Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0935 ATGATCATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAGTTGTTGGAGAAAAAAGAAGAGCAACAACAGCCTTGTTCCATCTCCGCAAACAACGGAACAAGTTCTTCTAATAATCCTCAATCTTCTTCCACAGCCGTCATTCATCCAAATCTTCAATCTTCTTCTTCCACCATTGATCATAATTCTTCTCTCCCTAAGAAGCCTCCTCCCAAGAGAGCTACCACCAAAGACCGCCACACCAAAGTTGACGGCCGCGGCCGCCGTATTCGCATGCCGGCCCTCTGCGCCGCTAGGGTTTTTCAACTCACGAGAGAACTCGGTCACAAATCCGATGGAGAAACCATCGAATGGCTTCTCCAACAAGCCGAACCTGCCGTCATCGCTGCCACCGGTACCGGTACAATTCCCGCTAACTTCACGTCGCTTAATATCTCTTTACGGAGCTCTGGATCCAGCATCTCGGCTCCGTCGCACTTACGGAGCAGTTATTTTAGTCCCAGTCAGTTAGCTGCCGCTGCGCATTTGAGGTCGGCGAGGGCTGATATGTGGGAGAGGAATATGGTGGATGAGTCCCAACAAAGGGTGCTTTTTCCAGCCGATAATTCTTCTGCATTCTTGAATTTTAGTTCTGCTAATTATGTAAACCTAAACGCTTTTGCTCAAGCCAAGCACGAGCTTCGTGATCAGGCCGGTCTCGATGTCGCAGACTCCGATGCCGGTGGTGCAAAGAAACGAAGGTCGGAGCAATCGGAATCGCCAGAGAATCACGTTGGAAACTACTTAGTACAATCAAGCACCGGGTCAGTTCCGGCCAGTCAAAGTACTCCGGCTCCGGCAACATTTTGGATGGTGTCAAATCCTAATAACCAAGCGATGGGAGGTACTAATAGTAACAATTCCACTGAACCCTTGTGGACGTTTCCATCGATAAGCAATACAAGTATGTTTAGGGCACCGGTTGGTGGCGGCGGGTTTCATTTTATGAATCTTCCACCTTCAATGGCTCTTTTGCCGCCAAGCGGTCAGCAATTGGGTCCGGGAATTGGCGGTGGTGGAGGCGGGGGTGGTTCGGGGACCGACAGCCACTTGGGCATGCTGGCAGCTCTCAATGCTTATAGAACGATGCCAGGATTATCAGTTTCTGAATCTCCAACAAGAGGAGGAGCAAATAATAATGTTCATCATCAGGGTCGAAACGATGGCCATGATTCGAGTTCTAATCGTGATCAATCATAG 1248 49.2 MIMDGENGIRRPNFPLQLLEKKEEQQQPCSISANNGTSSSNNPQSSSTAVIHPNLQSSSSTIDHNSSLPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSISAPSHLRSSYFSPSQLAAAAHLRSARADMWERNMVDESQQRVLFPADNSSAFLNFSSANYVNLNAFAQAKHELRDQAGLDVADSDAGGAKKRRSEQSESPENHVGNYLVQSSTGSVPASQSTPAPATFWMVSNPNNQAMGGTNSNNSTEPLWTFPSISNTSMFRAPVGGGGFHFMNLPPSMALLPPSGQQLGPGIGGGGGGGGSGTDSHLGMLAALNAYRTMPGLSVSESPTRGGANNNVHHQGRNDGHDSSSNRDQS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57626817 57628064 + evm.model.ptg000006l.272 HCH1g0935 538954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0935 415 MobiDBLite consensus disorder prediction 235 280 - -
HCH1g0935 415 Pfam TCP family transcription factor 78 191 IPR017887 -
HCH1g0935 415 MobiDBLite consensus disorder prediction 1 92 - -
HCH1g0935 415 ProSiteProfiles TCP domain profile. 79 133 IPR017887 -
HCH1g0935 415 MobiDBLite consensus disorder prediction 257 280 - -
HCH1g0935 415 MobiDBLite consensus disorder prediction 381 399 - -
HCH1g0935 415 MobiDBLite consensus disorder prediction 381 415 - -
HCH1g0935 415 MobiDBLite consensus disorder prediction 235 256 - -
HCH1g0935 415 MobiDBLite consensus disorder prediction 400 415 - -
HCH1g0935 415 MobiDBLite consensus disorder prediction 23 67 - -
HCH1g0935 415 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 40 394 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0935 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0935 HCH-Chr1:57626817 HCH1g1177 HCH-Chr1:59074558 3.40E-37 dispersed
HCH1g0935 HCH-Chr1:57626817 HCH3g0046 HCH-Chr3:291674 5.80E-45 wgd
HCH1g0935 HCH-Chr1:57626817 HCH8g1306 HCH-Chr8:48103877 4.70E-79 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0544 . 28 238 TCP Transcription Factor Family AT5G23280 57.8 2.0e-56 216.1
HCH10g1153 . 22 252 TCP Transcription Factor Family AT5G23280 54.5 2.4e-54 209.1
HCH13g1174 . 64 332 TCP Transcription Factor Family AT2G45680 55.0 3.5e-62 235.7
HCH1g0935 . 76 180 TCP Transcription Factor Family AT3G47620 85.0 1.9e-42 170.6
HCH3g0046 . 52 161 TCP Transcription Factor Family AT3G47620 79.3 1.9e-39 160.6
HCH1g1177 . 127 209 TCP Transcription Factor Family AT3G47620 89.2 2.6e-36 150.2
HCH9g0048 . 1 307 TCP Transcription Factor Family AT3G27010 56.5 1.9e-67 253.1
HCH1g0544 . 25 236 TCP Transcription Factor Family AT5G08330 60.9 3.3e-56 215.3
HCH10g1153 . 1 251 TCP Transcription Factor Family AT5G08330 51.9 2.1e-55 212.6
HCH8g1238 . 33 227 TCP Transcription Factor Family AT5G60970 51.3 2.5e-44 176.4
HCH9g0307 . 31 131 TCP Transcription Factor Family AT3G02150 75.7 2.0e-38 156.8
HCH6g0648 . 21 224 TCP Transcription Factor Family AT2G31070 51.4 1.7e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33101 PF03634 TCP 1.00E-37 No_clan HCH TF