Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0866 ATGAATTTGGAGGAGAAAACTTCCATGGAATTGGTTCAGCCTTCTGAGCATTTCTGCTACGTGAGATGCAACTTCTGCAACACCGTTCTTGCGGTTGGAATTCCATGCAGACGTTTGCTGGATACAGTGACAGTGAAATGTGGTCATTGCAGCAACCTCTCCTTTCTCAGCACAAGACCACCTCTGCAAGGCCAATGCATTGATCACCCTTTGAATTTTCAGTCTGATCTGCGGGGTGGTTTCTCGAGTGATTTCCGAAAGGGTGTATCGACATCGATATCATCTTCAATGACGGACGAGTCACCCACTGCAAATTTTGTTGTGAAACCTCCTGAGAAGAAACACAGACTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGCATCAAAGCTGCTAACCCTGAGATACCCCATCGAGAAGCATTTAGTGCAGCAGCAAAGAACTGGGCTAGATACATTCCAAATTCATCAGCTGGATCGGTTTCTGGGATCCACAACAATGTAAGAAAACGATTCCCGTCGTTATATGTAGAACATGTGAACTATTAA 558 44.62 MNLEEKTSMELVQPSEHFCYVRCNFCNTVLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLNFQSDLRGGFSSDFRKGVSTSISSSMTDESPTANFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSSAGSVSGIHNNVRKRFPSLYVEHVNY 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57206451 57207738 - evm.model.ptg000006l.341 HCH1g0866 538885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0866 185 CDD HMG-box_SF 116 152 - -
HCH1g0866 185 Gene3D High mobility group box domain 98 160 IPR036910 -
HCH1g0866 185 FunFam protein CRABS CLAW isoform X3 107 166 - -
HCH1g0866 185 Pfam YABBY protein 14 155 IPR006780 GO:0007275(InterPro)
HCH1g0866 185 SUPERFAMILY HMG-box 102 153 IPR036910 -
HCH1g0866 185 PANTHER PROTEIN YABBY 6-RELATED 14 166 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0866 K25796 - - csv:101219863 278.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0866 HCH-Chr1:57206451 HCH5g0398 HCH-Chr5:2620127 4.30E-32 dispersed
HCH1g0866 HCH-Chr1:57206451 HCH10g0406 HCH-Chr10:3243254 3.30E-32 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0866 . 1 171 C2C2-YABBY Transcription Factor Family AT1G69180 57.1 5.5e-48 187.6
HCH5g0398 . 73 230 C2C2-YABBY Transcription Factor Family AT2G45190 62.0 9.5e-47 183.3
HCH2g1305 . 1 169 C2C2-YABBY Transcription Factor Family AT1G08465 65.7 1.7e-52 202.6
HCH10g0406 . 5 182 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 1.2e-42 169.9
HCH5g0398 . 30 220 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 2.1e-42 169.1
HCH6g0989 . 18 198 C2C2-YABBY Transcription Factor Family AT1G08465 52.4 1.3e-41 166.4
HCH8g0848 . 5 172 C2C2-YABBY Transcription Factor Family AT1G08465 53.2 1.3e-41 166.4
HCH5g0398 . 40 229 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 7.3e-52 200.7
HCH6g0989 . 28 219 C2C2-YABBY Transcription Factor Family AT4G00180 51.2 1.8e-42 169.5
HCH1g1044 . 1 170 C2C2-YABBY Transcription Factor Family AT1G23420 56.0 6.8e-39 157.9
HCH4g0030 . 2 181 C2C2-YABBY Transcription Factor Family AT1G23420 51.1 2.8e-37 152.5
HCH10g0406 . 8 173 C2C2-YABBY Transcription Factor Family AT2G26580 70.5 1.1e-60 229.6
HCH8g0848 . 7 172 C2C2-YABBY Transcription Factor Family AT2G26580 72.9 4.8e-59 224.2
HCH2g1305 . 1 170 C2C2-YABBY Transcription Factor Family AT2G26580 58.5 1.7e-48 189.1
HCH5g0398 . 30 194 C2C2-YABBY Transcription Factor Family AT2G26580 55.1 1.5e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33091 PF04690 YABBY 3.20E-51 CL0114 HCH TF