Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0952 ATGAACAAAAATATTATCTTTGGATTACTAGTTACCTTGTCATTGATGGCAACAGCTTATGCTGGCATTGTGGAGTTTGATGATTACTGGAAGGCAAGAGAAGAGGAAGCCCAGAAAGCAGCACTTGACGCCTTCGATCCCAATCCCGAGGATGTAACCGATAATCTCAATGCTCAAGTTGGCAAGGTAATAAAAGGAAACAACAGTACAAGAAGGAATTTGAGGAAATACAACGGCCAATGCAGGGCTACTAATCCCATCGATAGGTGCTGGAGATGCGACCCCAACTGGTCCAAAAACCGCAAGAAGCTTGCAGATTGCGTCCTTGGTTTCGGCCGAAAGACCGTCGGTGGCAAGTATGGTCCCTACTATGTCGTCACCGATGGGTCCGACAACGACATGGCAAACCCTAAACCCGGAACCCTACGTCACGCTGTGATCCAGAAAGGACCACTCTGGATCATCTTCTCACATAGCATGGCCATTAGACTAAATCAAGAGCTTATCATGACTAGTGATAAGACAATTGATGGAAGAGGAGTCGTAGTTCGGATTGCTTTCGGGGCTGGTATCACTCTTCAATTCATCAAGAACGTGATCATTCATGGCATTCGTATCCATAATATCGTCTCGGGCAACGGCGGGATAATTAGAGATTCAGTTGATCATTTAGGTTTAAGAACACAAAGCGATGGCGACGGAATTTCCATTTTCGGATCCTCGAATATATGGATTGATCACGTTTCCATGTCTAAATGTCAAGATGGACTTATTGATGCTATTATGGGATCTACTGCAATCACCATCTCCAATTGTCATTTCACTCACCACAATGAGGTGATGTTGTTCGGAGCGAGCGATAGCTACTCGGCTGATACAATAATGCAAGTGACGGTAGCATTCAATCACTTCGGACAGGGATTAGTACAAAGAATGCCGAGGTGCAGATGGGGATTCTTCCATGTGGTAAACAATGACTACACACATTGGCTAATGTATGCCATAGGAGGTAGCCAGCATCCTACAATCGTGAGTCAAGGAAATCGCTTCATTGCTCCTCCTAACGTTTTCGCCAAAGAGGTAACAAAGAGGGAGTATTCACCTCAGAATGTGTGGCAAAGCTGGACATGGAGATCAGAAGGAGACTTGATGATGAATGGAGCTTTCTTTGTAAGGTCTGGTGATCAAAGGAAGAGAAGGCCATTCTCAAGGTTGGATATGATATCATATAAGCCCGGGACTTTTGTCACAAGAATGACACGATTCGCCGGCGCTCTCGATTGCTACTCCGGCCGCCCGTGCTAG 1305 45.52 MNKNIIFGLLVTLSLMATAYAGIVEFDDYWKAREEEAQKAALDAFDPNPEDVTDNLNAQVGKVIKGNNSTRRNLRKYNGQCRATNPIDRCWRCDPNWSKNRKKLADCVLGFGRKTVGGKYGPYYVVTDGSDNDMANPKPGTLRHAVIQKGPLWIIFSHSMAIRLNQELIMTSDKTIDGRGVVVRIAFGAGITLQFIKNVIIHGIRIHNIVSGNGGIIRDSVDHLGLRTQSDGDGISIFGSSNIWIDHVSMSKCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYSADTIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNVFAKEVTKREYSPQNVWQSWTWRSEGDLMMNGAFFVRSGDQRKRRPFSRLDMISYKPGTFVTRMTRFAGALDCYSGRPC 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57750682 57752390 - evm.model.ptg000006l.255 HCH1g0952 538971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0952 434 Pfam Pectate lyase 186 350 IPR002022 -
HCH1g0952 434 Gene3D - 84 427 IPR012334 -
HCH1g0952 434 SUPERFAMILY Pectin lyase-like 85 425 IPR011050 -
HCH1g0952 434 PANTHER PECTATE LYASE 18-RELATED 24 431 IPR045032 GO:0030570(InterPro)
HCH1g0952 434 Pfam Pectate lyase, N terminus 23 74 IPR007524 GO:0030570(InterPro)
HCH1g0952 434 SMART amb_all 159 356 IPR002022 -
HCH1g0952 434 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
HCH1g0952 434 PRINTS Pollen allergen Amb family signature 167 183 IPR018082 -
HCH1g0952 434 PRINTS Pollen allergen Amb family signature 131 156 IPR018082 -
HCH1g0952 434 PRINTS Pollen allergen Amb family signature 107 124 IPR018082 -
HCH1g0952 434 PRINTS Pollen allergen Amb family signature 405 428 IPR018082 -
HCH1g0952 434 PRINTS Pollen allergen Amb family signature 375 399 IPR018082 -
HCH1g0952 434 PRINTS Pollen allergen Amb family signature 231 252 IPR018082 -
HCH1g0952 434 PRINTS Pollen allergen Amb family signature 333 352 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0952 HCH-Chr1:57750682 HCH4g0072 HCH-Chr4:395562 9.80E-136 dispersed
HCH1g0952 HCH-Chr1:57750682 HCH3g0276 HCH-Chr3:1761408 9.40E-179 wgd
HCH1g0952 HCH-Chr1:57750682 HCH3g0032 HCH-Chr3:232911 4.10E-65 wgd
HCH1g0952 HCH-Chr1:57750682 HCH9g0207 HCH-Chr9:1220532 1.10E-187 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0952 K01728 - csv:101206497 738.799