Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0960 ATGAGTCGCAAAAGAGACAAGCCATACCCTTCCCGCCACGTTCCCACCTCCATAGCAAAGCGGCGCCGCCCTCCTCCGGCAGAAGATGAAGTCGACAAACCTATATCAAAACCCACGCCGCCGCCTGCACTCGTCGTTCTTAACCTTCCTTCACACTGTTCAGTTCTCGACTTAAAATCCCGTTTTGAAATCTACGGATCCATTTCCCGCATCCGTATTGACCGTGATTGCGTTGGTTACATCACCTATCGTTCTCAAGACTCTGCCAATTCTGCTTTAGCTGCTGCCCTTGACCCCTCTTTTGGAATCACTATTGATTCCAAAAAGGTAGAGGTAGTATGGGTGACTGATCCTCAAGTGCAATGGAGGCAAGGGATTAATGTTGGTGTTAACAAGAATAATGAATTATCTTCAAAGCTTTTGAGAGGAGAAGTACCTTTGAGTAGACATGGAAGAAGCAATAAACTTGCTTCAACAATTGTGAACCCCAGAAACAGAAACAGTGATTCTATTTCTTCCCCTCCAATTTCAGGGTTGGATTTGGATGTGCCTTCCAGGGGCAGGGAAGTTGTTGCTTACGATGATATTCTTTAA 594 45.62 MSRKRDKPYPSRHVPTSIAKRRRPPPAEDEVDKPISKPTPPPALVVLNLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRSQDSANSALAAALDPSFGITIDSKKVEVVWVTDPQVQWRQGINVGVNKNNELSSKLLRGEVPLSRHGRSNKLASTIVNPRNRNSDSISSPPISGLDLDVPSRGREVVAYDDIL 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57808866 57809744 + evm.model.ptg000006l.247 HCH1g0960 538979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0960 197 SMART rrm1_1 43 113 IPR000504 GO:0003723(InterPro)
HCH1g0960 197 Pfam RNA recognition motif 44 95 IPR000504 GO:0003723(InterPro)
HCH1g0960 197 MobiDBLite consensus disorder prediction 154 180 - -
HCH1g0960 197 MobiDBLite consensus disorder prediction 154 175 - -
HCH1g0960 197 CDD RRM_SF 44 85 - -
HCH1g0960 197 MobiDBLite consensus disorder prediction 1 40 - -
HCH1g0960 197 Gene3D - 18 154 IPR012677 -
HCH1g0960 197 SUPERFAMILY RNA-binding domain, RBD 23 127 IPR035979 GO:0003676(InterPro)
HCH1g0960 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 117 IPR000504 GO:0003723(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0960 - - - 0.0