAAGATACGAGGAAGTATGCCTTGGGAACCTGAGGAATTTCCAGTTCAGAGAACTCGAAATAGCTACAAACAATTTCAGCAGCAAGAATTTGATAGGAAAAGGCGGATTTGGAAATGTGTATAAAGGTTATATTCAAGATGGTACAATGATAGCTGTGAAAAGGCTGAAAGATGGAAATGCAATTGGAGGAGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCCTGGCAGTGCATAGGAATCTCCTCAAATTATATGGCTTCTGTATGACAAACACTGAGAGGCTTTTGGTTTACCCTTATATGTCCAATGGTAGCGTTGCTTCCCGTCTCAAAGCAAAGCCAGGTCTGGATTGGAGCACAAGGAAAAGAATAGCATTGGGTGCTGCAAGAGGGTTACTGTATTTGCATGAGCAATGTGATCCAAAGATAATTCACAGGGATGTTAAGGCTGCAAACATATTGCTTGATGATTATTGTGAAGCCATAGTGGGTGATTTTGGATTGGCAAAGCTGTTGGATCATAGAGATACACATGTGACTACTGCTGTAAGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTCTCCACAGGACAATCCTCTGAGAAAACCGATGTTTTCGGGTTCGGGATCCTTCTTCTTGAATTGATCACTGGACTTAGAGCTCTTGAATTTGGCAAAGCTGCAAATCAGAAAGGAGCCATGCTTGATTGGGTAAAGAAAATCCACCATGAAAAGAAGCTTGAAATGCTGGTTGACAAGGATTTGAGGAACAATTACGACCGGATCGAGCTTGAAGAAATGGTTCAAGTGGCTCTCTTATGTACACAATATCTTCCAACCAGCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTAGCAGAAAAATGGGAAGCTTCTCAGAGGGCGGATGCAAACAGGTACAGAGTCAACGAATTCTCCTCGTCCGGACGATATTCCGATCTCACCGATGACTCTTCATTGCTTGCACAAGCCATGGAACTTTCAGGACCAAGATGA | 1872 | 43.27 | MEMRTERGIFCCMALFCLWSSFANALLTAKGVNYEVQALMAIKAALKDPHSVLNWDENAVDPCSWNMITCSPDKFVISLGAPSQNFSGSLSPSIGNLTNLQSVLLQDNNISGSVPAELGNLPKLDTLDLSSNDFNGEIPVSLSNLKSLQYLRLNNNSLSGSIPSSLANMTRLALLDLSFNNLSGPLPRLLAKTYSLTGNSLICSSEADHKCNGTAPPLLFAVNTPQSPQPSGRSKGHKLALAFGTSLGCVILLTLGFGFFIWWRQRHNKQIFFDVNDQRYEEVCLGNLRNFQFRELEIATNNFSSKNLIGKGGFGNVYKGYIQDGTMIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLKLYGFCMTNTERLLVYPYMSNGSVASRLKAKPGLDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAIVGDFGLAKLLDHRDTHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQKGAMLDWVKKIHHEKKLEMLVDKDLRNNYDRIELEEMVQVALLCTQYLPTSRPKMSEVVRMLEGDGLAEKWEASQRADANRYRVNEFSSSGRYSDLTDDSSLLAQAMELSGPR | 623 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 56965396 | 56968393 | + | evm.model.ptg000006l.370 | HCH1g0837 | 538856 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0837 | 623 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 11 | 623 | - | - | |
HCH1g0837 | 623 | Pfam | Leucine Rich Repeat | 147 | 169 | IPR001611 | GO:0005515(InterPro) | |
HCH1g0837 | 623 | Pfam | Leucine Rich Repeat | 99 | 121 | IPR001611 | GO:0005515(InterPro) | |
HCH1g0837 | 623 | Pfam | Leucine Rich Repeat | 172 | 191 | IPR001611 | GO:0005515(InterPro) | |
HCH1g0837 | 623 | Pfam | Leucine Rich Repeat | 123 | 145 | IPR001611 | GO:0005515(InterPro) | |
HCH1g0837 | 623 | FunFam | Somatic embryogenesis receptor kinase 1 | 272 | 379 | - | - | |
HCH1g0837 | 623 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 380 | 592 | - | - | |
HCH1g0837 | 623 | Gene3D | Transferase(Phosphotransferase) domain 1 | 380 | 592 | - | - | |
HCH1g0837 | 623 | ProSitePatterns | Protein kinases ATP-binding region signature. | 309 | 331 | IPR017441 | GO:0005524(InterPro) | |
HCH1g0837 | 623 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 422 | 434 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH1g0837 | 623 | Gene3D | Ribonuclease Inhibitor | 32 | 213 | IPR032675 | - | |
HCH1g0837 | 623 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 32 | 213 | - | - | |
HCH1g0837 | 623 | Pfam | Protein tyrosine and serine/threonine kinase | 306 | 572 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH1g0837 | 623 | SMART | serkin_6 | 303 | 558 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH1g0837 | 623 | SUPERFAMILY | L domain-like | 35 | 306 | - | - | |
HCH1g0837 | 623 | ProSiteProfiles | Protein kinase domain profile. | 303 | 558 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH1g0837 | 623 | Gene3D | Phosphorylase Kinase; domain 1 | 272 | 379 | - | - | |
HCH1g0837 | 623 | SUPERFAMILY | Protein kinase-like (PK-like) | 280 | 573 | IPR011009 | - | |
HCH1g0837 | 623 | Pfam | Leucine rich repeat N-terminal domain | 33 | 71 | IPR013210 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0837 | HCH-Chr1:56965396 | HCH4g0034 | HCH-Chr4:212341 | 3.30E-193 | dispersed | |
HCH7g0551 | HCH-Chr7:4381580 | HCH1g0837 | HCH-Chr1:56965396 | 2.20E-36 | dispersed | |
HCH1g0837 | HCH-Chr1:56965396 | HCH10g1211 | HCH-Chr10:43136147 | 7.80E-235 | wgd | |
HCH1g0837 | HCH-Chr1:56965396 | HCH13g0647 | HCH-Chr13:5064122 | 3.00E-226 | wgd | |
HCH1g0837 | HCH-Chr1:56965396 | HCH9g0846 | HCH-Chr9:5984425 | 1.60E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81291 | PF00069 | Pkinase | 1.50E-43 | CL0016 | HCH | PK |
Pathway information
