Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0952 | ATGAACAAAAATATTATCTTTGGATTACTAGTTACCTTGTCATTGATGGCAACAGCTTATGCTGGCATTGTGGAGTTTGATGATTACTGGAAGGCAAGAGAAGAGGAAGCCCAGAAAGCAGCACTTGACGCCTTCGATCCCAATCCCGAGGATGTAACCGATAATCTCAATGCTCAAGTTGGCAAGGTAATAAAAGGAAACAACAGTACAAGAAGGAATTTGAGGAAATACAACGGCCAATGCAGGGCTACTAATCCCATCGATAGGTGCTGGAGATGCGACCCCAACTGGTCCAAAAACCGCAAGAAGCTTGCAGATTGCGTCCTTGGTTTCGGCCGAAAGACCGTCGGTGGCAAGTATGGTCCCTACTATGTCGTCACCGATGGGTCCGACAACGACATGGCAAACCCTAAACCCGGAACCCTACGTCACGCTGTGATCCAGAAAGGACCACTCTGGATCATCTTCTCACATAGCATGGCCATTAGACTAAATCAAGAGCTTATCATGACTAGTGATAAGACAATTGATGGAAGAGGAGTCGTAGTTCGGATTGCTTTCGGGGCTGGTATCACTCTTCAATTCATCAAGAACGTGATCATTCATGGCATTCGTATCCATAATATCGTCTCGGGCAACGGCGGGATAATTAGAGATTCAGTTGATCATTTAGGTTTAAGAACACAAAGCGATGGCGACGGAATTTCCATTTTCGGATCCTCGAATATATGGATTGATCACGTTTCCATGTCTAAATGTCAAGATGGACTTATTGATGCTATTATGGGATCTACTGCAATCACCATCTCCAATTGTCATTTCACTCACCACAATGAGGTGATGTTGTTCGGAGCGAGCGATAGCTACTCGGCTGATACAATAATGCAAGTGACGGTAGCATTCAATCACTTCGGACAGGGATTAGTACAAAGAATGCCGAGGTGCAGATGGGGATTCTTCCATGTGGTAAACAATGACTACACACATTGGCTAATGTATGCCATAGGAGGTAGCCAGCATCCTACAATCGTGAGTCAAGGAAATCGCTTCATTGCTCCTCCTAACGTTTTCGCCAAAGAGGTAACAAAGAGGGAGTATTCACCTCAGAATGTGTGGCAAAGCTGGACATGGAGATCAGAAGGAGACTTGATGATGAATGGAGCTTTCTTTGTAAGGTCTGGTGATCAAAGGAAGAGAAGGCCATTCTCAAGGTTGGATATGATATCATATAAGCCCGGGACTTTTGTCACAAGAATGACACGATTCGCCGGCGCTCTCGATTGCTACTCCGGCCGCCCGTGCTAG | 1305 | 45.52 | MNKNIIFGLLVTLSLMATAYAGIVEFDDYWKAREEEAQKAALDAFDPNPEDVTDNLNAQVGKVIKGNNSTRRNLRKYNGQCRATNPIDRCWRCDPNWSKNRKKLADCVLGFGRKTVGGKYGPYYVVTDGSDNDMANPKPGTLRHAVIQKGPLWIIFSHSMAIRLNQELIMTSDKTIDGRGVVVRIAFGAGITLQFIKNVIIHGIRIHNIVSGNGGIIRDSVDHLGLRTQSDGDGISIFGSSNIWIDHVSMSKCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYSADTIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNVFAKEVTKREYSPQNVWQSWTWRSEGDLMMNGAFFVRSGDQRKRRPFSRLDMISYKPGTFVTRMTRFAGALDCYSGRPC | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 57750682 | 57752390 | - | evm.model.ptg000006l.255 | HCH1g0952 | 538971 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0952 | 434 | Pfam | Pectate lyase | 186 | 350 | IPR002022 | - | |
HCH1g0952 | 434 | Gene3D | - | 84 | 427 | IPR012334 | - | |
HCH1g0952 | 434 | SUPERFAMILY | Pectin lyase-like | 85 | 425 | IPR011050 | - | |
HCH1g0952 | 434 | PANTHER | PECTATE LYASE 18-RELATED | 24 | 431 | IPR045032 | GO:0030570(InterPro) | |
HCH1g0952 | 434 | Pfam | Pectate lyase, N terminus | 23 | 74 | IPR007524 | GO:0030570(InterPro) | |
HCH1g0952 | 434 | SMART | amb_all | 159 | 356 | IPR002022 | - | |
HCH1g0952 | 434 | PRINTS | Pollen allergen Amb family signature | 311 | 330 | IPR018082 | - | |
HCH1g0952 | 434 | PRINTS | Pollen allergen Amb family signature | 167 | 183 | IPR018082 | - | |
HCH1g0952 | 434 | PRINTS | Pollen allergen Amb family signature | 131 | 156 | IPR018082 | - | |
HCH1g0952 | 434 | PRINTS | Pollen allergen Amb family signature | 107 | 124 | IPR018082 | - | |
HCH1g0952 | 434 | PRINTS | Pollen allergen Amb family signature | 405 | 428 | IPR018082 | - | |
HCH1g0952 | 434 | PRINTS | Pollen allergen Amb family signature | 375 | 399 | IPR018082 | - | |
HCH1g0952 | 434 | PRINTS | Pollen allergen Amb family signature | 231 | 252 | IPR018082 | - | |
HCH1g0952 | 434 | PRINTS | Pollen allergen Amb family signature | 333 | 352 | IPR018082 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0952 | HCH-Chr1:57750682 | HCH4g0072 | HCH-Chr4:395562 | 9.80E-136 | dispersed | |
HCH1g0952 | HCH-Chr1:57750682 | HCH3g0276 | HCH-Chr3:1761408 | 9.40E-179 | wgd | |
HCH1g0952 | HCH-Chr1:57750682 | HCH3g0032 | HCH-Chr3:232911 | 4.10E-65 | wgd | |
HCH1g0952 | HCH-Chr1:57750682 | HCH9g0207 | HCH-Chr9:1220532 | 1.10E-187 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH1g0952 | K01728 | - | csv:101206497 | 738.799 |