Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0869 ATGGATCGTTCTCCCCTCTCTTACCGGAATATCAAAACCAAAACCCCTACCAAATCCGACATCTACTCCACAGTCATCATCCATTCTAATTCCGATTCCGATTCCGATTCCGACCATAATCCCGACGAACGGCGTCGAGAACGGGCAACCAAAGACCAAGACCTTTACGCTACTATGGTTTATAAAGACGTTGATAAAAGGCACGTGGACGATCAGGAAAATGATGATGATGATGATTCGTCTTTACCTCCGCTTCTTAAACGTCTTCCTAAGGATTTTGGTGGCGGTGCCCTAATTGATTATGAGGATGATGACGATGGTTTTGATGATGATGCTGGTGATTTTGGTACTATGATTGTTAAGACGGAGAGAAATCGGGTTCGGAATCGGTCTTCGGATTCGGTTTCGAAGAAGCCTCGAGGTTCTCCATCACCGTTTTTAAATTTTAAGACGGAGAGCCCTGGGAAGAGAGGGAATGGTAGTGAAGAAGAGGATGAGGATGAAGAAGGGGATGGAGATGGATATTCGACGTTTGTGGTGAGGTCGAGGAATAGAGAATCTGAGAGTGGGACTGTTGTTCGAAGAACCGATAATAGTCGTAGCTTGATAAGAGATGGAAGTGGAAGATTTGAGGGGTCTACGATGGATAGGGCGGTGGCGAGTATGCAGGGGATGGGAGAGTTGGGGTTTGGTGGGAGGCAGAGGAAAGGGAATGGATCGCCGTTGAGTGAGGAAGGTGGTGGTCGGCGGAATAAGGTGTCTTCGAGTTCGATTCCAGAGAGTATTACTAGGGAAGATCCTAATTCTAAGTATGAATTGCTCAATGAACTTGGTAAAGGATCTTATGGGGCTGTTTATAAAGCTCGGGATATTAAAACCTCGGAGTTGGTAGCTATCAAGGTCATATCTTTGAGTGAAGGGGAGGAAGGATACGAAGAAATTCGTGGTGAGATTGAGATGTTGCAGCAATGCAGTCATCCGAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAGGAGTATCTTTGGATAGTAATGGAGTACTGTGGGGGTGGAAGTGTTGCTGACTTGATGAATGTCACTGAGGAATCTTTAGAGGAATATCAAATAGCATATATCTGTAGGGAGGCTTTGAAGGGCCTTACTTATCTGCACTCAATATTCAAGGTTCATAGGGATATCAAGGGTGGTAATATTTTGTTAACTGAACAAGGAGATGTCAAGTTGGGAGATTTTGGAGTAGCTGCCCAGCTAACTAGGACCATGTCGAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAAGAAAGTCGATATGATGGAAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGACTTCCTCCAAGATCGGCAGTGCACCCCATGAGGGTTTTATTCATGATATCCATAGAACCAGCTCCAATGCTTGAAGACAAAGAGAAATGGTCTTTGTTGTTCCACGATTTCGTTGCGAAGTGTCTAACAAAAGATCCACGTTCGCGTCCTGCGGCTCCTGAGATGTTGAAGCACAAATTTATTGAAAAATGCAGATGTGGGGCATCAGCAATGTTGCCTAAGATTGAAAAAGCTAGGAAAGTCAGGACTTTAATGGCTCAGCAAGCACATAATATTGCTCCAGCTGCATCAGAAGATGGTACATTGGTAGCGGCAACGGTAAATCAAGATTATGGAGATACTGTTCCTTCAAAACCTCCGAATATTGGACTTCAGGTGGCAAATGAAGTGCCAAGAGGTACCATTTTGAGGAAGCAGGAGGTATCAGGAGTTGAACATGTGGCAGAAGGTACTTTTGGCACTGTAATCATCCATGATGGAGACGAGAATGATAAGGTGGCTTCTCAGTTGGATATTGATAATGCTGAACCTTCAACTGCTTCTATACACGACGAGAGTGCTTCCATTAGTGGAAGTGGAGTTCATATTGTTGATCCCAGTGTGAATCGAACTGGAGGTATTTCGGATGGAAAATTGGATCCTACCACCAGTCTTGTATCTTCACCCTCAATTTTTGGTATCCATGAGCAGAACCTGCTGCAGGTTGGCAGTGAAAGTACTAAAAATAGCACGTTTAAGAATGAAACTGTCAGTCGGAAGGCTTTTGCCCTGCAGGACAAGCTTTGGTCCATATATGCAGCGGGTAATACTGTACCCATTCCATTCTTGAGAGCTACTGATATATCCCCCATTGCTCTGTTGTCCGACAATGTCCTTGGCAGCATACAACAAGATAATAGTGGACCAGTTGCAGTGGAAGTGCTTCAGGAACTTTTCACTGGTGACGGACAATCGAAAAAGGGTCGTAGGGGACAGAATGAGATGCCCCTTCCTCCCAGTGTATATCAAAGACTAACTTCAAGTCCGACGCTATTGAACCTTGCGCAGGCTTTAGCTTACCACAGAATGTGTTACGAAGATATGCCGCTTCAGGAGTTGCAGGCGACGCAAGAACAACAAACCATTCAAAATCTTTGTGATACACTTAGAACTATCCTCCGATTGTAG 