Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0869 ATGGATCGTTCTCCCCTCTCTTACCGGAATATCAAAACCAAAACCCCTACCAAATCCGACATCTACTCCACAGTCATCATCCATTCTAATTCCGATTCCGATTCCGATTCCGACCATAATCCCGACGAACGGCGTCGAGAACGGGCAACCAAAGACCAAGACCTTTACGCTACTATGGTTTATAAAGACGTTGATAAAAGGCACGTGGACGATCAGGAAAATGATGATGATGATGATTCGTCTTTACCTCCGCTTCTTAAACGTCTTCCTAAGGATTTTGGTGGCGGTGCCCTAATTGATTATGAGGATGATGACGATGGTTTTGATGATGATGCTGGTGATTTTGGTACTATGATTGTTAAGACGGAGAGAAATCGGGTTCGGAATCGGTCTTCGGATTCGGTTTCGAAGAAGCCTCGAGGTTCTCCATCACCGTTTTTAAATTTTAAGACGGAGAGCCCTGGGAAGAGAGGGAATGGTAGTGAAGAAGAGGATGAGGATGAAGAAGGGGATGGAGATGGATATTCGACGTTTGTGGTGAGGTCGAGGAATAGAGAATCTGAGAGTGGGACTGTTGTTCGAAGAACCGATAATAGTCGTAGCTTGATAAGAGATGGAAGTGGAAGATTTGAGGGGTCTACGATGGATAGGGCGGTGGCGAGTATGCAGGGGATGGGAGAGTTGGGGTTTGGTGGGAGGCAGAGGAAAGGGAATGGATCGCCGTTGAGTGAGGAAGGTGGTGGTCGGCGGAATAAGGTGTCTTCGAGTTCGATTCCAGAGAGTATTACTAGGGAAGATCCTAATTCTAAGTATGAATTGCTCAATGAACTTGGTAAAGGATCTTATGGGGCTGTTTATAAAGCTCGGGATATTAAAACCTCGGAGTTGGTAGCTATCAAGGTCATATCTTTGAGTGAAGGGGAGGAAGGATACGAAGAAATTCGTGGTGAGATTGAGATGTTGCAGCAATGCAGTCATCCGAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAGGAGTATCTTTGGATAGTAATGGAGTACTGTGGGGGTGGAAGTGTTGCTGACTTGATGAATGTCACTGAGGAATCTTTAGAGGAATATCAAATAGCATATATCTGTAGGGAGGCTTTGAAGGGCCTTACTTATCTGCACTCAATATTCAAGGTTCATAGGGATATCAAGGGTGGTAATATTTTGTTAACTGAACAAGGAGATGTCAAGTTGGGAGATTTTGGAGTAGCTGCCCAGCTAACTAGGACCATGTCGAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAAGAAAGTCGATATGATGGAAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGACTTCCTCCAAGATCGGCAGTGCACCCCATGAGGGTTTTATTCATGATATCCATAGAACCAGCTCCAATGCTTGAAGACAAAGAGAAATGGTCTTTGTTGTTCCACGATTTCGTTGCGAAGTGTCTAACAAAAGATCCACGTTCGCGTCCTGCGGCTCCTGAGATGTTGAAGCACAAATTTATTGAAAAATGCAGATGTGGGGCATCAGCAATGTTGCCTAAGATTGAAAAAGCTAGGAAAGTCAGGACTTTAATGGCTCAGCAAGCACATAATATTGCTCCAGCTGCATCAGAAGATGGTACATTGGTAGCGGCAACGGTAAATCAAGATTATGGAGATACTGTTCCTTCAAAACCTCCGAATATTGGACTTCAGGTGGCAAATGAAGTGCCAAGAGGTACCATTTTGAGGAAGCAGGAGGTATCAGGAGTTGAACATGTGGCAGAAGGTACTTTTGGCACTGTAATCATCCATGATGGAGACGAGAATGATAAGGTGGCTTCTCAGTTGGATATTGATAATGCTGAACCTTCAACTGCTTCTATACACGACGAGAGTGCTTCCATTAGTGGAAGTGGAGTTCATATTGTTGATCCCAGTGTGAATCGAACTGGAGGTATTTCGGATGGAAAATTGGATCCTACCACCAGTCTTGTATCTTCACCCTCAATTTTTGGTATCCATGAGCAGAACCTGCTGCAGGTTGGCAGTGAAAGTACTAAAAATAGCACGTTTAAGAATGAAACTGTCAGTCGGAAGGCTTTTGCCCTGCAGGACAAGCTTTGGTCCATATATGCAGCGGGTAATACTGTACCCATTCCATTCTTGAGAGCTACTGATATATCCCCCATTGCTCTGTTGTCCGACAATGTCCTTGGCAGCATACAACAAGATAATAGTGGACCAGTTGCAGTGGAAGTGCTTCAGGAACTTTTCACTGGTGACGGACAATCGAAAAAGGGTCGTAGGGGACAGAATGAGATGCCCCTTCCTCCCAGTGTATATCAAAGACTAACTTCAAGTCCGACGCTATTGAACCTTGCGCAGGCTTTAGCTTACCACAGAATGTGTTACGAAGATATGCCGCTTCAGGAGTTGCAGGCGACGCAAGAACAACAAACCATTCAAAATCTTTGTGATACACTTAGAACTATCCTCCGATTGTAG 2559 44.82 