Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0841 ATGGCAATTCCAAGGCTCATATTTGGAACGTTTCTCTATGTTGCTTTCTCCCTTCTGTGGCGCTACGGTTCGGTTGCGGCGGCGAACGAGCAGCTATTGACGTTGGATTACTATGCGAAAACTTGTCCAAATTTGTTCCAGATTGTGAGGAAGGAGATGGAATGTGCAGTGCTTTCTGACCCTCGTAATGCAGCCTTTGTGGTCCGCTTGCATTTCCACGACTGTTTTGTCCAGGGATGTGATGGGTCAGTTTTGCTGGACGACACAATAACATTACAAGGAGAGAAAAAGGCTTCAAACAACATAAATTCTCTGAAAGGTTTCAGAATCATCGACAAGATTAAGAACAACCTCGAATCAGAGTGTCCTGGAATTGTTTCTTGTGCTGATTTACTCACTATTGCAGCTAGAGATGCTATTATTCTGGTGGGTGGTCCTTATTGGGAGGTTCCCGTTGGAAGAAAGGATTCCACGACGGCAAGCTATGAACTTGCAAATACAAATCTTCCCACAGCCAATGAGGGGCTTGTGGGCATCATCTCCAAATTCCTTTTTCAAGGCCTCTCCGTCACCGACGTGGTAGCTTTATCAGGAGCGCACACCATTGGAATGGCAAGGTGTGAGAATTTCAGGCCAAGAGTTTATGGGAGTATGAAATCAAGTGGAAACAACCCAATATCTGGTTCATATATTGAAAACTTGAGATCAATGTGCCCCCCAGTTGGAAAATCTGCAGACAACAACATATCAGCAATGGACAATCTGACACCAAATCTCTTTGACAATTCCTATTTTCAAATCTTAATGAAAGAAGAAGGGCTTCTTAATTCAGACCAGGAATTGTTTTCCAGTCTTGTGGGAATTCTTGAAACCAGAGAGCTTGTCGTGAAATATGCTGCAGACACACTTGCTTTTTTCCAACAATTCTCTGATTCCATGGTCAAGCTCGGAAATATCACCAATTCTCAGAGCTTCTTCAATGGAGAAGTCAGGAGAAATTGCAGGTTCATCAATACTTAA 1020 43.14 MAIPRLIFGTFLYVAFSLLWRYGSVAAANEQLLTLDYYAKTCPNLFQIVRKEMECAVLSDPRNAAFVVRLHFHDCFVQGCDGSVLLDDTITLQGEKKASNNINSLKGFRIIDKIKNNLESECPGIVSCADLLTIAARDAIILVGGPYWEVPVGRKDSTTASYELANTNLPTANEGLVGIISKFLFQGLSVTDVVALSGAHTIGMARCENFRPRVYGSMKSSGNNPISGSYIENLRSMCPPVGKSADNNISAMDNLTPNLFDNSYFQILMKEEGLLNSDQELFSSLVGILETRELVVKYAADTLAFFQQFSDSMVKLGNITNSQSFFNGEVRRNCRFINT 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57003576 57005866 - evm.model.ptg000006l.366 HCH1g0841 538860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0841 339 Gene3D - 36 338 - -
HCH1g0841 339 ProSitePatterns Peroxidases proximal heme-ligand signature. 192 202 IPR019793 -
HCH1g0841 339 PANTHER PEROXIDASE 72-RELATED 20 337 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 ProSiteProfiles Plant heme peroxidase family profile. 32 338 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601(InterPro)
HCH1g0841 339 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 PRINTS Haem peroxidase superfamily signature 192 207 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 PRINTS Haem peroxidase superfamily signature 253 268 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 CDD secretory_peroxidase 33 337 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH1g0841 339 SUPERFAMILY Heme-dependent peroxidases 33 338 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 Pfam Peroxidase 49 301 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 FunFam Peroxidase 36 181 - -
HCH1g0841 339 FunFam Peroxidase 170 316 - -
HCH1g0841 339 PRINTS Plant peroxidase signature 311 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 PRINTS Plant peroxidase signature 267 284 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 PRINTS Plant peroxidase signature 251 266 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 PRINTS Plant peroxidase signature 191 203 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH1g0841 339 Gene3D Peroxidase, domain 2 170 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0841 HCH-Chr1:57003576 HCH5g0300 HCH-Chr5:1873911 1.20E-77 dispersed
HCH1g0841 HCH-Chr1:57003576 HCH4g0752 HCH-Chr4:4843382 1.90E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0841 K00430 - csv:101216779 525.013