Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0906 ATGATTCCATTTCCAGGATGTTTTAGAAGAAGATCATTATTTCCAAGACCCACAAATCGTCTCCGACGCGGCGGCGCTTCATCAATGAAGCTGACTGAGATCTTGACTTCTTTACTGCTTGCTCTTCCGCTTCTTGTTTTTCTTCTCCTGCTTCTTCGGAATCCAACGCCGGATCGTGCTCTGGGTTTTGCTGAAGCTAGAGTTTTGGAGAGACTGGCTACGAATGGCAGTTCTCAAATTTCAGAAACCGGGTTCTCTCGAACTACTGACTTACCTAGAGATCACCTTGCTGGAGGTCTTCTCCTGTCTGGTTTTGATGAAGAATCATGCTTGAGCAGGTATCAATCAAGTTTATATCGAAGATCTTCACCGTACAAACCTTCTTCTTACCTCCTCTCGAAACTTAGAAATTACGAAGCTCTTCATCGACGGTGTGGACCCAACACAAAATCCTATGATGAAGCACTAGAGCAACTCAAGTCTGGCAGTAATGTTGGTTTGACAGAGTGTAAATATGTTGTGTGGATATCTTATAGTGGCTTGGGAAACAAGATACTCACGTTGGCTTCTGCATTCCTTCATGCCCTCCTTACCAATCGTGTCTTGCTTGTCGACCCAGGGAAGGATATGGCTGATCTATTTTGCGAACCGTTCCCAGAAAAATCTTGGTTGCTACCGAATGACTTCCCCTTGAAGGATCAATTTGATACCTTTGATCAGAAATCTCCTCTTTGTCATGGAAACATGCTGAAGAAGAATACTCTAAACACATCAACAGAATTGCTTCCATCATATTTATATTTACATTTAGCTCATGATTATGATGATCATGATAAACTTTTCTTCTGTGATGAGGATCAGGCTCTTTTAGGCAGAGTCCCTTGGCTGATACTCAGGACAGATAACTATTTTATTCCATCTCTCTTCCTGATCCCATCTTTTGAACAAGAACTAAGTAACTTATTTCCCCAGAAAGATACCGTCTTCCACCATTTGAGCCGGTATCTTTTCCACCCGTCGAATCATGTTTGGGGACTAATTACTAGATACTACCAATCCTACCTATCCAATGCTGATGAAAGAATAGGTATTCAAGTGCGGGTTTTCGAAGATGGACCTGGACCATTCGGCCATATAATAGATCAAATTTTAGCCTGCACTCATGAGAAGAATATACTGCCTAAAGTTGACAAGCAGGGCTACTCTTCCATTCCATCAGAAAACTCAAAAGTGAGAGCTGTTTTAATGACATCTTTACATTCTGGGTACTATGAGAAAGTAAGGACCTTGTATTGGGAACACCCAACCACAAATGGAGATGTGGTTGGAGTTTTCCAGCCAAGTTACGAAATGTATCAGCAGACAGAGAAGAAGACTCACAACCGAAAAGCGTGGGCCGAAATGTATCTCCTCAGTTTGAGTGATGTTTTGGTCACAAGTGCATGGTCAACATTTGGTTATGTAGCTCAAGGTCTTGGTGGATTGAAGCCATGGATTCTTTACAAGCCTGAAAACATGACTGCCCCGGATCCGCCTTGCCGTCGAGTCATGTCGATGGAGCCTTGCTTTCATGCTCCCCCATTCTATGACTGTAAGGCAAAGAAAGGAATAGATACTGGTGAAGTTGTTCCCCATGTGAGACATTGTGAAGATATGAGCTGGGGCCTTAAGCTTGTTGATTCCCATGATGAATTATAA 1698 42.64 MIPFPGCFRRRSLFPRPTNRLRRGGASSMKLTEILTSLLLALPLLVFLLLLLRNPTPDRALGFAEARVLERLATNGSSQISETGFSRTTDLPRDHLAGGLLLSGFDEESCLSRYQSSLYRRSSPYKPSSYLLSKLRNYEALHRRCGPNTKSYDEALEQLKSGSNVGLTECKYVVWISYSGLGNKILTLASAFLHALLTNRVLLVDPGKDMADLFCEPFPEKSWLLPNDFPLKDQFDTFDQKSPLCHGNMLKKNTLNTSTELLPSYLYLHLAHDYDDHDKLFFCDEDQALLGRVPWLILRTDNYFIPSLFLIPSFEQELSNLFPQKDTVFHHLSRYLFHPSNHVWGLITRYYQSYLSNADERIGIQVRVFEDGPGPFGHIIDQILACTHEKNILPKVDKQGYSSIPSENSKVRAVLMTSLHSGYYEKVRTLYWEHPTTNGDVVGVFQPSYEMYQQTEKKTHNRKAWAEMYLLSLSDVLVTSAWSTFGYVAQGLGGLKPWILYKPENMTAPDPPCRRVMSMEPCFHAPPFYDCKAKKGIDTGEVVPHVRHCEDMSWGLKLVDSHDEL 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57481918 57484729 + evm.model.ptg000006l.301 HCH1g0906 538925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0906 565 Pfam Xyloglucan fucosyltransferase 82 532 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
