Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0942 ATGACAAGCAATGGGATGGCCTTTTTCCCTGCAAATTTCATGCTTCAAACTTCCCATGAAGATCATGATCATCATCACTCTTCTCCTCCTTCTCTCAATCCACTTTTACCTTCTTGTACACCTCAAGATTTCCATGGAGTTGCATCATTTCTTGGGAAAAGATCTATGTCATTTTCTGGGGCAGAAATGGTGGAAGAAGGAAATAATGGAGAAGATGATTTTTCTGATGATGGGTCACAGGCAGGGGAGAAAAAGAGAAGACTTAATATGGAGCAAGTTAAGACACTTGAGAAAAATTTTGAATTGGGAAATAAGCTTGAGCCTGAGAGGAAAATGCAGCTTGCTAGAGCTCTTGGTTTACAACCAAGACAGATTGCTATTTGGTTTCAAAACAGAAGAGCCAGGTGGAAGACTAAGCAACTTGAAAAAGACTATGATCTTCTTAAAAGACAATTTGAAGCTATCAAATCAGATAATGATGCTCTCAAATCCCAGAACCAGAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAACCAACTGAATCAATCAACCTCAATAAAGAAACAGAGGGATCATGCAGTAACAGAAGTGAAAACAGCTCTGATAATATAAAGTTAGACATCTCAAGAACTCCTGCCATTGATAGCCCTCATCATCAACAGCAGCAGCAGCAGCAGCAGATGTCTAGGCCTCTATTTCCTACAACCTTATTAAGGCCTCCAGCATTGGCTCAGCTCTTTCAAACATCATCAAGATCTGAAGCAAATCAATCTCAATGCCAAAAAATGGAAAATAATGGAACCCCTCATCATCACAATATGACTGCTAAAGAAGAAACAAGCAGCTTGTCCAACATGTTCTGTGGCATGGATGATCACTCTGGCTTTTGGCCATGGTTGGAGCAACAACATTTCAATTGA 927 39.81 MTSNGMAFFPANFMLQTSHEDHDHHHSSPPSLNPLLPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDDFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNDALKSQNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHHQQQQQQQQMSRPLFPTTLLRPPALAQLFQTSSRSEANQSQCQKMENNGTPHHHNMTAKEETSSLSNMFCGMDDHSGFWPWLEQQHFN 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57685743 57687335 + evm.model.ptg000006l.265 HCH1g0942 538961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0942 308 MobiDBLite consensus disorder prediction 187 205 - -
HCH1g0942 308 Gene3D - 76 145 - -
HCH1g0942 308 FunFam Homeobox-leucine zipper protein ATHB-13 76 143 - -
HCH1g0942 308 SUPERFAMILY Homeodomain-like 73 141 IPR009057 -
HCH1g0942 308 SMART HOX_1 82 143 IPR001356 GO:0003677(InterPro)
HCH1g0942 308 Coils Coil 131 179 - -
HCH1g0942 308 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 62 294 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
HCH1g0942 308 MobiDBLite consensus disorder prediction 180 205 - -
HCH1g0942 308 CDD homeodomain 84 140 IPR001356 GO:0003677(InterPro)
HCH1g0942 308 Pfam Homeobox associated leucine zipper 139 179 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH1g0942 308 Pfam Homeodomain 84 137 IPR001356 GO:0003677(InterPro)
HCH1g0942 308 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677(InterPro)
HCH1g0942 308 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677(InterPro)
HCH1g0942 308 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH1g0942 308 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677(InterPro)
HCH1g0942 308 MobiDBLite consensus disorder prediction 64 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0942 HCH-Chr1:57685743 HCH3g0280 HCH-Chr3:1777841 2.90E-25 dispersed
HCH1g0942 HCH-Chr1:57685743 HCH13g0750 HCH-Chr13:6633281 4.80E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33103 PF00046 Homeodomain 3.10E-15 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0942 K09338 - csv:101221595 483.411