Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0898 ATGAGCTTTGAAACGTCCGGCAGCTCGTCGTCGTCCGGCGCCGGCAAGGAGAAGCAGAAGGAGAAAGCGAGAGTTAGTAGAACTTCACTGATACTGTGGCACGCTCATCAGAATGATCCAACCGCCGTCCGGAAACTTCTCGAAGAAGATCAGTCTTTGGTCCACGCTAGAGATTACGATAGCCGTACTCCTCTCCACGTGGCATCGCTTCATGGATGGATCGATATTGCTAAGTGTTTGATTGAGCATGGTGCTGATGTTAATGCTCAAGATCGCTGGAAGAATACTCCACTAGCTGATGCAGAAGGAGCTAAGAAACCTACCATGATCGAGCTATTAAAATCCTGTGGTGGCCTGTCCTTTGGCCAAAATGGAAGCCATTTTGAACCAAAGCCTGTTCCCCCTCCTCTGCCAAATAAATGTGACTGGGAAATTGATCCTTCTGAGCTTGACTTTTCTACTTCAGCTATTATTGGCAAGGGGTCATTTGGTGAAATTTTGAGGGCCTATTGGCGTGGAACTCCTGTAGCCGTCAAACGTATTCTTCCATCACTTTCAGATGATAGATTAGTGATTCAGGATTTCCGGCATGAGGTTAATTTGTTGGTGAAGCTACGCCACCCCAATATTGTCCAATTTCTTGGAGCTGTCACTGAGAAGAAGCCCCTCATGTTAATTACAGAATATTTAAGAGGGGGTGATCTTCACCAGTACCTCAAGGATAAAGGTTCGCTCAGTCCTGCAACAGCCATCAATTTTGCAATGGACATTGCCAGAGGTATGGCTTATCTTCACAATGAGCCGAACGTTATAATTCATCGTGACCTAAAACCAAGGAACGTTCTTTTAGTCAATTCTGGTGCAGACCATCTAAAAGTTGGTGATTTTGGTCTAAGTAAACTCATCAAGGTTCAGAATTCACATGACGTTTACAAAATGACTGGCGAGACTGGGAGCTACCGATATATGGCTCCTGAAGTTTTTAAGCACAGAAAATATGATAAGAAGGTTGATGTTTTTTCTTTTGCAATGATATTATACGAGATGCTTGAAGGAGATCCTCCGCTGGCAAATTATGAGCCTTATGAAGCTGCTAAGTATGTGGCTGAAGGACATAGGCCGATGTTCCGTGCGAAAGGATACCTTCCTGTACTGAGAGAGTTAACCGAAGAATGTTGGGCTGCCGACATGAATCAGAGACCTTCTTTCTTGGATATCCTCAAGAGACTTGAAAAGATAAAGGAAAATCTACCAACGGATAGCCACTGGACTTTATTCAATGCATAA 1287 44.13 MSFETSGSSSSSGAGKEKQKEKARVSRTSLILWHAHQNDPTAVRKLLEEDQSLVHARDYDSRTPLHVASLHGWIDIAKCLIEHGADVNAQDRWKNTPLADAEGAKKPTMIELLKSCGGLSFGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSTSAIIGKGSFGEILRAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPATAINFAMDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPMFRAKGYLPVLRELTEECWAADMNQRPSFLDILKRLEKIKENLPTDSHWTLFNA 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57434513 57445682 + evm.model.ptg000006l.309 HCH1g0898 538917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0898 428 ProSiteProfiles Ankyrin repeat profile. 60 92 IPR002110 GO:0005515(InterPro)
HCH1g0898 428 SUPERFAMILY Ankyrin repeat 29 117 IPR036770 -
HCH1g0898 428 SMART serkin_6 152 417 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0898 428 PIRSF ILK 2 428 - -
HCH1g0898 428 CDD STKc_MAP3K-like 158 410 - -
HCH1g0898 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0898 428 SMART ANK_2a 60 89 IPR002110 GO:0005515(InterPro)
HCH1g0898 428 ProSiteProfiles Protein kinase domain profile. 152 425 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0898 428 Gene3D Transferase(Phosphotransferase) domain 1 232 424 - -
HCH1g0898 428 MobiDBLite consensus disorder prediction 1 23 - -
HCH1g0898 428 Pfam Protein tyrosine and serine/threonine kinase 155 410 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0898 428 PANTHER SERINE-THREONINE PROTEIN KINASE 60 413 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH1g0898 428 Gene3D Phosphorylase Kinase; domain 1 137 231 - -
HCH1g0898 428 FunFam serine/threonine-protein kinase STY46-like 145 231 - -
HCH1g0898 428 FunFam Integrin-linked protein kinase family 231 426 - -
HCH1g0898 428 ProSiteProfiles Ankyrin repeat region circular profile. 60 92 - -
HCH1g0898 428 Pfam Ankyrin repeats (3 copies) 33 114 IPR002110 GO:0005515(InterPro)
HCH1g0898 428 SUPERFAMILY Protein kinase-like (PK-like) 150 422 IPR011009 -
HCH1g0898 428 PRINTS Tyrosine kinase catalytic domain signature 265 283 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0898 428 PRINTS Tyrosine kinase catalytic domain signature 227 240 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0898 428 PRINTS Tyrosine kinase catalytic domain signature 381 403 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0898 428 ProSitePatterns Protein kinases ATP-binding region signature. 158 179 IPR017441 GO:0005524(InterPro)
HCH1g0898 428 Gene3D - 4 124 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0898 HCH-Chr1:57434513 HCH3g0742 HCH-Chr3:5357484 1.20E-64 dispersed
HCH1g0898 HCH-Chr1:57434513 HCH2g0899 HCH-Chr2:52483724 1.60E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81293 PF07714 PK_Tyr_Ser-Thr 7.70E-64 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0898 - - - 0.0