Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0847 ATGGATATAAGTGAGAGAGATAAATTTAGACCAGAAAATAGCACTGAAGATTCTGTTAACTATTCCCATAGCATGTCTTCAGACTGGAGATTTAGTGAGGCCATTCTTACAAGTATGCCAATGGGAATGGTTTTGCCAGGGAATGTGGATATAGTTAGAAATCAGGATATGGTTTGTTCTTCTTCCACTGCCCCTTTGGTGGATTCATTTAGCCCTGCCATTTGGGAACAAGCAGCTAATTGTCAAAACTTGGGATTTGGCAATGTTGAGGACCATAACACCTGCAATACTTCAAATGCCATACCAATTAACAAGGGCAGTGGCTGTCCAGTGTCTTTGACCAGTGGCATTGACAGAACGCTCGACATCGGTTGGAACCTGTCGCATAGTATGTTTAAAGAGGGAGTGTACTTACCTAACATTCCTGGTGTGCTGCTCCCGAGCTTGTCTCAACTTCCGCCTGATTCTTCATTTATTGAACGTGCAGCGAGGTTCTCTTCCTTTAGTGGTGGAAATTTTAGTGATGTTCTTGACCCTTTCAGCATGCCTGAATCTGTGGCCGTTTTCTCTAGAGGCATGGGAATGGTACCTGGGAGAAGGGATGATTTTCCAAGAAATGGGTTGAATTCGGTATCTGGAAGTGGAGCTGGAGGACAATCTCAAAAGAATGCATTTAATAGTAGTGAAGTTTCTAAAGCTGTTTCTTTGACTAATGAGCATGGAGCAACTGAAAGGAACCCTTCTCAAAATGAGAGCTCTTTAAAATTGGATAATCAAGGTAATAAGCAAGGTGTTGATTTGTCTGTTAAAGAACCTGATGAAGCTGAGTTTAGTGGTGGTGATGGTTCAGGTGAGCCATGTATGGTAGAAGTTACAGGTAGGGAACTTTCTGCTAAGGGCCTGGGCTCAAGGAAAAGGAAAAGAAGTGGTCAGAAGACGGAACTTGAACAAGCCAATGGACCTCTGCAACAAACTAGTGTGTCAGCCAAGGATAACACTGACATTCAGCAGAAGGGAGATCAACCTAGTTCAACTACAATCAAGGGTACAGGAAAACATGGTAAACAGGGCTCTCAGCCTTCAGATCCATCAAAGGAAGAGTATATTCACGTCAGAGCCCGAAGGGGCCAGGCAACAAACAGCCATAGTCTTGCTGAGCGGGTTAGGAGAGAAAAGATCAGTGAGAGGATGAAGTTTCTTCAAGAATTAGTCCCTGGTTGCAGCAAGGTAACTGGCAAGGCAGTGATGCTAGATGAAATCATTAACTATGTTCAATCGCTGCAACGACAAGTTGAGTTTTTGTCAATGAAACTTGCTACAGTTAACCCAAGGTTGGATATTAATATTGAAGAGCTCCTAGCCAAAGATATTCTTCAATCACGAGCTGGTACATCGTCAACATTGGTGTTTTCTCCACATATGCCTGTTACTTGTCCTCCGCCACGTTTTTCTCATCACGGACTTATTCCAACCAGTATTCCTGCTACAGCGAGTTCTGAGATACTAAGAAGCACAATTAATTCTCAGTTGACTCCAAGGTCTGGTGGATTTAAGGAACCTACTCAGATAAAGAATTTGTGGGACGGCGAGCTCCACAACATTGTGCAGATGAGCTTTGGGACGTCTGCTCCCACGAATTGTTTAGAAGTTGATGGTTCAGATTCGCCCAGCAATACGAAAGTCGAAAGTTCTACTTGA 1698 43.35 MDISERDKFRPENSTEDSVNYSHSMSSDWRFSEAILTSMPMGMVLPGNVDIVRNQDMVCSSSTAPLVDSFSPAIWEQAANCQNLGFGNVEDHNTCNTSNAIPINKGSGCPVSLTSGIDRTLDIGWNLSHSMFKEGVYLPNIPGVLLPSLSQLPPDSSFIERAARFSSFSGGNFSDVLDPFSMPESVAVFSRGMGMVPGRRDDFPRNGLNSVSGSGAGGQSQKNAFNSSEVSKAVSLTNEHGATERNPSQNESSLKLDNQGNKQGVDLSVKEPDEAEFSGGDGSGEPCMVEVTGRELSAKGLGSRKRKRSGQKTELEQANGPLQQTSVSAKDNTDIQQKGDQPSSTTIKGTGKHGKQGSQPSDPSKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDINIEELLAKDILQSRAGTSSTLVFSPHMPVTCPPPRFSHHGLIPTSIPATASSEILRSTINSQLTPRSGGFKEPTQIKNLWDGELHNIVQMSFGTSAPTNCLEVDGSDSPSNTKVESST 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57085334 57087952 + evm.model.ptg000006l.360 HCH1g0847 538866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0847 565 Gene3D - 374 449 IPR036638 GO:0046983(InterPro)
HCH1g0847 565 MobiDBLite consensus disorder prediction 314 363 - -
HCH1g0847 565 Pfam Helix-loop-helix DNA-binding domain 380 428 IPR011598 GO:0046983(InterPro)
HCH1g0847 565 FunFam Basic helix-loop-helix transcription factor 374 446 - -
HCH1g0847 565 SMART finulus 383 433 IPR011598 GO:0046983(InterPro)
HCH1g0847 565 MobiDBLite consensus disorder prediction 207 265 - -
HCH1g0847 565 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 375 445 IPR036638 GO:0046983(InterPro)
HCH1g0847 565 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 377 427 IPR011598 GO:0046983(InterPro)
HCH1g0847 565 MobiDBLite consensus disorder prediction 299 313 - -
HCH1g0847 565 MobiDBLite consensus disorder prediction 294 364 - -
HCH1g0847 565 CDD bHLH_AtBPE_like 367 452 - -
HCH1g0847 565 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 150 485 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
HCH1g0847 565 MobiDBLite consensus disorder prediction 1 22 - -
HCH1g0847 565 MobiDBLite consensus disorder prediction 196 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0533 HCH-Chr12:3131179 HCH1g0847 HCH-Chr1:57085334 7.30E-43 dispersed
HCH1g0847 HCH-Chr1:57085334 HCH7g0547 HCH-Chr7:4253811 5.90E-40 dispersed
HCH7g0939 HCH-Chr7:37872082 HCH1g0847 HCH-Chr1:57085334 4.10E-46 transposed
HCH1g0847 HCH-Chr1:57085334 HCH10g1202 HCH-Chr10:42953550 1.90E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33090 PF00010 HLH 6.30E-06 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0847 - - - 0.0