2559 44.82 MDRSPLSYRNIKTKTPTKSDIYSTVIIHSNSDSDSDSDHNPDERRRERATKDQDLYATMVYKDVDKRHVDDQENDDDDDSSLPPLLKRLPKDFGGGALIDYEDDDDGFDDDAGDFGTMIVKTERNRVRNRSSDSVSKKPRGSPSPFLNFKTESPGKRGNGSEEEDEDEEGDGDGYSTFVVRSRNRESESGTVVRRTDNSRSLIRDGSGRFEGSTMDRAVASMQGMGELGFGGRQRKGNGSPLSEEGGGRRNKVSSSSIPESITREDPNSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLSEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEESLEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAAPEMLKHKFIEKCRCGASAMLPKIEKARKVRTLMAQQAHNIAPAASEDGTLVAATVNQDYGDTVPSKPPNIGLQVANEVPRGTILRKQEVSGVEHVAEGTFGTVIIHDGDENDKVASQLDIDNAEPSTASIHDESASISGSGVHIVDPSVNRTGGISDGKLDPTTSLVSSPSIFGIHEQNLLQVGSESTKNSTFKNETVSRKAFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGSIQQDNSGPVAVEVLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57240163 57247920 - evm.model.ptg000006l.338 HCH1g0869 538888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0869 852 Gene3D Transferase(Phosphotransferase) domain 1 267 562 - -
HCH1g0869 852 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 250 566 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
HCH1g0869 852 SUPERFAMILY Protein kinase-like (PK-like) 268 526 IPR011009 -
HCH1g0869 852 FunFam Aurora kinase A 263 352 - -
HCH1g0869 852 ProSiteProfiles Protein kinase domain profile. 271 525 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0869 852 MobiDBLite consensus disorder prediction 121 135 - -
HCH1g0869 852 MobiDBLite consensus disorder prediction 32 73 - -
HCH1g0869 852 SMART serkin_6 271 525 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0869 852 Pfam Protein kinase domain 271 525 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0869 852 FunFam serine/threonine-protein kinase dst1 isoform X1 268 558 - -
HCH1g0869 852 MobiDBLite consensus disorder prediction 187 204 - -
HCH1g0869 852 MobiDBLite consensus disorder prediction 19 213 - -
HCH1g0869 852 CDD STKc_MAP4K3_like 270 525 - -
HCH1g0869 852 MobiDBLite consensus disorder prediction 227 267 - -
HCH1g0869 852 MobiDBLite consensus disorder prediction 249 264 - -
HCH1g0869 852 ProSitePatterns Protein kinases ATP-binding region signature. 277 300 IPR017441 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0869 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0766 HCH-Chr10:7342660 HCH1g0869 HCH-Chr1:57240163 3.40E-20 dispersed
HCH10g0768 HCH-Chr10:7410693 HCH1g0869 HCH-Chr1:57240163 9.20E-160 dispersed