HCH1g0906 565 Gene3D - 167 218 - -
HCH1g0906 565 PANTHER FUCOSYLTRANSFERASE 2-RELATED 22 561 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
HCH1g0906 565 FunFam Galactoside 2-alpha-L-fucosyltransferase 168 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0906 K13681 - - csv:101216541 846.269
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0553 HCH-Chr6:31261761 HCH1g0906 HCH-Chr1:57481918 4.80E-164 transposed
HCH1g0906 HCH-Chr1:57481918 HCH3g0077 HCH-Chr3:445407 8.40E-204 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0906 . 75 560 Xyloglucan Fucosyltransferase1 AT1G14080 55.0 5.8e-162 567.8
HCH3g0077 . 107 584 Xyloglucan Fucosyltransferase1 AT1G14080 55.7 1.5e-154 543.1
HCH1g0906 . 83 562 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 8.6e-171 597.0
HCH3g0077 . 116 585 Xyloglucan Fucosyltransferase1 AT1G14100 58.8 2.7e-164 575.5
HCH6g0553 . 42 540 Xyloglucan Fucosyltransferase1 AT1G14100 50.5 8.4e-142 500.7
HCH1g0906 . 94 565 Xyloglucan Fucosyltransferase1 AT1G14110 53.8 1.3e-141 500.0
HCH3g0077 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14110 53.6 2.6e-137 485.7
HCH7g0644 . 1 512 Xyloglucan Fucosyltransferase1 AT1G49710 64.2 1.8e-192 669.1
HCH11g0893 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.5 1.0e-179 626.7
HCH13g0281 . 1 397 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 1.0e-166 583.2
HCH3g0077 . 49 555 Xyloglucan Fucosyltransferase1 AT1G74420 50.7 1.4e-137 486.9
HCH1g0906 . 27 561 Xyloglucan Fucosyltransferase1 AT2G03210 58.2 2.1e-186 649.0
HCH3g0077 . 97 584 Xyloglucan Fucosyltransferase1 AT2G03210 58.2 4.1e-166 581.6
HCH1g0906 . 26 559 Xyloglucan Fucosyltransferase1 AT2G03220 63.6 2.6e-205 711.8
HCH3g0077 . 54 582 Xyloglucan Fucosyltransferase1 AT2G03220 62.3 2.4e-195 678.7
HCH6g0553 . 53 537 Xyloglucan Fucosyltransferase1 AT2G03220 55.2 2.4e-158 555.8
HCH1g0906 . 87 560 Xyloglucan Fucosyltransferase1 AT2G15350 52.0 6.8e-152 534.3
HCH3g0077 . 113 584 Xyloglucan Fucosyltransferase1 AT2G15350 53.4 1.3e-147 520.0
HCH1g0906 . 87 561 Xyloglucan Fucosyltransferase1 AT2G15370 51.8 2.3e-147 519.2
HCH3g0077 . 113 584 Xyloglucan Fucosyltransferase1 AT2G15370 52.4 4.6e-143 505.0
HCH1g0906 . 93 561 Xyloglucan Fucosyltransferase1 AT2G15390 54.0 3.5e-151 531.9
HCH3g0077 . 116 584 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 1.1e-144 510.4