MDRSPLSYRNIKTKTPTKSDIYSTVIIHSNSDSDSDSDHNPDERRRERATKDQDLYATMVYKDVDKRHVDDQENDDDDDSSLPPLLKRLPKDFGGGALIDYEDDDDGFDDDAGDFGTMIVKTERNRVRNRSSDSVSKKPRGSPSPFLNFKTESPGKRGNGSEEEDEDEEGDGDGYSTFVVRSRNRESESGTVVRRTDNSRSLIRDGSGRFEGSTMDRAVASMQGMGELGFGGRQRKGNGSPLSEEGGGRRNKVSSSSIPESITREDPNSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLSEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEESLEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAAPEMLKHKFIEKCRCGASAMLPKIEKARKVRTLMAQQAHNIAPAASEDGTLVAATVNQDYGDTVPSKPPNIGLQVANEVPRGTILRKQEVSGVEHVAEGTFGTVIIHDGDENDKVASQLDIDNAEPSTASIHDESASISGSGVHIVDPSVNRTGGISDGKLDPTTSLVSSPSIFGIHEQNLLQVGSESTKNSTFKNETVSRKAFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGSIQQDNSGPVAVEVLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57240163 57247920 - evm.model.ptg000006l.338 HCH1g0869 538888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0869 852 Gene3D Transferase(Phosphotransferase) domain 1 267 562 - -
HCH1g0869 852 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 250 566 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
HCH1g0869 852 SUPERFAMILY Protein kinase-like (PK-like) 268 526 IPR011009 -
HCH1g0869 852 FunFam Aurora kinase A 263 352 - -
HCH1g0869 852 ProSiteProfiles Protein kinase domain profile. 271 525 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0869 852 MobiDBLite consensus disorder prediction 121 135 - -
HCH1g0869 852 MobiDBLite consensus disorder prediction 32 73 - -
HCH1g0869 852 SMART serkin_6 271 525 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0869 852 Pfam Protein kinase domain 271 525 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0869 852 FunFam serine/threonine-protein kinase dst1 isoform X1 268 558 - -
HCH1g0869 852 MobiDBLite consensus disorder prediction 187 204 - -
HCH1g0869 852 MobiDBLite consensus disorder prediction 19 213 - -
HCH1g0869 852 CDD STKc_MAP4K3_like 270 525 - -
HCH1g0869 852 MobiDBLite consensus disorder prediction 227 267 - -
HCH1g0869 852 MobiDBLite consensus disorder prediction 249 264 - -
HCH1g0869 852 ProSitePatterns Protein kinases ATP-binding region signature. 277 300 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0766 HCH-Chr10:7342660 HCH1g0869 HCH-Chr1:57240163 3.40E-20 dispersed
HCH10g0768 HCH-Chr10:7410693 HCH1g0869 HCH-Chr1:57240163 9.20E-160 dispersed
HCH12g1055 HCH-Chr12:7866225 HCH1g0869 HCH-Chr1:57240163 2.60E-69 dispersed
HCH1g0869 HCH-Chr1:57240163 HCH2g1479 HCH-Chr2:56255265 1.10E-276 dispersed
HCH2g1478 HCH-Chr2:56253710 HCH1g0869 HCH-Chr1:57240163 2.10E-16 dispersed
HCH1g0869 HCH-Chr1:57240163 HCH10g0767 HCH-Chr10:7343252 3.60E-166 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81292 PF00069 Pkinase 1.70E-68 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0869 - - - 0.0