Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0954 ATGGAAGCAATTGTTGAAGATGGGAAAGTTGAGTCTGTGAAAGTGAGTGAATTAAAGGGGAAGAAGCAGAAGAAGAACAAAGATAAGGAACAAGTTGACACTGTTGAAGAGGAGACTGGTTGTTGGATTGCTTTGAGAATTTTTGGCAGTTGCATTTCTTCAAGATCTAAAGTTGATAGTTCTATCAGTGGGACCAGTATTAACTATGCTGAAAGTAAGTCGACAGCTGATACAAGTAGAGATCAACCAACACCTCGAGAGACATCTTCTACCACCACAAGTATTAGTAATGCAGAGAGTAGTTCATCCACTTCCAAACTAGAAGACGAACTTAAAATTTCTCCTCATCTACGGAATTTTTCATTCAATGATCTTAAGATGGCAACAAGGAACTTTAGACCTGAGAGTCTTCTCGGTGAGGGTGGTTTTGGTTGTGTTTTTAAGGGTTGGGTTGAAGAAAATGGAACTGCTCCTGTGAAACCTGGCACAGGACTTACTGTTGCTGTCAAAACCCTCAACCATGATGGTCTTCAAGGCCACAAAGAGTGGATGGCTGAAGTGAACTTTCTTAGTGATCTTCTTCATCCTAACTTGGTTAAGCTTATCGGTTACTGCAATGAAGACGATCAACGATTACTTGTATATGAGTTCATGCCTCGAGGAAGCTTGGAGAATCACCTTTTTCGGAGATCTCTACCTCTTCCATGGTCGATTAGGATGAAAATTGCTCTAGGTGCTGCCAAGGGTCTTTCTTTTCTTCACGAGGAAGCAAAAAGGCCTGTGATATATCGTGATTTTAAAACATCCAATATCCTATTAGATGCAGACTACAATGCCAAGCTTTCTGACTTTGGACTTGCAAAAGATGGTCCTGACGGAGATAAAACGCATGTCTCTACTCGTGTGATGGGAACATATGGTTATGCCGCTCCGGAATACGTAATGACTGGACATCTTACATCAAGGAGTGATGTATACAGTTTTGGTGTGGTGCTTCTTGAAATGTTAACAGGCAGGAGATCTATGGATAAAAACCGTCCTAATGGGGAACATAATCTTGTCGAATGGGCACGACCATACCTAGGAGAGAAAAAGAGATTCTACCGTTTGATAGATCCAAGGCTCGAAGGTCATTTCTCAATAAAGGGTGCCCAAAAAGCAGTACAATTGGCTGCCCAATGCCTAAGCCGAGATCAAAAGATCAGACCCTTAATGAGTGAGGTTGTTGAAGCCTTGAAGCCTCTGCCAAACCTCAAGGACATGGCAAGTTCATCTTATTATTTTCAGACAATGCAAGGTGACCGCATTCGATCCAGCCCCATTTCTAGAAATGGCCATCATCCAGCTGCTGGATCGGTTCTGAAGAACGGACACCAACTGCGGAGCCTTTCGGTAGCAAATGGTTCTCATGCTTCTCCATTCCATCATCAGCAACCCCATCCATCACCAAAACCCAATGTCAATGTCAAAATCTAA 1476 42.55 MEAIVEDGKVESVKVSELKGKKQKKNKDKEQVDTVEEETGCWIALRIFGSCISSRSKVDSSISGTSINYAESKSTADTSRDQPTPRETSSTTTSISNAESSSSTSKLEDELKISPHLRNFSFNDLKMATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLSDLLHPNLVKLIGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLSFLHEEAKRPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPDGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAVQLAAQCLSRDQKIRPLMSEVVEALKPLPNLKDMASSSYYFQTMQGDRIRSSPISRNGHHPAAGSVLKNGHQLRSLSVANGSHASPFHHQQPHPSPKPNVNVKI 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57764722 57767723 - evm.model.ptg000006l.253 HCH1g0954 538973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0954 491 ProSitePatterns Protein kinases ATP-binding region signature. 138 170 IPR017441 GO:0005524(InterPro)
HCH1g0954 491 MobiDBLite consensus disorder prediction 16 35 - -
HCH1g0954 491 ProSiteProfiles Protein kinase domain profile. 132 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0954 491 MobiDBLite consensus disorder prediction 469 484 - -
HCH1g0954 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0954 491 MobiDBLite consensus disorder prediction 71 109 - -
HCH1g0954 491 Gene3D Transferase(Phosphotransferase) domain 1 218 432 - -
HCH1g0954 491 MobiDBLite consensus disorder prediction 71 104 - -
HCH1g0954 491 Coils Coil 18 38 - -
HCH1g0954 491 MobiDBLite consensus disorder prediction 469 491 - -
HCH1g0954 491 Pfam Protein tyrosine and serine/threonine kinase 136 412 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0954 491 SUPERFAMILY Protein kinase-like (PK-like) 108 412 IPR011009 -
HCH1g0954 491 Gene3D Phosphorylase Kinase; domain 1 116 217 - -
HCH1g0954 491 CDD STKc_IRAK 138 415 - -
HCH1g0954 491 FunFam Probable serine/threonine-protein kinase PBL8 218 432 - -
HCH1g0954 491 PANTHER OS01G0588500 PROTEIN-RELATED 98 416 IPR050823 -
HCH1g0954 491 FunFam Serine/threonine-protein kinase BIK1 99 217 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0954 HCH-Chr1:57764722 HCH8g0857 HCH-Chr8:45028191 3.80E-136 dispersed
HCH2g1467 HCH-Chr2:56204791 HCH1g0954 HCH-Chr1:57764722 3.30E-114 transposed
HCH3g0633 HCH-Chr3:4410582 HCH1g0954 HCH-Chr1:57764722 3.90E-79 transposed
HCH1g0954 HCH-Chr1:57764722 HCH13g0758 HCH-Chr13:6799006 3.40E-201 wgd
HCH1g0954 HCH-Chr1:57764722 HCH4g0851 HCH-Chr4:5442881 3.90E-104 wgd
HCH1g0954 HCH-Chr1:57764722 HCH9g0201 HCH-Chr9:1180602 4.30E-204 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81295 PF07714 PK_Tyr_Ser-Thr 5.20E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0954 - - - 0.0