HCH7g0644 . 1 512 Xyloglucan Fucosyltransferase1 AT3G19280 64.4 2.3e-192 668.7
HCH11g0893 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.3 1.6e-185 646.0
HCH3g0077 . 49 555 Xyloglucan Fucosyltransferase1 AT1G74420 50.7 1.4e-137 486.9
HCH1g0906 . 27 561 Xyloglucan Fucosyltransferase1 AT2G03210 58.2 2.1e-186 649.0
HCH3g0077 . 97 584 Xyloglucan Fucosyltransferase1 AT2G03210 58.2 4.1e-166 581.6
HCH1g0906 . 26 559 Xyloglucan Fucosyltransferase1 AT2G03220 63.6 2.6e-205 711.8
HCH3g0077 . 54 582 Xyloglucan Fucosyltransferase1 AT2G03220 62.3 2.4e-195 678.7
HCH6g0553 . 53 537 Xyloglucan Fucosyltransferase1 AT2G03220 55.2 2.4e-158 555.8
HCH1g0906 . 27 561 Xyloglucan Fucosyltransferase1 AT2G03210 58.2 2.1e-186 649.0
HCH3g0077 . 97 584 Xyloglucan Fucosyltransferase1 AT2G03210 58.2 4.1e-166 581.6
HCH3g0077 . 49 555 Xyloglucan Fucosyltransferase1 AT1G74420 50.7 1.4e-137 486.9
HCH1g0906 . 93 561 Xyloglucan Fucosyltransferase1 AT2G15390 54.0 3.5e-151 531.9
HCH3g0077 . 116 584 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 1.1e-144 510.4
HCH1g0906 . 87 561 Xyloglucan Fucosyltransferase1 AT2G15370 51.8 2.3e-147 519.2
HCH3g0077 . 113 584 Xyloglucan Fucosyltransferase1 AT2G15370 52.4 4.6e-143 505.0
HCH1g0906 . 75 560 Xyloglucan Fucosyltransferase1 AT1G14080 55.0 5.8e-162 567.8
HCH3g0077 . 107 584 Xyloglucan Fucosyltransferase1 AT1G14080 55.7 1.5e-154 543.1
HCH1g0906 . 83 562 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 8.6e-171 597.0
HCH3g0077 . 116 585 Xyloglucan Fucosyltransferase1 AT1G14100 58.8 2.7e-164 575.5
HCH6g0553 . 42 540 Xyloglucan Fucosyltransferase1 AT1G14100 50.5 8.4e-142 500.7
HCH1g0906 . 94 565 Xyloglucan Fucosyltransferase1 AT1G14110 53.8 1.3e-141 500.0
HCH3g0077 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14110 53.6 2.6e-137 485.7
HCH1g0906 . 87 560 Xyloglucan Fucosyltransferase1 AT2G15350 52.0 6.8e-152 534.3
HCH3g0077 . 113 584 Xyloglucan Fucosyltransferase1 AT2G15350 53.4 1.3e-147 520.0
HCH7g0644 . 1 512 Xyloglucan Fucosyltransferase1 AT3G19280 64.4 2.3e-192 668.7
HCH11g0893 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.3 1.6e-185 646.0
HCH7g0644 . 1 512 Xyloglucan Fucosyltransferase1 AT1G49710 64.2 1.8e-192 669.1
HCH11g0893 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.5 1.0e-179 626.7
HCH13g0281 . 1 397 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 1.0e-166 583.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009001 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 33