Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0974 ATGGCTGAAGAAGATTTGAGGCTTATAGGTTCATGGCCTAGTCCCTTTGTTCAAAGAGTCAGAATTGCTTTGAATCTCAAATCTGTCTATTACGATTTTCTTGACCAGCCCATAATTGAACCCAAAAGCCAACTTCTTCTTGAATCAAACCCCGTTTACAAGAAAATCCCTGTTCTTCTTCATAACCACAAACCCATCATTGAATCACTGATTATTGTTCAATATATTGATGAGGTTTGGACTTCGTCTCCCTCCATCCTTCCTTCTCATCCTTATGATCGTGCCGTTGCTCGCTTTTGGGGTGCTTATGTTGATGACAAGATTTTCGCACCCATTCTTGAGCTTGTAAGTACTGAAGAAGAGGAAAAGAAAAAAACACTTATCGATCAATTGGCAGAAGGGATTGCAGTAATGGAGGAAACGTTTTCGAAGCTGAGCAAAGGAAAGGTTTTCTTCGGTGGAGACCAGATTAAGTTCGTTGATATTGCGTTTGGATCCGTACTGGGTTGGATCCAAGTGACTGAAAAATTCAATGGATTGAAATTGATCGACGAAAAGAAAACTCCTGGATTGGCAAAATGGGCTGAAAACTTCTCTGCAGATAGTGCAGTGAAAAATGTTACATGGGATATTGAAAAGCTTGTAGAGTTTGCCAAAATACTCCAGGCCAAGATCAGAGGTCAACTTTCCAAGTAA 696 40.23 MAEEDLRLIGSWPSPFVQRVRIALNLKSVYYDFLDQPIIEPKSQLLLESNPVYKKIPVLLHNHKPIIESLIIVQYIDEVWTSSPSILPSHPYDRAVARFWGAYVDDKIFAPILELVSTEEEEKKKTLIDQLAEGIAVMEETFSKLSKGKVFFGGDQIKFVDIAFGSVLGWIQVTEKFNGLKLIDEKKTPGLAKWAENFSADSAVKNVTWDIEKLVEFAKILQAKIRGQLSK 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57887803 57888958 - evm.model.ptg000006l.233 HCH1g0974 538993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0974 231 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 84 IPR004045 -
HCH1g0974 231 Gene3D - 87 228 - -
HCH1g0974 231 CDD GST_C_Tau 91 221 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
HCH1g0974 231 SUPERFAMILY GST C-terminal domain-like 86 220 IPR036282 -
HCH1g0974 231 Gene3D Glutaredoxin 1 86 - -
HCH1g0974 231 Pfam Glutathione S-transferase, N-terminal domain 9 78 IPR004045 -
HCH1g0974 231 CDD GST_N_Tau 6 80 - -
HCH1g0974 231 SFLD Main.3: Omega- and Tau-like 2 226 IPR045073 -
HCH1g0974 231 SFLD Main (cytGST) 2 226 - -
HCH1g0974 231 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 221 IPR010987 -
HCH1g0974 231 Pfam Glutathione S-transferase, C-terminal domain 116 200 IPR004046 -
HCH1g0974 231 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 219 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
HCH1g0974 231 FunFam Glutathione S-transferase U9 87 227 - -
HCH1g0974 231 FunFam Glutathione S-transferase GSTU6 1 87 - -
HCH1g0974 231 SUPERFAMILY Thioredoxin-like 5 108 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0974 K00799 - - mdm:103451886 287.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0972 HCH-Chr1:57882099 HCH1g0974 HCH-Chr1:57887803 3.10E-88 dispersed
HCH1g0974 HCH-Chr1:57887803 HCH9g0726 HCH-Chr9:4844178 2.20E-41 dispersed
HCH1g0973 HCH-Chr1:57884611 HCH1g0974 HCH-Chr1:57887803 9.00E-88 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g1003 . 1 209 Glutathione S-transferase Gene Family AT4G02520 59.0 1.4e-63 239.6
HCH4g1005 . 1 209 Glutathione S-transferase Gene Family AT4G02520 58.5 9.3e-63 236.9
HCH4g1004 . 1 209 Glutathione S-transferase Gene Family AT4G02520 56.6 6.7e-61 230.7
