Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0979 ATGAGTGGATGGGATAGGGTTAGGTCATCGACTTCGAGATTTGGACGTGGAAATTCAGCAATGCACGAAAGGGTTCCGTCTTCGAATACGGTTCGGCTTGGGCGAGTCCAGCCCCAGGCTCCGGGTCATCGCACGATCTTTTGCAATGATCGCGAGGCCAATTTCATCGTCAAATTTAAGGGGAATTCAGTTTCAACCACTAAGTACAACTTCTTCACTTTTTTTCCAAAAGGGCTGTTTGAACAGTTCAGGCGTGTGGCTAATCTATACTTTCTTACAATCTCAATCTTGTCCACCACACCTATCAGTCCTGTGCATCCAATTACAAATGTGGTCCCATTAAGTCTGGTTCTACTTGTCTCTCTCATTAAAGAAGCATTTGAGGATTGGAAACGATTCCAGAATGATATGGCAATTAATAATAATCTTGTAGATGTTCTGCAAGATCAAAAGTGGGAGAGTATTCCCTGGAAAAAGTTGCAGGTTGGCGATATTGTTAGGGTTCGGCAAGATGGATTTTTTCCTGCAGATCTTCTTTTCCTTGCCAGTACAAATCCAGATGGTGTCTGCTATATTGAGACTGCTAATTTGGATGGGGAGACAAATTTGAAAATTAGAAAGGCTCTGGAAAAGACCTGGGATTACCTCACTCCAGAGAAGGCATCTGAATTTAAAGGTGAATTACAATGTGAGCAACCAAATAATTCGCTGTACACTTTCACTGGCAACGCTATTATCCAGAAGCAAACATTACCTCTCAGCCCTAACCAGCTTCTATTGCGAGGATGCAGCCTCAGGAATACTGAGTATATTGTTGGGGCTGTTATTTTTACAGGTCATGAAACAAAGGTTATGATGAATGCAATGAACGTACCCTCTAAAAGAAGTACTTTGGAGAAAAAACTTGACAAACTTATACTCACACTTTTTGGCACTCTCTTCATCATGTGTCTTATTGGAGCTATTGGCAGTGGCGTGTTTGTAAACCAGAAGTATTACTACCTAGCTCTTGATAAGGGAGGGGAAAACCAATTTAATCCTAGCAACCGATTCTTGGTTGTCATTCTGACCATGTTTACCCTAATTACGCTATACTCAACAATCATTCCTATTTCTCTTTATGTTTCCATTGAGATGGTTAAATTCATTCAGTCAACCCAATATATTAACAAGGATTTAAATATGTACCATGCTGAAAGCAACACCCCTGCATTGGCTAGGACTTCCAATTTGAATGAAGAACTTGGACAGGTAGAATACATCTTTTCAGATAAAACTGGTACTCTTACCAGGAATTTGATGGAGTTTTTTAAGTGTTCAATTGGAGGAGAGGTTTATGGAACCGGCGTCACCGAAATAGAGAGGGGAATTGCTCAGCAGAATGGTATGAAAGTTGAAGAGGTGCATAAATCAGATAACGCAGTACAAGAGAAGGGATTTAATTTTGATGATGCTAGGCTTATGCGAGGAGCATGGAGAAACGAGTCCAATTCTGATCTTTGTAAGGAATTTTTCAGATGCCTTGCTATTTGCCACACAGTACTTCCTGAGGGCGATGAATCCCCTGAAAAAATCACATATCAAGCAGCATCACCTGATGAGGCTGCCTTGGTAACTGCTGCTAAAAACTTTGGCTTCTTCTTTTACAGACGCACACCTACTACTATATATGTTCGTGAATCTCATGTTGAGAAGATGGGTAAAATCCAGGATGTTTCTTATGAAATTCTCAATGTACTTGAGTTCAATAGTACAAGGAAGCGTCAGTCTGTGGTGTGTCGTTATGCAGATGGTAGGCTTGTCTTATATTGCAAGGGTGCTGATACTGTAATATATGAGAGAATGGCTGGTGGAAATGATGAGCTAAAGAATGTGACTAGGAACCACTTGGAGAAATTTGGATCATCTGGTTTGAGAACCCTATGCCTTGCTTATAGAGATTTGCATCCTGACATGTATGAAAGCTGGAATGAAAAATTCATTCAGGCTAAGTCTTCACTACGAGATCGTGAAAAGAAATTGGATGAGGTTGCAGAACTTATAGAGAGAGAACTTATTTTGATTGGCTGTACTGCTATAGAAGACAAGCTTCAAGAAGGAGTACCAAACTGTATACAGACGCTTTCTAAAGCTGGCATCAAGATTTGGATGCTAACAGGAGACAAGATGGAAACTGCTATTAATATAGCTTATGCATGCAATTTAATAAACAATGACATGAAACAGTTTATTATCAGTTCAGAAACAGATGCAATTAGAGAAGTTGAAAACAGGGGTGACCAAGTAGAAATTGCACGTTTTACTAGAGAAGAAGTAAAAAGGGAACTGAAGAAATGCCTTGAGGAAGCACAACAGTGTTTGCAATCTGTTTCTCCACCAAAATTAGCACTTGTGATTGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTTTGCGAGTTACTCTACTAAATTTGAGCTTGAATTGTAGTTCTGTTGTTTGCTGCCGAGTGTCTCCTTTGCAGAAAGCACAGGTGACCAGTCTGGTGAAGAAAGGTGCTCAGAAAATAACACTGGGCATTGGTGATGGTGCTAATGATGTTAGCATGATTCAAGCAGCTCATGTTGGTGTTGGAATAAGTGGGCAGGAGGGCATGCAGGCGGTGATGGCTAGTGATTTTGCAATTGCCCAATTTCGTTTTCTTACAGATTTACTTCTTGTGCATGGACGATGGTCATATCTTAGAATATGCAAGGTTGTTACATACTTCTTTTACAAGAATCTTACATTCACTTTGACTCAGTTTTGGTTTACCTTTCAAACTGGATTTTCCGGTCAAAGATTCTATGATGATTGGTTCCAGTCATTGTATAATGTTATATTTACTGCCCTACCTGTAATAATTGTCGGGCTATTTGACAAGGATGTCAGTGCTGCTCTTTCCAAGAAGTATCCAGAGCTCTACAGAGAGGGAATAAGAAATGTATTTTTCAAGTGGAGAGTTGTGACAACTTGGGCTTTCTTTTCCATCTACCAATCTCTAGTCTTTTATTATTTTGTAACCTGTTCCAGTTCCAGCAGTTCATCTGGCAAGATATTTGGTCTCTGGGATATCAGCACGATGACTTTCACTTGTATTGTAGTGACTGTAAATTTGCGGCTGCTTATGATCTGCAATTCAATTACCAGGTGGCATTATATTACTGTTGGAGGAAGCATCTTAGCATGGTTCATATTTATTTTCTTATATTCTGGTATTATGACGCCACATGATAGGCAGGAGAATGTCTATTTCATCATATATGTCTTAATGAGTACATTCTATTTTTACGTCACTGTTCTTCTCGTCCCCATGGTTGCACTTCTTTGCGATTTCACTTACCAAGGTGTTCAGAGATGGTTTTTCCCCTACGATTATCAGATTGTTCAAGAGCTCCATAGACACGAGGCTGAGGGTAGAAGCACAGCAGGATTACTGGAGGTTCAAAACAATCTTACACCAGAAGAGGCAAGAAGCTATGCGATGACTCAACTCCCTCGCGAGATATCAAAGCACACTGGCTTTGCTTTCGACTCACCAGGCTACGAGTCATTTTTCGCTGCACAGCTTGGTATTTACGCCCCACAGAAGGCATGGGATGTTGCCAGAAGAGCTAGTGTGAAGTCAAGAGCAAAGATTAGGGAAAAGAAATGA 3675 40.33 MSGWDRVRSSTSRFGRGNSAMHERVPSSNTVRLGRVQPQAPGHRTIFCNDREANFIVKFKGNSVSTTKYNFFTFFPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRFQNDMAINNNLVDVLQDQKWESIPWKKLQVGDIVRVRQDGFFPADLLFLASTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGELQCEQPNNSLYTFTGNAIIQKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNAMNVPSKRSTLEKKLDKLILTLFGTLFIMCLIGAIGSGVFVNQKYYYLALDKGGENQFNPSNRFLVVILTMFTLITLYSTIIPISLYVSIEMVKFIQSTQYINKDLNMYHAESNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGTGVTEIERGIAQQNGMKVEEVHKSDNAVQEKGFNFDDARLMRGAWRNESNSDLCKEFFRCLAICHTVLPEGDESPEKITYQAASPDEAALVTAAKNFGFFFYRRTPTTIYVRESHVEKMGKIQDVSYEILNVLEFNSTRKRQSVVCRYADGRLVLYCKGADTVIYERMAGGNDELKNVTRNHLEKFGSSGLRTLCLAYRDLHPDMYESWNEKFIQAKSSLRDREKKLDEVAELIERELILIGCTAIEDKLQEGVPNCIQTLSKAGIKIWMLTGDKMETAINIAYACNLINNDMKQFIISSETDAIREVENRGDQVEIARFTREEVKRELKKCLEEAQQCLQSVSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAQKITLGIGDGANDVSMIQAAHVGVGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSAALSKKYPELYREGIRNVFFKWRVVTTWAFFSIYQSLVFYYFVTCSSSSSSSGKIFGLWDISTMTFTCIVVTVNLRLLMICNSITRWHYITVGGSILAWFIFIFLYSGIMTPHDRQENVYFIIYVLMSTFYFYVTVLLVPMVALLCDFTYQGVQRWFFPYDYQIVQELHRHEAEGRSTAGLLEVQNNLTPEEARSYAMTQLPREISKHTGFAFDSPGYESFFAAQLGIYAPQKAWDVARRASVKSRAKIREKK 1224
