Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0893 ATGGCTGATGATGAAGAAGAACACCTCTCGCCGCCGTCGAATTCTAAGGCCCATTCCTCGCGGCCCACTATCACTCTCCCGCCACGGACCTCCATGGAGTCTCTCTTCACTGGTGGGCCGGGTTTTGCTTTCGGGTTTAGCCCCGGGCCCATGACACTCGTCTCGAGCTTCTTCTCCGATTCCGACGACTGCAAATCTTTCTCCCAGCTTCTTGCCGGAGCTATGGCATCGCCGGTGGCAGTTCCTTCTCACCGTCCGATGCTCACTGAGCTTAAGGGTTCTGGTGAAGGCGATGGCTTTAGGCTGAATCGCCCGTCGGGCATTACCATATCGCCGCCATCGCCGCTACTTTATACGGTCCCGACCGGATTGAGTCCGGTGGGTTTGCTTGATTCTCCGGGGCTATTTTCGCCAGGTCAGGGACCTTTTGGAATGACACATCAGCAAGCTTTGGCACAGGTTACCATGCAGGCTGCACAAGCCTATTCTCAGCAGTTACAGGTGGAATCTTGCTCTTCATCGGTAGCACCCGCTACATCCCCTGCAGAGTTTCCAGCCTTTATCAGTGACAAAGCTGCAGATCAACAGATGGCACCTCCATCACCAAACTCTGCAGTTGCAACCAAGGAGTCGTCGGATATCTCTCAATCAGATCAAAGAATTCAGTCTTCTTCATCTAATATAGATAGGCCTGCTCATGATGGCTACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTACTACAAATGTACACATCCAAATTGTCTCGTCAGGAAAAAGGTTGAGCGTTCTATGGAAGGCCAAGTCACTGAAATTATCTACAAAGGTGAGCACAACCATGAACGTCCTCAGTCCAACAAGCGGGCTAGGGATACTGGAAATTCTAATGGATGCCCAAGTATTACTGGAAATCCTGAGCTATCTTCTCAAGTTCAGAGTGGGTATTTGAATAAATCAAATGAGCAAATAGTCATGCATTCAATTGCAAAGAAGGATCAGGATTCTAGCCATGTTACACATGATCAGGTATCTGGTTCCAGTGACAGCGAGGAAGTGAGTGAGATTGAAACTAGAGAAAATAAAAAAGATGAAGATGAACCCGATCCCAAGAGACGGAATACCGAGGTTAGAGTTTCTGAGCCAGCATCTTCTCATAGAACGCTCACAGAATCTAGAATTATTGTGCAGACAACAAGTGAAGTTGATCTTCTGGATGATGGCTACAGGTGGCGGAAGTATGGGCAGAAGATTGTTAAAGGCAATCCTTACCCCAGGAGCTATTATAAATGCACAACTCCGGGATGCAACGTTCGTAAACATGTTGAAAGAGCTTCAACAGACCCTAAAGCTGTCATAACGACTTATGAGGGTAAACATACTCATGATGTGCCAGCTGGTAGAACCAGCAGCCACAGTACAGTCAACAGTAATGTTTCTCAGCAAAAGTCACAGAAAATGGTTGCCGAGAAAAAGTTTCTTAGTAAAAAGGCTGATTTTGGAAACTCAGATCAGCAGCCTGTGGGACTCTTGCGATTAAAGGAAGAACAATAG 1575 47.17 MADDEEEHLSPPSNSKAHSSRPTITLPPRTSMESLFTGGPGFAFGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVAVPSHRPMLTELKGSGEGDGFRLNRPSGITISPPSPLLYTVPTGLSPVGLLDSPGLFSPGQGPFGMTHQQALAQVTMQAAQAYSQQLQVESCSSSVAPATSPAEFPAFISDKAADQQMAPPSPNSAVATKESSDISQSDQRIQSSSSNIDRPAHDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCLVRKKVERSMEGQVTEIIYKGEHNHERPQSNKRARDTGNSNGCPSITGNPELSSQVQSGYLNKSNEQIVMHSIAKKDQDSSHVTHDQVSGSSDSEEVSEIETRENKKDEDEPDPKRRNTEVRVSEPASSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHTHDVPAGRTSSHSTVNSNVSQQKSQKMVAEKKFLSKKADFGNSDQQPVGLLRLKEEQ 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57396564 57399351 + evm.model.ptg000006l.314 HCH1g0893 538912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0893 524 MobiDBLite consensus disorder prediction 1 33 - -
HCH1g0893 524 MobiDBLite consensus disorder prediction 194 244 - -
HCH1g0893 524 Pfam WRKY DNA -binding domain 413 470 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH1g0893 524 Pfam WRKY DNA -binding domain 233 289 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH1g0893 524 MobiDBLite consensus disorder prediction 474 495 - -
HCH1g0893 524 MobiDBLite consensus disorder prediction 13 32 - -
HCH1g0893 524 MobiDBLite consensus disorder prediction 281 296 - -
HCH1g0893 524 FunFam WRKY transcription factor 33 399 465 - -
HCH1g0893 524 SMART WRKY_cls 232 290 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH1g0893 524 SMART WRKY_cls 412 471 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH1g0893 524 MobiDBLite consensus disorder prediction 297 332 - -
HCH1g0893 524 MobiDBLite consensus disorder prediction 468 524 - -
HCH1g0893 524 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 164 487 IPR044810 GO:0003700(InterPro)
HCH1g0893 524 Gene3D WRKY domain 397 473 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH1g0893 524 Gene3D WRKY domain 216 292 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH1g0893 524 ProSiteProfiles WRKY domain profile. 234 291 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH1g0893 524 MobiDBLite consensus disorder prediction 359 387 - -
HCH1g0893 524 ProSiteProfiles WRKY domain profile. 407 472 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH1g0893 524 MobiDBLite consensus disorder prediction 280 399 - -
HCH1g0893 524 MobiDBLite consensus disorder prediction 196 231 - -
HCH1g0893 524 SUPERFAMILY WRKY DNA-binding domain 231 291 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH1g0893 524 FunFam WRKY transcription factor 219 292 - -
HCH1g0893 524 SUPERFAMILY WRKY DNA-binding domain 404 472 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0893 HCH-Chr1:57396564 HCH3g1486 HCH-Chr3:52888217 1.40E-64 dispersed
HCH11g0240 HCH-Chr11:2178035 HCH1g0893 HCH-Chr1:57396564 1.50E-59 transposed
HCH6g0924 HCH-Chr6:44014255 HCH1g0893 HCH-Chr1:57396564 9.40E-70 transposed
HCH8g0932 HCH-Chr8:45626758 HCH1g0893 HCH-Chr1:57396564 9.80E-41 transposed
HCH1g0893 HCH-Chr1:57396564 HCH13g0701 HCH-Chr13:5721942 3.10E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33093 PF03106 WRKY 7.50E-26 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0893 - - - 0.0