HCH4g1005 . 1 210 Glutathione S-transferase Gene Family AT2G02930 59.2 2.9e-64 241.9
HCH4g1003 . 1 210 Glutathione S-transferase Gene Family AT2G02930 59.2 1.4e-63 239.6
HCH4g1004 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.7 3.2e-63 238.4
HCH4g1003 . 5 214 Glutathione S-transferase Gene Family AT1G02950 55.5 1.0e-63 240.4
HCH4g1004 . 5 206 Glutathione S-transferase Gene Family AT1G02950 57.1 2.9e-63 238.8
HCH4g1005 . 5 206 Glutathione S-transferase Gene Family AT1G02950 57.1 1.9e-62 236.1
HCH4g1003 . 5 213 Glutathione S-transferase Gene Family AT1G02940 50.5 2.5e-54 209.1
HCH4g1005 . 5 206 Glutathione S-transferase Gene Family AT1G02940 52.7 3.6e-53 205.3
HCH4g1004 . 5 208 Glutathione S-transferase Gene Family AT1G02940 51.2 4.7e-53 204.9
HCH4g1003 . 1 210 Glutathione S-transferase Gene Family AT1G02930 57.6 4.1e-63 238.0
HCH4g1005 . 1 210 Glutathione S-transferase Gene Family AT1G02930 56.2 2.7e-62 235.3
HCH4g1004 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.2 1.7e-61 232.6
HCH4g1003 . 1 210 Glutathione S-transferase Gene Family AT1G02920 57.6 2.8e-64 241.9
HCH4g1004 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.7 6.3e-64 240.7
HCH4g1005 . 1 210 Glutathione S-transferase Gene Family AT1G02920 57.1 1.4e-63 239.6
HCH4g1003 . 1 215 Glutathione S-transferase Gene Family AT2G47730 61.1 2.6e-70 262.3
HCH4g1005 . 1 214 Glutathione S-transferase Gene Family AT2G47730 60.0 4.5e-67 251.5
HCH4g1004 . 1 214 Glutathione S-transferase Gene Family AT2G47730 59.5 1.0e-66 250.4
HCH4g1002 . 1 213 Glutathione S-transferase Gene Family AT3G62760 60.6 1.2e-78 289.7
HCH4g1003 . 19 215 Glutathione S-transferase Gene Family AT1G49860 51.0 2.4e-49 192.6
HCH7g1515 . 3 206 Glutathione S-transferase Gene Family AT2G29450 50.5 3.3e-50 195.3
HCH9g0729 . 3 222 Glutathione S-transferase Gene Family AT3G09270 54.5 9.2e-69 256.9
HCH9g0727 . 3 217 Glutathione S-transferase Gene Family AT3G09270 54.9 1.6e-65 246.1
HCH9g0728 . 2 216 Glutathione S-transferase Gene Family AT3G09270 54.4 2.1e-65 245.7
HCH9g0726 . 3 213 Glutathione S-transferase Gene Family AT3G09270 54.0 9.8e-63 236.9
HCH7g1512 . 3 213 Glutathione S-transferase Gene Family AT3G09270 50.2 6.2e-57 217.6
HCH1g0972 . 3 219 Glutathione S-transferase Gene Family AT1G69930 56.7 1.4e-67 253.1
HCH1g0973 . 3 219 Glutathione S-transferase Gene Family AT1G69930 51.6 6.6e-62 234.2
HCH1g0974 . 3 220 Glutathione S-transferase Gene Family AT1G69930 51.8 9.6e-61 230.3
HCH1g0972 . 1 218 Glutathione S-transferase Gene Family AT1G27130 52.5 2.6e-63 238.8
HCH1g0974 . 1 219 Glutathione S-transferase Gene Family AT1G27130 52.5 8.4e-62 233.8
HCH1g0972 . 1 218 Glutathione S-transferase Gene Family AT1G27140 50.5 3.0e-57 218.8
HCH1g0972 . 4 216 Glutathione S-transferase Gene Family AT1G59670 56.3 4.0e-67 251.5
HCH1g0973 . 4 216 Glutathione S-transferase Gene Family AT1G59670 52.1 1.4e-59 226.5
HCH1g0974 . 4 217 Glutathione S-transferase Gene Family AT1G59670 50.2 2.4e-59 225.7
HCH1g0972 . 4 226 Glutathione S-transferase Gene Family AT1G59700 53.8 1.5e-66 249.6
HCH1g0974 . 3 231 Glutathione S-transferase Gene Family AT1G59700 50.9 5.4e-64 241.1
HCH1g0972 . 1 226 Glutathione S-transferase Gene Family AT1G10370 63.4 6.2e-81 297.4
HCH1g0973 . 1 220 Glutathione S-transferase Gene Family AT1G10370 57.5 5.8e-71 264.2
HCH1g0974 . 1 219 Glutathione S-transferase Gene Family AT1G10370 58.6 2.5e-66 248.8
HCH1g0972 . 1 226 Glutathione S-transferase Gene Family AT1G10360 59.9 1.7e-75 279.3
HCH1g0973 . 1 218 Glutathione S-transferase Gene Family AT1G10360 56.6 7.9e-68 253.8
HCH1g0974 . 1 224 Glutathione S-transferase Gene Family AT1G10360 54.7 2.4e-64 242.3
HCH6g0589 . 1 216 Glutathione S-transferase Gene Family AT1G78380 72.2 6.4e-91 330.5
HCH6g0654 . 1 216 Glutathione S-transferase Gene Family AT1G78380 72.7 6.4e-91 330.5
HCH6g0590 . 1 215 Glutathione S-transferase Gene Family AT1G78380 66.5 8.1e-86 313.5
HCH6g0652 . 1 215 Glutathione S-transferase Gene Family AT1G78380 66.5 1.1e-85 313.2
HCH6g0656 . 1 219 Glutathione S-transferase Gene Family AT1G78380 67.6 1.2e-81 299.7
HCH6g0584 . 1 219 Glutathione S-transferase Gene Family AT1G78380 66.7 8.6e-80 293.5
HCH6g0653 . 1 216 Glutathione S-transferase Gene Family AT1G78380 62.5 1.5e-79 292.7
HCH10g1077 . 4 217 Glutathione S-transferase Gene Family AT1G78380 54.4 5.6e-63 237.7
HCH6g0654 . 7 214 Glutathione S-transferase Gene Family AT1G78370 63.5 3.6e-78 288.1
HCH6g0589 . 7 214 Glutathione S-transferase Gene Family AT1G78370 63.0 1.4e-77 286.2
HCH6g0584 . 7 220 Glutathione S-transferase Gene Family AT1G78370 61.7 1.3e-75 279.6
HCH6g0656 . 7 220 Glutathione S-transferase Gene Family AT1G78370 61.7 2.8e-75 278.5
HCH6g0590 . 1 216 Glutathione S-transferase Gene Family AT1G78370 59.7 6.3e-75 277.3
HCH6g0652 . 1 216 Glutathione S-transferase Gene Family AT1G78370 59.7 8.3e-75 276.9
HCH6g0653 . 7 214 Glutathione S-transferase Gene Family AT1G78370 59.1 4.5e-73 271.2
HCH10g1077 . 7 215 Glutathione S-transferase Gene Family AT1G78370 54.8 7.3e-63 237.3
HCH6g0654 . 1 216 Glutathione S-transferase Gene Family AT1G78340 61.1 2.6e-76 282.0
HCH6g0590 . 1 214 Glutathione S-transferase Gene Family AT1G78340 60.3 2.2e-75 278.9
HCH6g0652 . 1 214 Glutathione S-transferase Gene Family AT1G78340 60.3 2.2e-75 278.9
HCH6g0589 . 1 214 Glutathione S-transferase Gene Family AT1G78340 60.7 6.4e-75 277.3
HCH6g0653 . 1 216 Glutathione S-transferase Gene Family AT1G78340 57.4 5.1e-72 267.7
HCH6g0656 . 1 218 Glutathione S-transferase Gene Family AT1G78340 59.6 2.5e-71 265.4
HCH6g0584 . 1 218 Glutathione S-transferase Gene Family AT1G78340 59.2 8.1e-70 260.4