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 57918754 57937942 + evm.model.ptg000006l.228 HCH1g0979 538998
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0979 1224 Pfam Cation transport ATPase (P-type) 518 614 - -
HCH1g0979 1224 SFLD p-type atpase 404 905 IPR044492 -
HCH1g0979 1224 FunFam Phospholipid-transporting ATPase 120 289 - -
HCH1g0979 1224 Pfam Phospholipid-translocating ATPase N-terminal 46 110 IPR032631 -
HCH1g0979 1224 Gene3D - 124 289 - -
HCH1g0979 1224 NCBIfam HAD-IC family P-type ATPase 827 933 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH1g0979 1224 FunFam Phospholipid-transporting ATPase 687 894 - -
HCH1g0979 1224 SUPERFAMILY Calcium ATPase, transmembrane domain M 57 1130 IPR023298 -
HCH1g0979 1224 Pfam E1-E2 ATPase 143 322 - -
HCH1g0979 1224 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
HCH1g0979 1224 Gene3D - 687 894 IPR023214 -
HCH1g0979 1224 SUPERFAMILY HAD-like 410 897 IPR036412 -
HCH1g0979 1224 NCBIfam phospholipid-translocating P-type ATPase 59 1138 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
HCH1g0979 1224 SUPERFAMILY Calcium ATPase, transduction domain A 141 285 IPR008250 -
HCH1g0979 1224 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 32 1144 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0048194(PANTHER)|GO:0140326(PANTHER)
HCH1g0979 1224 CDD P-type_ATPase_APLT_Dnf-like 61 1014 - -
HCH1g0979 1224 Gene3D - 534 686 IPR023299 GO:0000166(InterPro)
HCH1g0979 1224 FunFam Phospholipid-transporting ATPase 531 686 - -
HCH1g0979 1224 MobiDBLite consensus disorder prediction 1 30 - -
HCH1g0979 1224 FunFam Phospholipid-transporting ATPase IC 419 431 - -
HCH1g0979 1224 SFLD C1.7: P-type atpase like 404 905 - -
HCH1g0979 1224 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 692 IPR023299 GO:0000166(InterPro)
HCH1g0979 1224 Coils Coil 769 789 - -
HCH1g0979 1224 PRINTS P-type cation-transporting ATPase superfamily signature 854 873 - -
HCH1g0979 1224 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
HCH1g0979 1224 Pfam Phospholipid-translocating P-type ATPase C-terminal 882 1130 IPR032630 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0979 HCH-Chr1:57918754 HCH3g0149 HCH-Chr3:953368 2.00E-271 dispersed
HCH1g0979 HCH-Chr1:57918754 HCH10g1223 HCH-Chr10:43417310 1.60E-271 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0979 K14802 - csv:101207069 2286.15