HCH12g1055 HCH-Chr12:7866225 HCH1g0869 HCH-Chr1:57240163 2.60E-69 dispersed
HCH1g0869 HCH-Chr1:57240163 HCH2g1479 HCH-Chr2:56255265 1.10E-276 dispersed
HCH2g1478 HCH-Chr2:56253710 HCH1g0869 HCH-Chr1:57240163 2.10E-16 dispersed
HCH1g0869 HCH-Chr1:57240163 HCH10g0767 HCH-Chr10:7343252 3.60E-166 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH12g1055 . 1 692 MAP Kinase Kinase Kinase Kinase AT1G53165 62.5 1.4e-224 776.2
HCH1g0869 . 264 529 MAP Kinase Kinase Kinase Kinase AT1G53165 51.3 1.1e-67 255.0
HCH2g1479 . 50 315 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 3.4e-66 250.0
HCH10g0768 . 39 185 MAP Kinase Kinase Kinase Kinase AT1G53165 56.1 1.6e-39 161.4
HCH12g1055 . 1 691 MAP Kinase Kinase Kinase Kinase AT3G15220 65.0 3.3e-234 808.1
HCH1g0869 . 264 529 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 3.7e-68 256.5
HCH2g1479 . 50 315 MAP Kinase Kinase Kinase Kinase AT3G15220 50.6 1.2e-66 251.5
HCH10g0768 . 39 185 MAP Kinase Kinase Kinase Kinase AT3G15220 56.1 7.2e-40 162.5
HCH1g0869 . 4 852 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 2.6e-230 795.4
HCH2g1479 . 1 512 MAP Kinase Kinase Kinase Kinase AT1G69220 59.2 7.9e-155 544.7
HCH12g1055 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 5.1e-69 259.6
HCH2g1476 . 28 161 MAP Kinase Kinase Kinase Kinase AT1G69220 76.6 1.0e-53 208.8
HCH13g0822 . 1 669 MAP Kinase Kinase Kinase Kinase AT5G14720 64.6 1.9e-250 862.1
HCH9g0143 . 27 628 MAP Kinase Kinase Kinase Kinase AT5G14720 54.4 7.5e-183 637.5
HCH6g1181 . 8 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.6 5.8e-250 860.5
HCH6g1181 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 65.6 4.7e-249 857.4
HCH9g0143 . 22 371 MAP Kinase Kinase Kinase Kinase AT1G70430 65.4 4.5e-131 465.3
HCH6g0302 . 13 371 MAP Kinase Kinase Kinase Kinase AT1G70430 60.7 1.8e-127 453.4
HCH6g1181 . 5 386 MAP Kinase Kinase Kinase Kinase AT1G70430 55.8 3.6e-120 429.1
HCH6g0302 . 11 680 MAP Kinase Kinase Kinase Kinase AT1G79640 57.0 2.3e-205 712.2
HCH9g0143 . 26 373 MAP Kinase Kinase Kinase Kinase AT1G79640 67.5 4.4e-143 505.4
HCH13g0822 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.3 4.6e-102 368.6
HCH9g0143 . 23 347 MAP Kinase Kinase Kinase Kinase AT1G23700 54.6 9.7e-92 334.3
HCH6g0302 . 15 333 MAP Kinase Kinase Kinase Kinase AT1G23700 52.8 3.6e-86 315.8
HCH6g1181 . 17 311 MAP Kinase Kinase Kinase Kinase AT1G23700 50.7 2.2e-75 280.0
HCH7g1302 . 15 453 MAP Kinase Kinase Kinase Kinase AT4G14480 57.4 5.1e-141 498.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81292 PF00069 Pkinase 1.70E-68 CL0016 HCH PK