HCH10g1077 . 4 215 Glutathione S-transferase Gene Family AT1G78340 53.1 5.8e-60 227.6
HCH6g0584 . 1 218 Glutathione S-transferase Gene Family AT1G78320 52.8 4.5e-56 214.5
HCH6g0590 . 1 205 Glutathione S-transferase Gene Family AT1G78320 50.2 2.9e-55 211.8
HCH6g0652 . 1 205 Glutathione S-transferase Gene Family AT1G78320 50.2 2.9e-55 211.8
HCH6g0654 . 1 215 Glutathione S-transferase Gene Family AT1G78320 50.2 2.9e-55 211.8
HCH6g0656 . 1 218 Glutathione S-transferase Gene Family AT1G78320 52.3 6.5e-55 210.7
HCH6g0589 . 1 209 Glutathione S-transferase Gene Family AT1G78320 50.7 2.5e-54 208.8
HCH6g0653 . 1 205 Glutathione S-transferase Gene Family AT1G78320 50.2 3.6e-53 204.9
HCH6g0654 . 1 218 Glutathione S-transferase Gene Family AT1G17180 66.5 9.0e-85 310.1
HCH6g0589 . 1 218 Glutathione S-transferase Gene Family AT1G17180 65.6 2.0e-84 308.9
HCH6g0656 . 1 223 Glutathione S-transferase Gene Family AT1G17180 64.1 1.9e-79 292.4
HCH6g0653 . 1 219 Glutathione S-transferase Gene Family AT1G17180 60.3 2.5e-79 292.0
HCH6g0584 . 1 223 Glutathione S-transferase Gene Family AT1G17180 63.7 1.3e-78 289.7
HCH6g0590 . 1 215 Glutathione S-transferase Gene Family AT1G17180 59.5 4.0e-77 284.6
HCH6g0652 . 1 215 Glutathione S-transferase Gene Family AT1G17180 59.5 5.3e-77 284.3
HCH10g1077 . 4 220 Glutathione S-transferase Gene Family AT1G17180 52.8 3.3e-63 238.4
HCH3g0865 . 1 167 Glutathione S-transferase Gene Family AT1G17180 53.3 1.1e-47 186.8
HCH6g0654 . 4 217 Glutathione S-transferase Gene Family AT1G17190 60.7 1.4e-74 276.2
HCH6g0589 . 4 217 Glutathione S-transferase Gene Family AT1G17190 59.8 3.2e-74 275.0
HCH6g0656 . 2 219 Glutathione S-transferase Gene Family AT1G17190 58.3 1.4e-69 259.6
HCH6g0584 . 2 221 Glutathione S-transferase Gene Family AT1G17190 57.7 6.9e-69 257.3
HCH6g0652 . 1 215 Glutathione S-transferase Gene Family AT1G17190 53.7 9.0e-69 256.9
HCH6g0590 . 1 215 Glutathione S-transferase Gene Family AT1G17190 53.7 1.5e-68 256.1
HCH6g0653 . 2 217 Glutathione S-transferase Gene Family AT1G17190 53.2 9.9e-68 253.4
HCH6g0656 . 3 221 Glutathione S-transferase Gene Family AT3G43800 56.3 5.4e-69 257.7
HCH6g0654 . 4 215 Glutathione S-transferase Gene Family AT3G43800 57.4 9.3e-69 256.9
HCH6g0589 . 4 212 Glutathione S-transferase Gene Family AT3G43800 57.7 4.6e-68 254.6
HCH6g0653 . 2 212 Glutathione S-transferase Gene Family AT3G43800 55.8 1.8e-67 252.7
HCH6g0584 . 3 220 Glutathione S-transferase Gene Family AT3G43800 54.8 1.6e-65 246.1
HCH6g0590 . 3 214 Glutathione S-transferase Gene Family AT3G43800 54.6 1.6e-65 246.1
HCH6g0652 . 3 214 Glutathione S-transferase Gene Family AT3G43800 54.6 1.6e-65 246.1
HCH6g0654 . 4 218 Glutathione S-transferase Gene Family AT1G53680 58.5 2.4e-69 258.8
HCH6g0589 . 4 218 Glutathione S-transferase Gene Family AT1G53680 58.5 4.1e-69 258.1
