Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0973 ATGGCAGAGGAAGATTTGAGGCTTCTTGGCACATGGTCTAGTCCTTTTGCTCAACGAGTCAGAATTGCCTTCAATATTAAGTCTGTCAAATACGATTTTCTTGAGGAAATATTAGCATCCAAAAGCCAACTCCTTCTTGAATCAAACCCCGTTTACAAGAAAATCCCTGTTCTTATTCATAACCACAAACCCATTGCTGAATCATTGATCATTGTGGAATATATTGATGAGGTTTGGACTTCTGGTCCCTCCATCCTTCCCTCTGATCCTTATGATCGTGCCATTGCTCGCTTTTGGGCTGCTTACGTAGATGATAAGTTGTTCTCATCCATGAAAGGGCTTTTTGGTGCTCAAGAAGAGGAAGAGAAAAATGCATTTGCCAATCAAGTTTTTGAAGGGATTGCATTATTGGAGGAAGCTTTTTTGAAGCTAAGTCAAGGGAAGGCTTACTTTGGTGGAGACCAAATTGGATTTCTTGATATTTCTTTTGGATCCATGTTGAGTTGGCTTATTGTGATTGGAAAATACATTGGATTCAAATTGATTGATGAAACAAAAACTCCTGCCTTGGCCAAATGGGCTCAAGAATTCTCTGCAAATGGTGCTGTCAAAGATGTTATGCCAAATATTGAAAGGCTTTTTGAGTTTGGCAAGATTATTCAGGCCGAGTTGAGAGGAGAGACTTCCAAGTGA 693 39.83 MAEEDLRLLGTWSSPFAQRVRIAFNIKSVKYDFLEEILASKSQLLLESNPVYKKIPVLIHNHKPIAESLIIVEYIDEVWTSGPSILPSDPYDRAIARFWAAYVDDKLFSSMKGLFGAQEEEEKNAFANQVFEGIALLEEAFLKLSQGKAYFGGDQIGFLDISFGSMLSWLIVIGKYIGFKLIDETKTPALAKWAQEFSANGAVKDVMPNIERLFEFGKIIQAELRGETSK 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57884611 57885940 - evm.model.ptg000006l.234 HCH1g0973 538992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0973 230 SUPERFAMILY GST C-terminal domain-like 77 220 IPR036282 -
HCH1g0973 230 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 216 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
HCH1g0973 230 SUPERFAMILY Thioredoxin-like 5 108 IPR036249 -
HCH1g0973 230 CDD GST_C_Tau 90 216 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
HCH1g0973 230 CDD GST_N_Tau 6 79 - -
HCH1g0973 230 Gene3D - 86 228 - -
HCH1g0973 230 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 216 IPR010987 -
HCH1g0973 230 SFLD Main.3: Omega- and Tau-like 2 225 IPR045073 -
HCH1g0973 230 SFLD Glutathione Transferase (cytosolic) 2 225 IPR040079 -
HCH1g0973 230 FunFam Glutathione S-transferase U9 86 226 - -
HCH1g0973 230 FunFam Glutathione S-transferase GSTU6 1 86 - -
HCH1g0973 230 Pfam Glutathione S-transferase, C-terminal domain 122 195 - -
HCH1g0973 230 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
HCH1g0973 230 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
HCH1g0973 230 Gene3D Glutaredoxin 1 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0973 HCH-Chr1:57884611 HCH7g1515 HCH-Chr7:47693578 8.20E-49 dispersed
HCH1g0972 HCH-Chr1:57882099 HCH1g0973 HCH-Chr1:57884611 6.60E-99 tandem
HCH1g0973 HCH-Chr1:57884611 HCH1g0974 HCH-Chr1:57887803 9.00E-88 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0973 K00799 - vvi:100245065 290.426