Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0898 | ATGAGCTTTGAAACGTCCGGCAGCTCGTCGTCGTCCGGCGCCGGCAAGGAGAAGCAGAAGGAGAAAGCGAGAGTTAGTAGAACTTCACTGATACTGTGGCACGCTCATCAGAATGATCCAACCGCCGTCCGGAAACTTCTCGAAGAAGATCAGTCTTTGGTCCACGCTAGAGATTACGATAGCCGTACTCCTCTCCACGTGGCATCGCTTCATGGATGGATCGATATTGCTAAGTGTTTGATTGAGCATGGTGCTGATGTTAATGCTCAAGATCGCTGGAAGAATACTCCACTAGCTGATGCAGAAGGAGCTAAGAAACCTACCATGATCGAGCTATTAAAATCCTGTGGTGGCCTGTCCTTTGGCCAAAATGGAAGCCATTTTGAACCAAAGCCTGTTCCCCCTCCTCTGCCAAATAAATGTGACTGGGAAATTGATCCTTCTGAGCTTGACTTTTCTACTTCAGCTATTATTGGCAAGGGGTCATTTGGTGAAATTTTGAGGGCCTATTGGCGTGGAACTCCTGTAGCCGTCAAACGTATTCTTCCATCACTTTCAGATGATAGATTAGTGATTCAGGATTTCCGGCATGAGGTTAATTTGTTGGTGAAGCTACGCCACCCCAATATTGTCCAATTTCTTGGAGCTGTCACTGAGAAGAAGCCCCTCATGTTAATTACAGAATATTTAAGAGGGGGTGATCTTCACCAGTACCTCAAGGATAAAGGTTCGCTCAGTCCTGCAACAGCCATCAATTTTGCAATGGACATTGCCAGAGGTATGGCTTATCTTCACAATGAGCCGAACGTTATAATTCATCGTGACCTAAAACCAAGGAACGTTCTTTTAGTCAATTCTGGTGCAGACCATCTAAAAGTTGGTGATTTTGGTCTAAGTAAACTCATCAAGGTTCAGAATTCACATGACGTTTACAAAATGACTGGCGAGACTGGGAGCTACCGATATATGGCTCCTGAAGTTTTTAAGCACAGAAAATATGATAAGAAGGTTGATGTTTTTTCTTTTGCAATGATATTATACGAGATGCTTGAAGGAGATCCTCCGCTGGCAAATTATGAGCCTTATGAAGCTGCTAAGTATGTGGCTGAAGGACATAGGCCGATGTTCCGTGCGAAAGGATACCTTCCTGTACTGAGAGAGTTAACCGAAGAATGTTGGGCTGCCGACATGAATCAGAGACCTTCTTTCTTGGATATCCTCAAGAGACTTGAAAAGATAAAGGAAAATCTACCAACGGATAGCCACTGGACTTTATTCAATGCATAA | 1287 | 44.13 | MSFETSGSSSSSGAGKEKQKEKARVSRTSLILWHAHQNDPTAVRKLLEEDQSLVHARDYDSRTPLHVASLHGWIDIAKCLIEHGADVNAQDRWKNTPLADAEGAKKPTMIELLKSCGGLSFGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSTSAIIGKGSFGEILRAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPATAINFAMDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPMFRAKGYLPVLRELTEECWAADMNQRPSFLDILKRLEKIKENLPTDSHWTLFNA | 428 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 57434513 | 57445682 | + | evm.model.ptg000006l.309 | HCH1g0898 | 538917 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0898 | 428 | ProSiteProfiles | Ankyrin repeat profile. | 60 | 92 | IPR002110 | GO:0005515(InterPro) | |
HCH1g0898 | 428 | SUPERFAMILY | Ankyrin repeat | 29 | 117 | IPR036770 | - | |
HCH1g0898 | 428 | SMART | serkin_6 | 152 | 417 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH1g0898 | 428 | PIRSF | ILK | 2 | 428 | - | - | |
HCH1g0898 | 428 | CDD | STKc_MAP3K-like | 158 | 410 | - | - | |
HCH1g0898 | 428 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 271 | 283 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH1g0898 | 428 | SMART | ANK_2a | 60 | 89 | IPR002110 | GO:0005515(InterPro) | |
HCH1g0898 | 428 | ProSiteProfiles | Protein kinase domain profile. | 152 | 425 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH1g0898 | 428 | Gene3D | Transferase(Phosphotransferase) domain 1 | 232 | 424 | - | - | |
HCH1g0898 | 428 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
HCH1g0898 | 428 | Pfam | Protein tyrosine and serine/threonine kinase | 155 | 410 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH1g0898 | 428 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 60 | 413 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
HCH1g0898 | 428 | Gene3D | Phosphorylase Kinase; domain 1 | 137 | 231 | - | - | |
HCH1g0898 | 428 | FunFam | serine/threonine-protein kinase STY46-like | 145 | 231 | - | - | |
HCH1g0898 | 428 | FunFam | Integrin-linked protein kinase family | 231 | 426 | - | - | |
HCH1g0898 | 428 | ProSiteProfiles | Ankyrin repeat region circular profile. | 60 | 92 | - | - | |
HCH1g0898 | 428 | Pfam | Ankyrin repeats (3 copies) | 33 | 114 | IPR002110 | GO:0005515(InterPro) | |
HCH1g0898 | 428 | SUPERFAMILY | Protein kinase-like (PK-like) | 150 | 422 | IPR011009 | - | |
HCH1g0898 | 428 | PRINTS | Tyrosine kinase catalytic domain signature | 265 | 283 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH1g0898 | 428 | PRINTS | Tyrosine kinase catalytic domain signature | 227 | 240 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH1g0898 | 428 | PRINTS | Tyrosine kinase catalytic domain signature | 381 | 403 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH1g0898 | 428 | ProSitePatterns | Protein kinases ATP-binding region signature. | 158 | 179 | IPR017441 | GO:0005524(InterPro) | |
HCH1g0898 | 428 | Gene3D | - | 4 | 124 | IPR036770 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0898 | HCH-Chr1:57434513 | HCH3g0742 | HCH-Chr3:5357484 | 1.20E-64 | dispersed | |
HCH1g0898 | HCH-Chr1:57434513 | HCH2g0899 | HCH-Chr2:52483724 | 1.60E-66 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81293 | PF07714 | PK_Tyr_Ser-Thr | 7.70E-64 | CL0016 | HCH | PK |
Pathway information
