Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0935 ATGATCATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAGTTGTTGGAGAAAAAAGAAGAGCAACAACAGCCTTGTTCCATCTCCGCAAACAACGGAACAAGTTCTTCTAATAATCCTCAATCTTCTTCCACAGCCGTCATTCATCCAAATCTTCAATCTTCTTCTTCCACCATTGATCATAATTCTTCTCTCCCTAAGAAGCCTCCTCCCAAGAGAGCTACCACCAAAGACCGCCACACCAAAGTTGACGGCCGCGGCCGCCGTATTCGCATGCCGGCCCTCTGCGCCGCTAGGGTTTTTCAACTCACGAGAGAACTCGGTCACAAATCCGATGGAGAAACCATCGAATGGCTTCTCCAACAAGCCGAACCTGCCGTCATCGCTGCCACCGGTACCGGTACAATTCCCGCTAACTTCACGTCGCTTAATATCTCTTTACGGAGCTCTGGATCCAGCATCTCGGCTCCGTCGCACTTACGGAGCAGTTATTTTAGTCCCAGTCAGTTAGCTGCCGCTGCGCATTTGAGGTCGGCGAGGGCTGATATGTGGGAGAGGAATATGGTGGATGAGTCCCAACAAAGGGTGCTTTTTCCAGCCGATAATTCTTCTGCATTCTTGAATTTTAGTTCTGCTAATTATGTAAACCTAAACGCTTTTGCTCAAGCCAAGCACGAGCTTCGTGATCAGGCCGGTCTCGATGTCGCAGACTCCGATGCCGGTGGTGCAAAGAAACGAAGGTCGGAGCAATCGGAATCGCCAGAGAATCACGTTGGAAACTACTTAGTACAATCAAGCACCGGGTCAGTTCCGGCCAGTCAAAGTACTCCGGCTCCGGCAACATTTTGGATGGTGTCAAATCCTAATAACCAAGCGATGGGAGGTACTAATAGTAACAATTCCACTGAACCCTTGTGGACGTTTCCATCGATAAGCAATACAAGTATGTTTAGGGCACCGGTTGGTGGCGGCGGGTTTCATTTTATGAATCTTCCACCTTCAATGGCTCTTTTGCCGCCAAGCGGTCAGCAATTGGGTCCGGGAATTGGCGGTGGTGGAGGCGGGGGTGGTTCGGGGACCGACAGCCACTTGGGCATGCTGGCAGCTCTCAATGCTTATAGAACGATGCCAGGATTATCAGTTTCTGAATCTCCAACAAGAGGAGGAGCAAATAATAATGTTCATCATCAGGGTCGAAACGATGGCCATGATTCGAGTTCTAATCGTGATCAATCATAG 1248 49.2 MIMDGENGIRRPNFPLQLLEKKEEQQQPCSISANNGTSSSNNPQSSSTAVIHPNLQSSSSTIDHNSSLPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSISAPSHLRSSYFSPSQLAAAAHLRSARADMWERNMVDESQQRVLFPADNSSAFLNFSSANYVNLNAFAQAKHELRDQAGLDVADSDAGGAKKRRSEQSESPENHVGNYLVQSSTGSVPASQSTPAPATFWMVSNPNNQAMGGTNSNNSTEPLWTFPSISNTSMFRAPVGGGGFHFMNLPPSMALLPPSGQQLGPGIGGGGGGGGSGTDSHLGMLAALNAYRTMPGLSVSESPTRGGANNNVHHQGRNDGHDSSSNRDQS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57626817 57628064 + evm.model.ptg000006l.272 HCH1g0935 538954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0935 415 MobiDBLite consensus disorder prediction 235 280 - -
HCH1g0935 415 Pfam TCP family transcription factor 78 191 IPR017887 -
HCH1g0935 415 MobiDBLite consensus disorder prediction 1 92 - -
HCH1g0935 415 ProSiteProfiles TCP domain profile. 79 133 IPR017887 -
HCH1g0935 415 MobiDBLite consensus disorder prediction 257 280 - -
HCH1g0935 415 MobiDBLite consensus disorder prediction 381 399 - -
HCH1g0935 415 MobiDBLite consensus disorder prediction 381 415 - -
HCH1g0935 415 MobiDBLite consensus disorder prediction 235 256 - -
HCH1g0935 415 MobiDBLite consensus disorder prediction 400 415 - -
HCH1g0935 415 MobiDBLite consensus disorder prediction 23 67 - -
HCH1g0935 415 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 40 394 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0935 HCH-Chr1:57626817 HCH1g1177 HCH-Chr1:59074558 3.40E-37 dispersed
HCH1g0935 HCH-Chr1:57626817 HCH3g0046 HCH-Chr3:291674 5.80E-45 wgd
HCH1g0935 HCH-Chr1:57626817 HCH8g1306 HCH-Chr8:48103877 4.70E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33101 PF03634 TCP 1.00E-37 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0935 - - - 0.0