Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0878 ATGGCTTCTATCACTGCCGTACTGCAGTCTTCAACTCTCACTCATCGTCTGCCTCCCTTTAATCATGCCGTCGTTAAATCTCGATTGCTGCCTCCCATTCCTTCAATCTTATTCATGCACAACCGGAATGTTTTGCCGTCGTCGGTTCCACTTTCCGGCAAGAATTTCAGTTTCTTAACCTCTAAACAACCGCTAAAGTGGACTGGTTCCGTTCATCACCCGCCGGTGCTGGTGGGGGCCACCGCTGCTGATGCTGACGGAATACCAGATGGGTTGATACCTTCCAAGAGCTTTTCTGCAAGGTTTCCAGCACTTGTCACTGGTTTCTTCTTCTTTATGTGGTACTTTTTGAATGTTATTTTCAATATACTCAACAAAAAAGTCTACAATTACTTTCCATATCCATACTTTGTCTCTGTCATACATCTTCTTGTTGGAGTGGGATATTGCCTCATTTCTTGGGCTATTGGTCTGCCGAAACGTGCACCAATAGACAAAGAGCTCTTGCTGTTACTCACTCCGGTTGCGATGTGTCACGCGCTTGGGCATGTGATGTCGAATGTATCATTCGCAGCCGTTGCTGTGTCTTTCACTCACACCATCAAAGCTCTGGAGCCATTCTTCAATGCTGCTGCTTCCCAGTTTGTTTTGGGACATCAAATTCCCTTCAGTTTGTGGCTATCTCTGGCACCTGTTGTTTTAGGTGTGTCGATAGCATCACTAACGGAACTTTCCTTCAATTGGACTGGCTTTATTAGTGCAATGATTTCAAACATTGCATTTACCTACAGAAGTATATATTCAAAGAAAGCAATGACAGGAATGGATAGTACAAATGTGTATGCATACACCTCCATAATTGCTCTCTTCTTTTGCATCCCACCTGCAGTAATGATTGAGGGACCTCAGTTACTGCAGTATGGATTTAAGGATGCCATTACTAAAGTGGGTCTACCTAAATTCTTGTCTGATCTTTTCTGGATTGGCATGTTTTATCATCTCTACAATCAGCTTGCCACTAATACTTTGGAACGTGTCGCACCTCTAACACACGCTGTAGGGAATGTATTGAAGCGAGTTTTTGTGATCGGGTTTTCTATCGTGGTTTTTGGCAACAAGATTTCAACACAAACTGGAATTGGTACTGCTATAGCAATTGCTGGTGTTGCGATGTACTCCTTGATTAAAGCAAACCTCGAGGAACAAAAACGGAAGGCTGCTAAAATTTCAGCATCATAA 1239 43.18 MASITAVLQSSTLTHRLPPFNHAVVKSRLLPPIPSILFMHNRNVLPSSVPLSGKNFSFLTSKQPLKWTGSVHHPPVLVGATAADADGIPDGLIPSKSFSARFPALVTGFFFFMWYFLNVIFNILNKKVYNYFPYPYFVSVIHLLVGVGYCLISWAIGLPKRAPIDKELLLLLTPVAMCHALGHVMSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGHQIPFSLWLSLAPVVLGVSIASLTELSFNWTGFISAMISNIAFTYRSIYSKKAMTGMDSTNVYAYTSIIALFFCIPPAVMIEGPQLLQYGFKDAITKVGLPKFLSDLFWIGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVVFGNKISTQTGIGTAIAIAGVAMYSLIKANLEEQKRKAAKISAS 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57315873 57319001 - evm.model.ptg000006l.329 HCH1g0878 538897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0878 412 SUPERFAMILY Multidrug resistance efflux transporter EmrE 148 242 - -
HCH1g0878 412 PANTHER SOLUTE CARRIER FAMILY 35 101 394 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
HCH1g0878 412 Pfam Triose-phosphate Transporter family 106 393 IPR004853 -
HCH1g0878 412 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 105 403 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
HCH1g0878 412 SUPERFAMILY Multidrug resistance efflux transporter EmrE 322 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0942 HCH-Chr14:36966271 HCH1g0878 HCH-Chr1:57315873 9.60E-149 dispersed
HCH1g0878 HCH-Chr1:57315873 HCH6g0777 HCH-Chr6:42561872 3.10E-62 dispersed
HCH1g0878 HCH-Chr1:57315873 HCH14g0830 HCH-Chr14:36209074 1.80E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0878 K15283 - csv:101221040 623.239