Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0942 | ATGACAAGCAATGGGATGGCCTTTTTCCCTGCAAATTTCATGCTTCAAACTTCCCATGAAGATCATGATCATCATCACTCTTCTCCTCCTTCTCTCAATCCACTTTTACCTTCTTGTACACCTCAAGATTTCCATGGAGTTGCATCATTTCTTGGGAAAAGATCTATGTCATTTTCTGGGGCAGAAATGGTGGAAGAAGGAAATAATGGAGAAGATGATTTTTCTGATGATGGGTCACAGGCAGGGGAGAAAAAGAGAAGACTTAATATGGAGCAAGTTAAGACACTTGAGAAAAATTTTGAATTGGGAAATAAGCTTGAGCCTGAGAGGAAAATGCAGCTTGCTAGAGCTCTTGGTTTACAACCAAGACAGATTGCTATTTGGTTTCAAAACAGAAGAGCCAGGTGGAAGACTAAGCAACTTGAAAAAGACTATGATCTTCTTAAAAGACAATTTGAAGCTATCAAATCAGATAATGATGCTCTCAAATCCCAGAACCAGAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAACCAACTGAATCAATCAACCTCAATAAAGAAACAGAGGGATCATGCAGTAACAGAAGTGAAAACAGCTCTGATAATATAAAGTTAGACATCTCAAGAACTCCTGCCATTGATAGCCCTCATCATCAACAGCAGCAGCAGCAGCAGCAGATGTCTAGGCCTCTATTTCCTACAACCTTATTAAGGCCTCCAGCATTGGCTCAGCTCTTTCAAACATCATCAAGATCTGAAGCAAATCAATCTCAATGCCAAAAAATGGAAAATAATGGAACCCCTCATCATCACAATATGACTGCTAAAGAAGAAACAAGCAGCTTGTCCAACATGTTCTGTGGCATGGATGATCACTCTGGCTTTTGGCCATGGTTGGAGCAACAACATTTCAATTGA | 927 | 39.81 | MTSNGMAFFPANFMLQTSHEDHDHHHSSPPSLNPLLPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDDFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNDALKSQNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHHQQQQQQQQMSRPLFPTTLLRPPALAQLFQTSSRSEANQSQCQKMENNGTPHHHNMTAKEETSSLSNMFCGMDDHSGFWPWLEQQHFN | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 57685743 | 57687335 | + | evm.model.ptg000006l.265 | HCH1g0942 | 538961 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0942 | 308 | MobiDBLite | consensus disorder prediction | 187 | 205 | - | - | |
HCH1g0942 | 308 | Gene3D | - | 76 | 145 | - | - | |
HCH1g0942 | 308 | FunFam | Homeobox-leucine zipper protein ATHB-13 | 76 | 143 | - | - | |
HCH1g0942 | 308 | SUPERFAMILY | Homeodomain-like | 73 | 141 | IPR009057 | - | |
HCH1g0942 | 308 | SMART | HOX_1 | 82 | 143 | IPR001356 | GO:0003677(InterPro) | |
HCH1g0942 | 308 | Coils | Coil | 131 | 179 | - | - | |
HCH1g0942 | 308 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 62 | 294 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
HCH1g0942 | 308 | MobiDBLite | consensus disorder prediction | 180 | 205 | - | - | |
HCH1g0942 | 308 | CDD | homeodomain | 84 | 140 | IPR001356 | GO:0003677(InterPro) | |
HCH1g0942 | 308 | Pfam | Homeobox associated leucine zipper | 139 | 179 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH1g0942 | 308 | Pfam | Homeodomain | 84 | 137 | IPR001356 | GO:0003677(InterPro) | |
HCH1g0942 | 308 | PRINTS | Lambda-repressor HTH signature | 110 | 119 | IPR000047 | GO:0003677(InterPro) | |
HCH1g0942 | 308 | PRINTS | Lambda-repressor HTH signature | 119 | 135 | IPR000047 | GO:0003677(InterPro) | |
HCH1g0942 | 308 | ProSitePatterns | 'Homeobox' domain signature. | 114 | 137 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
HCH1g0942 | 308 | ProSiteProfiles | 'Homeobox' domain profile. | 79 | 139 | IPR001356 | GO:0003677(InterPro) | |
HCH1g0942 | 308 | MobiDBLite | consensus disorder prediction | 64 | 84 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0942 | HCH-Chr1:57685743 | HCH3g0280 | HCH-Chr3:1777841 | 2.90E-25 | dispersed | |
HCH1g0942 | HCH-Chr1:57685743 | HCH13g0750 | HCH-Chr13:6633281 | 4.80E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33103 | PF00046 | Homeodomain | 3.10E-15 | CL0123 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH1g0942 | K09338 | - | csv:101221595 | 483.411 |