Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH1g0866 | ATGAATTTGGAGGAGAAAACTTCCATGGAATTGGTTCAGCCTTCTGAGCATTTCTGCTACGTGAGATGCAACTTCTGCAACACCGTTCTTGCGGTTGGAATTCCATGCAGACGTTTGCTGGATACAGTGACAGTGAAATGTGGTCATTGCAGCAACCTCTCCTTTCTCAGCACAAGACCACCTCTGCAAGGCCAATGCATTGATCACCCTTTGAATTTTCAGTCTGATCTGCGGGGTGGTTTCTCGAGTGATTTCCGAAAGGGTGTATCGACATCGATATCATCTTCAATGACGGACGAGTCACCCACTGCAAATTTTGTTGTGAAACCTCCTGAGAAGAAACACAGACTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGCATCAAAGCTGCTAACCCTGAGATACCCCATCGAGAAGCATTTAGTGCAGCAGCAAAGAACTGGGCTAGATACATTCCAAATTCATCAGCTGGATCGGTTTCTGGGATCCACAACAATGTAAGAAAACGATTCCCGTCGTTATATGTAGAACATGTGAACTATTAA | 558 | 44.62 | MNLEEKTSMELVQPSEHFCYVRCNFCNTVLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLNFQSDLRGGFSSDFRKGVSTSISSSMTDESPTANFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSSAGSVSGIHNNVRKRFPSLYVEHVNY | 185 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 57206451 | 57207738 | - | evm.model.ptg000006l.341 | HCH1g0866 | 538885 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH1g0866 | 185 | CDD | HMG-box_SF | 116 | 152 | - | - | |
| HCH1g0866 | 185 | Gene3D | High mobility group box domain | 98 | 160 | IPR036910 | - | |
| HCH1g0866 | 185 | FunFam | protein CRABS CLAW isoform X3 | 107 | 166 | - | - | |
| HCH1g0866 | 185 | Pfam | YABBY protein | 14 | 155 | IPR006780 | GO:0007275(InterPro) | |
| HCH1g0866 | 185 | SUPERFAMILY | HMG-box | 102 | 153 | IPR036910 | - | |
| HCH1g0866 | 185 | PANTHER | PROTEIN YABBY 6-RELATED | 14 | 166 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH1g0866 | HCH-Chr1:57206451 | HCH5g0398 | HCH-Chr5:2620127 | 4.30E-32 | dispersed | |
| HCH1g0866 | HCH-Chr1:57206451 | HCH10g0406 | HCH-Chr10:3243254 | 3.30E-32 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33091 | PF04690 | YABBY | 3.20E-51 | CL0114 | HCH | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH1g0866 | K25796 | - | csv:101219863 | 278.87 |