Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0837 ATGGAAATGAGAACAGAACGTGGTATCTTCTGCTGTATGGCTTTGTTTTGCTTATGGAGTTCTTTTGCAAATGCTTTGCTTACTGCTAAGGGTGTCAACTATGAAGTGCAAGCACTGATGGCCATTAAGGCTGCTTTAAAAGATCCTCATTCTGTTCTTAATTGGGATGAAAACGCGGTCGATCCATGTAGCTGGAATATGATCACTTGCTCTCCTGACAAATTTGTCATTAGCTTAGGAGCTCCCAGCCAGAATTTTTCCGGTAGCTTGTCGCCGAGCATCGGAAACTTGACGAATCTCCAGTCAGTGCTGCTACAGGACAATAATATATCAGGATCAGTACCAGCTGAGCTTGGAAATCTACCAAAGCTTGACACTCTTGATCTCTCTAGTAATGACTTCAATGGTGAAATTCCAGTCTCTCTTTCCAATCTGAAAAGCCTTCAATACCTGAGGCTAAACAACAATTCTCTTTCTGGATCAATTCCATCATCTTTGGCTAATATGACTCGGCTCGCTTTGCTGGACCTCTCTTTTAATAATTTGAGTGGCCCATTACCTAGATTGCTGGCTAAAACATACAGTCTTACCGGAAACTCGCTCATCTGCTCGTCCGAGGCCGACCATAAATGCAATGGAACTGCTCCACCTCTCTTATTTGCAGTCAATACTCCTCAAAGTCCACAACCTTCTGGGAGATCTAAAGGACACAAATTAGCCTTGGCTTTCGGCACAAGCCTCGGATGCGTCATCCTGCTAACTCTCGGTTTCGGCTTCTTTATTTGGTGGAGGCAAAGACACAACAAGCAAATTTTCTTTGATGTCAATGACCAAAGATACGAGGAAGTATGCCTTGGGAACCTGAGGAATTTCCAGTTCAGAGAACTCGAAATAGCTACAAACAATTTCAGCAGCAAGAATTTGATAGGAAAAGGCGGATTTGGAAATGTGTATAAAGGTTATATTCAAGATGGTACAATGATAGCTGTGAAAAGGCTGAAAGATGGAAATGCAATTGGAGGAGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCCTGGCAGTGCATAGGAATCTCCTCAAATTATATGGCTTCTGTATGACAAACACTGAGAGGCTTTTGGTTTACCCTTATATGTCCAATGGTAGCGTTGCTTCCCGTCTCAAAGCAAAGCCAGGTCTGGATTGGAGCACAAGGAAAAGAATAGCATTGGGTGCTGCAAGAGGGTTACTGTATTTGCATGAGCAATGTGATCCAAAGATAATTCACAGGGATGTTAAGGCTGCAAACATATTGCTTGATGATTATTGTGAAGCCATAGTGGGTGATTTTGGATTGGCAAAGCTGTTGGATCATAGAGATACACATGTGACTACTGCTGTAAGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTCTCCACAGGACAATCCTCTGAGAAAACCGATGTTTTCGGGTTCGGGATCCTTCTTCTTGAATTGATCACTGGACTTAGAGCTCTTGAATTTGGCAAAGCTGCAAATCAGAAAGGAGCCATGCTTGATTGGGTAAAGAAAATCCACCATGAAAAGAAGCTTGAAATGCTGGTTGACAAGGATTTGAGGAACAATTACGACCGGATCGAGCTTGAAGAAATGGTTCAAGTGGCTCTCTTATGTACACAATATCTTCCAACCAGCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTAGCAGAAAAATGGGAAGCTTCTCAGAGGGCGGATGCAAACAGGTACAGAGTCAACGAATTCTCCTCGTCCGGACGATATTCCGATCTCACCGATGACTCTTCATTGCTTGCACAAGCCATGGAACTTTCAGGACCAAGATGA 1872 43.27 MEMRTERGIFCCMALFCLWSSFANALLTAKGVNYEVQALMAIKAALKDPHSVLNWDENAVDPCSWNMITCSPDKFVISLGAPSQNFSGSLSPSIGNLTNLQSVLLQDNNISGSVPAELGNLPKLDTLDLSSNDFNGEIPVSLSNLKSLQYLRLNNNSLSGSIPSSLANMTRLALLDLSFNNLSGPLPRLLAKTYSLTGNSLICSSEADHKCNGTAPPLLFAVNTPQSPQPSGRSKGHKLALAFGTSLGCVILLTLGFGFFIWWRQRHNKQIFFDVNDQRYEEVCLGNLRNFQFRELEIATNNFSSKNLIGKGGFGNVYKGYIQDGTMIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLKLYGFCMTNTERLLVYPYMSNGSVASRLKAKPGLDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAIVGDFGLAKLLDHRDTHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQKGAMLDWVKKIHHEKKLEMLVDKDLRNNYDRIELEEMVQVALLCTQYLPTSRPKMSEVVRMLEGDGLAEKWEASQRADANRYRVNEFSSSGRYSDLTDDSSLLAQAMELSGPR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56965396 56968393 + evm.model.ptg000006l.370 HCH1g0837 538856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0837 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 623 - -
HCH1g0837 623 Pfam Leucine Rich Repeat 147 169 IPR001611 GO:0005515(InterPro)
HCH1g0837 623 Pfam Leucine Rich Repeat 99 121 IPR001611 GO:0005515(InterPro)
HCH1g0837 623 Pfam Leucine Rich Repeat 172 191 IPR001611 GO:0005515(InterPro)
HCH1g0837 623 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515(InterPro)
HCH1g0837 623 FunFam Somatic embryogenesis receptor kinase 1 272 379 - -
HCH1g0837 623 FunFam Somatic embryogenesis receptor-like kinase 1 380 592 - -
HCH1g0837 623 Gene3D Transferase(Phosphotransferase) domain 1 380 592 - -
HCH1g0837 623 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524(InterPro)
HCH1g0837 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0837 623 Gene3D Ribonuclease Inhibitor 32 213 IPR032675 -
HCH1g0837 623 FunFam Putative LRR receptor-like serine/threonine-protein kinase 32 213 - -
HCH1g0837 623 Pfam Protein tyrosine and serine/threonine kinase 306 572 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0837 623 SMART serkin_6 303 558 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0837 623 SUPERFAMILY L domain-like 35 306 - -
HCH1g0837 623 ProSiteProfiles Protein kinase domain profile. 303 558 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0837 623 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
HCH1g0837 623 SUPERFAMILY Protein kinase-like (PK-like) 280 573 IPR011009 -
HCH1g0837 623 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0837 HCH-Chr1:56965396 HCH4g0034 HCH-Chr4:212341 3.30E-193 dispersed
HCH7g0551 HCH-Chr7:4381580 HCH1g0837 HCH-Chr1:56965396 2.20E-36 dispersed
HCH1g0837 HCH-Chr1:56965396 HCH10g1211 HCH-Chr10:43136147 7.80E-235 wgd
HCH1g0837 HCH-Chr1:56965396 HCH13g0647 HCH-Chr13:5064122 3.00E-226 wgd
HCH1g0837 HCH-Chr1:56965396 HCH9g0846 HCH-Chr9:5984425 1.60E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81291 PF00069 Pkinase 1.50E-43 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0837 - - - 0.0