Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0914 ATGGCTTCTGTGTTTTTCTTCCTGGTGGGGTTTCTTGCCTTAGTCTTTTCTGCTGATGGGTATGGAGGAGGAGGCTGGAATAGTGCCCATGCCACCTTCTATGGTGGGAGTGATGCTTCTGGCACAATGGGTGGAGCTTGTGGGTATGGTAATCTTTACAGTCAAGGATATGGGACGAATACTGCTGCTTTGAGTACGGCTTTGTTTAACAATGGGTTGAGTTGTGGGTCATGTTATGAAATTAGGTGCAATAGTGACCCAAAATGGTGCCTGCCTGGCTCTATTTTGGTCACAGCCACCAATTTCTGCCCACCAAATAATGCCCTGCCTAACAATGCTGGAGGATGGTGCAATCCTCCTCTTCAACACTTTGATCTCTCTCAGCCTGTCTTCCAACGTATTGCCCTTTATAGAGCTGGAATTGTTCCTGTTGCCTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGCATAAGGTTCACCATTAATGGCCATTCCTACTTCAACCTTGTCCTCATCACCAACGTAGGTGGTGCTGGTGATGTACATGCAGTTTCCATTAAAGGGTCAAGCACTGGTTGGCAATCGATGTCTAGAAATTGGGGACAGAACTGGCAGAGCAACAGCTATCTGAATGGCCAGAGCCTCTCCTTCAAGGTCACCACCAGCGACGGCCGCACCGTCTTCTCCAACAATGCTGTCCCGGCTGGATGGTCCTTTGGGCAAACTTTCAGTGGTGTCCAATTCTGA 747 49.13 MASVFFFLVGFLALVFSADGYGGGGWNSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCNSDPKWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQRIALYRAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSSTGWQSMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVFSNNAVPAGWSFGQTFSGVQF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57522355 57523570 + evm.model.ptg000006l.293 HCH1g0914 538933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0914 248 Gene3D - 16 152 IPR036908 -
HCH1g0914 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664(InterPro)
HCH1g0914 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664(InterPro)
HCH1g0914 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664(InterPro)
HCH1g0914 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664(InterPro)
HCH1g0914 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664(InterPro)
HCH1g0914 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
HCH1g0914 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664(InterPro)
HCH1g0914 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664(InterPro)
HCH1g0914 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664(InterPro)
HCH1g0914 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576(InterPro)
HCH1g0914 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
HCH1g0914 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576(InterPro)
HCH1g0914 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
HCH1g0914 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
HCH1g0914 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
HCH1g0914 248 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
HCH1g0914 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
HCH1g0914 248 FunFam Expansin 156 248 - -
HCH1g0914 248 CDD DPBB_EXPA_N 25 151 - -
HCH1g0914 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
HCH1g0914 248 Pfam Lytic transglycolase 61 146 IPR009009 -
HCH1g0914 248 FunFam Expansin 16 152 - -
HCH1g0914 248 PANTHER EXPANSIN-A15 4 248 IPR002963 GO:0009664(InterPro)
HCH1g0914 248 SMART dpbb_1 61 146 IPR007112 -
HCH1g0914 248 SUPERFAMILY Barwin-like endoglucanases 9 174 IPR036908 -
HCH1g0914 248 Gene3D - 156 248 IPR036749 -
HCH1g0914 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0595 HCH-Chr13:4547515 HCH1g0914 HCH-Chr1:57522355 6.90E-110 dispersed
HCH1g0451 HCH-Chr1:53033480 HCH1g0914 HCH-Chr1:57522355 3.80E-103 dispersed
HCH1g0914 HCH-Chr1:57522355 HCH9g0677 HCH-Chr9:4503623 7.70E-101 dispersed
HCH4g0813 HCH-Chr4:5240094 HCH1g0914 HCH-Chr1:57522355 1.30E-95 transposed
HCH1g0914 HCH-Chr1:57522355 HCH13g0724 HCH-Chr13:6105552 6.70E-105 wgd
HCH1g0914 HCH-Chr1:57522355 HCH3g0070 HCH-Chr3:402889 4.70E-90 wgd
HCH1g0914 HCH-Chr1:57522355 HCH4g0896 HCH-Chr4:5762602 4.90E-124 wgd
HCH1g0914 HCH-Chr1:57522355 HCH8g1292 HCH-Chr8:48034614 7.10E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0914 - - - 0.0