Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0880 ATGTCGTCCGCCGAGAAGGAAAGAGAAACTCAGGTCTATTTGGCCAAACTCGCCGAACAGGCTGAACGCTACGACGAAATGGTTGAGTGTATGAAGAGTGTTGCTAAGCTAGATGTTGAGCTGACTGTGGAGGAGAGAAACTTGCTTTCTGTTGGATACAAAAATGTTATCGGAGCTAGGCGAGCTTCTTGGCGCATCATGTCTTCGATCGAGCAGAAGGAAGAATCTAAAAGCAACGAGCATAATGTTAAACTGATTAAGGGTTATCGTCAGAACGTCGAGGATGAGCTTTCCAAGATCTGTACTGATATCCTGACTATCATTGACAAGCATCTCATTCCCTCTTCTGCCTCTGCGGAAGCGTCCGTTTTCTATTACAAGATGAAAGGTGATTATTACCGATATCTTGCTGAGTTCAAAACAGATCAAGAAAGAAAGGAGGCAGCTGACCAGTCATTGAAGGGATATGAGAGTGCTTCAAGCACTGCAAATACCGAACTCCCATCGACCCACCCGATCCGTCTTGGCCTAGCTCTCAACTTTTCTGTCTTCTTCTATGAGATTATGAATTCTCCTGAAAGGGCTTGCCATTTGGCTAAACAGGCTTTTGATGAGGCAATTGCAGAGTTGGATACTTTGAGTGAGGAATCATACAAAGACAGTACCCTCATAATGCAGTTGCTGAGAGACAATCTCACTCTCTGGACATCTGATTTACCTGAAGATGGAGGTGAAGAATCCTTCAAAGGTGAAGACGCTAAACCCGCCACCGGCGCCTGA 780 45.26 MSSAEKERETQVYLAKLAEQAERYDEMVECMKSVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKSNEHNVKLIKGYRQNVEDELSKICTDILTIIDKHLIPSSASAEASVFYYKMKGDYYRYLAEFKTDQERKEAADQSLKGYESASSTANTELPSTHPIRLGLALNFSVFFYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEESFKGEDAKPATGA 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57324888 57327001 - evm.model.ptg000006l.327 HCH1g0880 538899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0880 259 PANTHER 14-3-3 PROTEIN 7 241 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
HCH1g0880 259 Coils Coil 196 216 - -
HCH1g0880 259 ProSitePatterns 14-3-3 proteins signature 2. 218 237 IPR023409 -
HCH1g0880 259 PIRSF 14-3-3 2 248 IPR000308 -
HCH1g0880 259 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
HCH1g0880 259 MobiDBLite consensus disorder prediction 238 259 - -
HCH1g0880 259 PRINTS 14-3-3 protein zeta signature 209 238 IPR000308 -
HCH1g0880 259 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
HCH1g0880 259 PRINTS 14-3-3 protein zeta signature 120 142 IPR000308 -
HCH1g0880 259 PRINTS 14-3-3 protein zeta signature 89 113 IPR000308 -
HCH1g0880 259 PRINTS 14-3-3 protein zeta signature 155 181 IPR000308 -
HCH1g0880 259 PRINTS 14-3-3 protein zeta signature 182 208 IPR000308 -
HCH1g0880 259 SUPERFAMILY 14-3-3 protein 7 238 IPR036815 -
HCH1g0880 259 SMART 1433_4 8 249 IPR023410 -
HCH1g0880 259 Pfam 14-3-3 protein 14 236 IPR023410 -
HCH1g0880 259 FunFam 14-3-3 protein epsilon 3 249 - -
HCH1g0880 259 Gene3D - 1 248 IPR036815 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0259 HCH-Chr12:1439879 HCH1g0880 HCH-Chr1:57324888 1.40E-105 dispersed
HCH1g0880 HCH-Chr1:57324888 HCH7g0108 HCH-Chr7:670533 2.20E-106 dispersed
HCH1g0880 HCH-Chr1:57324888 HCH4g0146 HCH-Chr4:811055 1.20E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0880 K06630 - csv:101221275 476.863