HCH6g0656 . 2 218 Glutathione S-transferase Gene Family AT1G53680 56.0 5.6e-66 247.7
HCH6g0584 . 5 223 Glutathione S-transferase Gene Family AT1G53680 55.0 6.1e-65 244.2
HCH10g1077 . 1 220 Glutathione S-transferase Gene Family AT1G53680 53.3 1.1e-61 233.4
HCH6g0590 . 3 214 Glutathione S-transferase Gene Family AT1G53680 51.4 2.7e-60 228.8
HCH6g0652 . 3 214 Glutathione S-transferase Gene Family AT1G53680 51.4 3.5e-60 228.4
HCH3g0865 . 2 164 Glutathione S-transferase Gene Family AT1G53680 51.5 2.3e-43 172.6
HCH2g0292 . 52 222 Glutathione S-transferase Gene Family AT2G02390 63.2 3.3e-59 224.9
HCH7g1544 . 59 225 Glutathione S-transferase Gene Family AT2G02390 53.3 8.2e-50 193.7
HCH2g0292 . 8 220 Glutathione S-transferase Gene Family AT2G02380 63.4 1.6e-76 282.7
HCH7g1544 . 16 224 Glutathione S-transferase Gene Family AT2G02380 55.5 2.0e-63 239.2
HCH6g1211 . 1 244 Glutathione S-transferase Gene Family AT5G41210 68.9 8.7e-97 350.1
HCH6g1211 . 1 244 Glutathione S-transferase Gene Family AT5G41240 66.0 2.6e-91 333.2
HCH11g0235 . 13 229 Glutathione S-transferase Gene Family AT5G02780 67.6 4.8e-84 307.8
HCH1g0509 . 80 299 Glutathione S-transferase Gene Family AT5G02780 68.0 1.4e-83 306.2
HCH11g0236 . 13 229 Glutathione S-transferase Gene Family AT5G02780 67.1 1.2e-82 303.1
HCH1g0509 . 71 300 Glutathione S-transferase Gene Family AT3G55040 69.3 1.8e-88 322.8
HCH11g0236 . 3 230 Glutathione S-transferase Gene Family AT3G55040 59.0 7.0e-77 284.3
HCH11g0235 . 3 229 Glutathione S-transferase Gene Family AT3G55040 56.6 1.5e-74 276.6
HCH11g0236 . 7 232 Glutathione S-transferase Gene Family AT5G02790 66.5 1.9e-88 322.4
HCH11g0235 . 7 232 Glutathione S-transferase Gene Family AT5G02790 67.0 1.2e-87 319.7
HCH1g0509 . 69 299 Glutathione S-transferase Gene Family AT5G02790 64.2 1.2e-84 309.7
HCH1g0491 . 1 211 Glutathione S-transferase Gene Family AT1G19570 69.3 1.6e-86 315.8
HCH1g0490 . 1 211 Glutathione S-transferase Gene Family AT1G19570 67.0 1.8e-82 302.4
HCH9g0425 . 62 269 Glutathione S-transferase Gene Family AT1G19570 59.8 5.8e-73 270.8
HCH1g0491 . 1 212 Glutathione S-transferase Gene Family AT1G75270 74.6 2.3e-93 338.6
HCH1g0490 . 1 212 Glutathione S-transferase Gene Family AT1G75270 72.8 5.2e-90 327.4
HCH9g0425 . 62 269 Glutathione S-transferase Gene Family AT1G75270 60.3 2.9e-72 268.5
HCH9g0425 . 51 271 Glutathione S-transferase Gene Family AT5G16710 75.1 1.4e-100 362.8
HCH1g0490 . 3 210 Glutathione S-transferase Gene Family AT5G16710 62.0 1.7e-74 276.2
HCH1g0491 . 3 210 Glutathione S-transferase Gene Family AT5G16710 60.6 4.1e-73 271.6
HCH12g0842 . 1 266 Glutathione S-transferase Gene Family AT1G77290 68.0 3.1e-108 388.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015124 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 2 0 0 0 3 0 1 1 0 1 0 2 2 15