Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0892 ATGTCGGACGAGGAACATCAATTCGAATCCAAGGCCGACGCCGGAGCTTCCAAAACCTATCCGCAACAAGCTGGCACAATCCGTAAAAATGGTTATCTCGTAATCAAATCCAGACCTTGCAAGGTTGTCGAAGTTTCGACTTCGAAAACTGGAAAGCACGGACATGCTAAATGTCACTTTGTTGCTATTGATATTTTTAATGGCAAGAAGCTTGAGGATATTGTTCCTTCTTCTCATAATTGTGATGTTCCTCATGTCAACCGTACTGATTACCAGCTTATCGATATCTCTGAGGATGGATTTGTTAGTCTCCTGACGGATAATGGCAATACTAAGGATGACCTGAGGCTTCCAACCGATGATAGTCTGCACACCCAGATCAAGGATGGATTTGCCGAGGGAAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGGGAGGAGCAGATCTGCGCTCTCAAAGACATTGGCCCGAAATAG 480 44.79 MSDEEHQFESKADAGASKTYPQQAGTIRKNGYLVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLHTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57392630 57394907 + evm.model.ptg000006l.315 HCH1g0892 538911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0892 159 MobiDBLite consensus disorder prediction 1 21 - -
HCH1g0892 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
HCH1g0892 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
HCH1g0892 159 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
HCH1g0892 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
HCH1g0892 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
HCH1g0892 159 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
HCH1g0892 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
HCH1g0892 159 Gene3D - 1 85 IPR014722 -
HCH1g0892 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0003746(PANTHER)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
HCH1g0892 159 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
HCH1g0892 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
HCH1g0892 159 Gene3D - 86 158 IPR012340 -
HCH1g0892 159 CDD S1_eIF5A 86 156 - -
HCH1g0892 159 Pfam Translation initiation factor 5A-like, N-terminal 17 79 IPR048670 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0892 HCH-Chr1:57392630 HCH8g0931 HCH-Chr8:45622373 3.90E-82 dispersed
HCH1g0892 HCH-Chr1:57392630 HCH12g0416 HCH-Chr12:2420416 1.60E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0892 K03263 - mdm:103456388 313.923