Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0960 | ATGAGTCGCAAAAGAGACAAGCCATACCCTTCCCGCCACGTTCCCACCTCCATAGCAAAGCGGCGCCGCCCTCCTCCGGCAGAAGATGAAGTCGACAAACCTATATCAAAACCCACGCCGCCGCCTGCACTCGTCGTTCTTAACCTTCCTTCACACTGTTCAGTTCTCGACTTAAAATCCCGTTTTGAAATCTACGGATCCATTTCCCGCATCCGTATTGACCGTGATTGCGTTGGTTACATCACCTATCGTTCTCAAGACTCTGCCAATTCTGCTTTAGCTGCTGCCCTTGACCCCTCTTTTGGAATCACTATTGATTCCAAAAAGGTAGAGGTAGTATGGGTGACTGATCCTCAAGTGCAATGGAGGCAAGGGATTAATGTTGGTGTTAACAAGAATAATGAATTATCTTCAAAGCTTTTGAGAGGAGAAGTACCTTTGAGTAGACATGGAAGAAGCAATAAACTTGCTTCAACAATTGTGAACCCCAGAAACAGAAACAGTGATTCTATTTCTTCCCCTCCAATTTCAGGGTTGGATTTGGATGTGCCTTCCAGGGGCAGGGAAGTTGTTGCTTACGATGATATTCTTTAA | 594 | 45.62 | MSRKRDKPYPSRHVPTSIAKRRRPPPAEDEVDKPISKPTPPPALVVLNLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRSQDSANSALAAALDPSFGITIDSKKVEVVWVTDPQVQWRQGINVGVNKNNELSSKLLRGEVPLSRHGRSNKLASTIVNPRNRNSDSISSPPISGLDLDVPSRGREVVAYDDIL | 197 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 57808866 | 57809744 | + | evm.model.ptg000006l.247 | HCH1g0960 | 538979 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0960 | 197 | SMART | rrm1_1 | 43 | 113 | IPR000504 | GO:0003723(InterPro) | |
HCH1g0960 | 197 | Pfam | RNA recognition motif | 44 | 95 | IPR000504 | GO:0003723(InterPro) | |
HCH1g0960 | 197 | MobiDBLite | consensus disorder prediction | 154 | 180 | - | - | |
HCH1g0960 | 197 | MobiDBLite | consensus disorder prediction | 154 | 175 | - | - | |
HCH1g0960 | 197 | CDD | RRM_SF | 44 | 85 | - | - | |
HCH1g0960 | 197 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
HCH1g0960 | 197 | Gene3D | - | 18 | 154 | IPR012677 | - | |
HCH1g0960 | 197 | SUPERFAMILY | RNA-binding domain, RBD | 23 | 127 | IPR035979 | GO:0003676(InterPro) | |
HCH1g0960 | 197 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 42 | 117 | IPR000504 | GO:0003723(InterPro) |
Pathway information
