Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0970 ATGCCTCTTCCATCTTCTTCTTCTTCTTCTCCACTTACCCTTTCCACCATTTTCATTTTCACTTCCTTCTTTCCTCTCTTTTCAATCTCCACATCTCCATGTCCACCTTTCAGTTCCAAACTTGTGTTTCCATTTTCTTCCATTCCTGGCTATGGACATCCTTCTTTCCAAATAACTTGCTCTCTTCCTCACTCCATTATCTCCATAAATAACTCATCTTTCTCTCTTTTAAGCTACAATATAACTTCCACTTCTCTCATTCTTTCCCCTCATCCACTCCATCAAACTTCTACAGCTAAAGATGCAAACCATTCTTGTTTTTCTTCACATTTCTCTTCCATTCCTCCCCGTGAGATTAATCTTTCTGGCTCACCGTTTCGAATATCTGATATTTCATGCTCTCGTCTCTCTTTACTCCAGCCATGTTCCCCTCCAAATCTCCCAAATTGCAGCCATTGTCCATGGGAGTGTAATCTTATCAAAAAACCAATCGATCTTCTTCATGGATGTGGTTTTGGACACCAACCCTTTTCAGAACAAGGTTGTCAGAATGATGTTTTGGAATTTCTAGACAATATTCTGAGATTTGGGCTTGAGATTGAGTGGGATTCAAATCAAGATCCTTACTTTATGAAATGTAATGATTGTCAAGCTCAAAATGGAATCTGTGGCTTCAATTCCACAACCCCTGATAAGCATTTTATTTGTTATCGTTCTCAAACTCAGTATTCATCATCTCCATGGAATATTCATCATGGTTTTCCAAATAGAATTGCTATTTTATCAGCAGTCTTTGCATTATCATCTCTGTTATTGATTCTTGCGGTAGTTATGGCTATTTTCAGGTCTAGATGGCTTAGATCTCTGGCCATGGAAGTAGACCCCACTGCTCAATTCCTCAGCCGTCACCGTTCTCCTAATCTGCTCCCACCAGTTTTCCCTTATGAAGAATTGGAATCTTCAACCAACTGCTTCGACCCAAAGCGAAAACTCGGCGATGGCGGCTTCGGGTCGGTTTATCTCGGTCAGCTTAACGACGGTCGATTCGTCGCCGTTAAGTATCTCCACACCGCTGCCGCCGCCTCCTCGGGCCGTGCTTTCTTCACAAAGTCATTTTGTAATGAAATTTTGATACTTTCTTCAATTGATCATCCAAATCTAGTGAAGCTTCATGGTTATTGTAGTGACCCAAGAGGGCTAATTTTAGTCTATGATTATGTCCCAAATGGCACACTTGCATACCATATTCATGGTCCTAAAAGTTCTTGCTGTCGGAAAGGAACACTGACGTGGCAAATCAGGATTGATATTGCTTTGCAAATTGCTATGGCAATGGAGTATTTGCATTTCTCAGTCGTGCCTCCAATTGTTCATAGAGACATTACTTCTTCAAATATTTTCGTTGAGAGGGATATGAGGATTAAAGTTGGAGACTTTGGGTTGTCTAGGTTGTTGGTTTTTTCCGATACGACATCGTCTTCGTCCGGTTATGTTTGCACCGGACCGCAAGGTACGCCGGGTTATTTAGACCCGGAGTATCATCGGTCGTTCCGATTAACAGAAAAGAGTGATGTTTATAGCTTTGGAGTAGTGTTATTGGAGTTGATATCAGGTTTAAAAGCAGTGGATCAAAGTAGGGAGAGAAGGGAAATGGCATTGGCTGATTTAGTAGTATCCAAGATCCAAATGGGTCAGCTCCATCAGGTTGTGGATTCGGGTTTGGGTATCGATGGGGAGGTTATCGACGGCGTCGAAGCGGTGGCGGAATTGGCATTCCGGTGTGTGGCGGCGGATAAGGATGATAGGCCTGATGCTAAGGAGGTTGTGGAGGAGCTCCGGCGAATCAGGAACCGTACACGTGGAGTTAAATCATTGGTTTTGAATGTGGGTGGTGGTGATGTGGCGAAAAGTTGA 1914 42.74 MPLPSSSSSSPLTLSTIFIFTSFFPLFSISTSPCPPFSSKLVFPFSSIPGYGHPSFQITCSLPHSIISINNSSFSLLSYNITSTSLILSPHPLHQTSTAKDANHSCFSSHFSSIPPREINLSGSPFRISDISCSRLSLLQPCSPPNLPNCSHCPWECNLIKKPIDLLHGCGFGHQPFSEQGCQNDVLEFLDNILRFGLEIEWDSNQDPYFMKCNDCQAQNGICGFNSTTPDKHFICYRSQTQYSSSPWNIHHGFPNRIAILSAVFALSSLLLILAVVMAIFRSRWLRSLAMEVDPTAQFLSRHRSPNLLPPVFPYEELESSTNCFDPKRKLGDGGFGSVYLGQLNDGRFVAVKYLHTAAAASSGRAFFTKSFCNEILILSSIDHPNLVKLHGYCSDPRGLILVYDYVPNGTLAYHIHGPKSSCCRKGTLTWQIRIDIALQIAMAMEYLHFSVVPPIVHRDITSSNIFVERDMRIKVGDFGLSRLLVFSDTTSSSSGYVCTGPQGTPGYLDPEYHRSFRLTEKSDVYSFGVVLLELISGLKAVDQSRERREMALADLVVSKIQMGQLHQVVDSGLGIDGEVIDGVEAVAELAFRCVAADKDDRPDAKEVVEELRRIRNRTRGVKSLVLNVGGGDVAKS 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57875108 57877021 + evm.model.ptg000006l.237 HCH1g0970 538989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0970 637 ProSiteProfiles Protein kinase domain profile. 325 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0970 637 Gene3D Transferase(Phosphotransferase) domain 1 407 626 - -
HCH1g0970 637 ProSitePatterns Tyrosine protein kinases specific active-site signature. 456 468 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0970 637 Pfam Wall-associated receptor kinase C-terminal 185 239 IPR032872 -
HCH1g0970 637 Gene3D Phosphorylase Kinase; domain 1 299 406 - -
HCH1g0970 637 CDD STKc_IRAK 331 615 - -
HCH1g0970 637 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524(InterPro)
HCH1g0970 637 FunFam Putative serine/threonine-protein kinase At1g18390 family 301 406 - -
HCH1g0970 637 SUPERFAMILY Protein kinase-like (PK-like) 311 618 IPR011009 -
HCH1g0970 637 Pfam Protein kinase domain 327 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0970 637 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 32 620 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0970 HCH-Chr1:57875108 HCH8g1155 HCH-Chr8:47169559 4.10E-74 dispersed
HCH1g0970 HCH-Chr1:57875108 HCH9g0381 HCH-Chr9:2423616 2.90E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81296 PF00069 Pkinase 7.30E-43 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0970 - - - 0.0