Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0906 ATGATTCCATTTCCAGGATGTTTTAGAAGAAGATCATTATTTCCAAGACCCACAAATCGTCTCCGACGCGGCGGCGCTTCATCAATGAAGCTGACTGAGATCTTGACTTCTTTACTGCTTGCTCTTCCGCTTCTTGTTTTTCTTCTCCTGCTTCTTCGGAATCCAACGCCGGATCGTGCTCTGGGTTTTGCTGAAGCTAGAGTTTTGGAGAGACTGGCTACGAATGGCAGTTCTCAAATTTCAGAAACCGGGTTCTCTCGAACTACTGACTTACCTAGAGATCACCTTGCTGGAGGTCTTCTCCTGTCTGGTTTTGATGAAGAATCATGCTTGAGCAGGTATCAATCAAGTTTATATCGAAGATCTTCACCGTACAAACCTTCTTCTTACCTCCTCTCGAAACTTAGAAATTACGAAGCTCTTCATCGACGGTGTGGACCCAACACAAAATCCTATGATGAAGCACTAGAGCAACTCAAGTCTGGCAGTAATGTTGGTTTGACAGAGTGTAAATATGTTGTGTGGATATCTTATAGTGGCTTGGGAAACAAGATACTCACGTTGGCTTCTGCATTCCTTCATGCCCTCCTTACCAATCGTGTCTTGCTTGTCGACCCAGGGAAGGATATGGCTGATCTATTTTGCGAACCGTTCCCAGAAAAATCTTGGTTGCTACCGAATGACTTCCCCTTGAAGGATCAATTTGATACCTTTGATCAGAAATCTCCTCTTTGTCATGGAAACATGCTGAAGAAGAATACTCTAAACACATCAACAGAATTGCTTCCATCATATTTATATTTACATTTAGCTCATGATTATGATGATCATGATAAACTTTTCTTCTGTGATGAGGATCAGGCTCTTTTAGGCAGAGTCCCTTGGCTGATACTCAGGACAGATAACTATTTTATTCCATCTCTCTTCCTGATCCCATCTTTTGAACAAGAACTAAGTAACTTATTTCCCCAGAAAGATACCGTCTTCCACCATTTGAGCCGGTATCTTTTCCACCCGTCGAATCATGTTTGGGGACTAATTACTAGATACTACCAATCCTACCTATCCAATGCTGATGAAAGAATAGGTATTCAAGTGCGGGTTTTCGAAGATGGACCTGGACCATTCGGCCATATAATAGATCAAATTTTAGCCTGCACTCATGAGAAGAATATACTGCCTAAAGTTGACAAGCAGGGCTACTCTTCCATTCCATCAGAAAACTCAAAAGTGAGAGCTGTTTTAATGACATCTTTACATTCTGGGTACTATGAGAAAGTAAGGACCTTGTATTGGGAACACCCAACCACAAATGGAGATGTGGTTGGAGTTTTCCAGCCAAGTTACGAAATGTATCAGCAGACAGAGAAGAAGACTCACAACCGAAAAGCGTGGGCCGAAATGTATCTCCTCAGTTTGAGTGATGTTTTGGTCACAAGTGCATGGTCAACATTTGGTTATGTAGCTCAAGGTCTTGGTGGATTGAAGCCATGGATTCTTTACAAGCCTGAAAACATGACTGCCCCGGATCCGCCTTGCCGTCGAGTCATGTCGATGGAGCCTTGCTTTCATGCTCCCCCATTCTATGACTGTAAGGCAAAGAAAGGAATAGATACTGGTGAAGTTGTTCCCCATGTGAGACATTGTGAAGATATGAGCTGGGGCCTTAAGCTTGTTGATTCCCATGATGAATTATAA 1698 42.64 MIPFPGCFRRRSLFPRPTNRLRRGGASSMKLTEILTSLLLALPLLVFLLLLLRNPTPDRALGFAEARVLERLATNGSSQISETGFSRTTDLPRDHLAGGLLLSGFDEESCLSRYQSSLYRRSSPYKPSSYLLSKLRNYEALHRRCGPNTKSYDEALEQLKSGSNVGLTECKYVVWISYSGLGNKILTLASAFLHALLTNRVLLVDPGKDMADLFCEPFPEKSWLLPNDFPLKDQFDTFDQKSPLCHGNMLKKNTLNTSTELLPSYLYLHLAHDYDDHDKLFFCDEDQALLGRVPWLILRTDNYFIPSLFLIPSFEQELSNLFPQKDTVFHHLSRYLFHPSNHVWGLITRYYQSYLSNADERIGIQVRVFEDGPGPFGHIIDQILACTHEKNILPKVDKQGYSSIPSENSKVRAVLMTSLHSGYYEKVRTLYWEHPTTNGDVVGVFQPSYEMYQQTEKKTHNRKAWAEMYLLSLSDVLVTSAWSTFGYVAQGLGGLKPWILYKPENMTAPDPPCRRVMSMEPCFHAPPFYDCKAKKGIDTGEVVPHVRHCEDMSWGLKLVDSHDEL 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57481918 57484729 + evm.model.ptg000006l.301 HCH1g0906 538925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0906 565 Pfam Xyloglucan fucosyltransferase 82 532 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
HCH1g0906 565 Gene3D - 167 218 - -
HCH1g0906 565 PANTHER FUCOSYLTRANSFERASE 2-RELATED 22 561 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
HCH1g0906 565 FunFam Galactoside 2-alpha-L-fucosyltransferase 168 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0553 HCH-Chr6:31261761 HCH1g0906 HCH-Chr1:57481918 4.80E-164 transposed
HCH1g0906 HCH-Chr1:57481918 HCH3g0077 HCH-Chr3:445407 8.40E-204 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0906 K13681 - csv:101216541 846.269