Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH1g0979 | ATGAGTGGATGGGATAGGGTTAGGTCATCGACTTCGAGATTTGGACGTGGAAATTCAGCAATGCACGAAAGGGTTCCGTCTTCGAATACGGTTCGGCTTGGGCGAGTCCAGCCCCAGGCTCCGGGTCATCGCACGATCTTTTGCAATGATCGCGAGGCCAATTTCATCGTCAAATTTAAGGGGAATTCAGTTTCAACCACTAAGTACAACTTCTTCACTTTTTTTCCAAAAGGGCTGTTTGAACAGTTCAGGCGTGTGGCTAATCTATACTTTCTTACAATCTCAATCTTGTCCACCACACCTATCAGTCCTGTGCATCCAATTACAAATGTGGTCCCATTAAGTCTGGTTCTACTTGTCTCTCTCATTAAAGAAGCATTTGAGGATTGGAAACGATTCCAGAATGATATGGCAATTAATAATAATCTTGTAGATGTTCTGCAAGATCAAAAGTGGGAGAGTATTCCCTGGAAAAAGTTGCAGGTTGGCGATATTGTTAGGGTTCGGCAAGATGGATTTTTTCCTGCAGATCTTCTTTTCCTTGCCAGTACAAATCCAGATGGTGTCTGCTATATTGAGACTGCTAATTTGGATGGGGAGACAAATTTGAAAATTAGAAAGGCTCTGGAAAAGACCTGGGATTACCTCACTCCAGAGAAGGCATCTGAATTTAAAGGTGAATTACAATGTGAGCAACCAAATAATTCGCTGTACACTTTCACTGGCAACGCTATTATCCAGAAGCAAACATTACCTCTCAGCCCTAACCAGCTTCTATTGCGAGGATGCAGCCTCAGGAATACTGAGTATATTGTTGGGGCTGTTATTTTTACAGGTCATGAAACAAAGGTTATGATGAATGCAATGAACGTACCCTCTAAAAGAAGTACTTTGGAGAAAAAACTTGACAAACTTATACTCACACTTTTTGGCACTCTCTTCATCATGTGTCTTATTGGAGCTATTGGCAGTGGCGTGTTTGTAAACCAGAAGTATTACTACCTAGCTCTTGATAAGGGAGGGGAAAACCAATTTAATCCTAGCAACCGATTCTTGGTTGTCATTCTGACCATGTTTACCCTAATTACGCTATACTCAACAATCATTCCTATTTCTCTTTATGTTTCCATTGAGATGGTTAAATTCATTCAGTCAACCCAATATATTAACAAGGATTTAAATATGTACCATGCTGAAAGCAACACCCCTGCATTGGCTAGGACTTCCAATTTGAATGAAGAACTTGGACAGGTAGAATACATCTTTTCAGATAAAACTGGTACTCTTACCAGGAATTTGATGGAGTTTTTTAAGTGTTCAATTGGAGGAGAGGTTTATGGAACCGGCGTCACCGAAATAGAGAGGGGAATTGCTCAGCAGAATGGTATGAAAGTTGAAGAGGTGCATAAATCAGATAACGCAGTACAAGAGAAGGGATTTAATTTTGATGATGCTAGGCTTATGCGAGGAGCATGGAGAAACGAGTCCAATTCTGATCTTTGTAAGGAATTTTTCAGATGCCTTGCTATTTGCCACACAGTACTTCCTGAGGGCGATGAATCCCCTGAAAAAATCACATATCAAGCAGCATCACCTGATGAGGCTGCCTTGGTAACTGCTGCTAAAAACTTTGGCTTCTTCTTTTACAGACGCACACCTACTACTATATATGTTCGTGAATCTCATGTTGAGAAGATGGGTAAAATCCAGGATGTTTCTTATGAAATTCTCAATGTACTTGAGTTCAATAGTACAAGGAAGCGTCAGTCTGTGGTGTGTCGTTATGCAGATGGTAGGCTTGTCTTATATTGCAAGGGTGCTGATACTGTAATATATGAGAGAATGGCTGGTGGAAATGATGAGCTAAAGAATGTGACTAGGAACCACTTGGAGAAATTTGGATCATCTGGTTTGAGAACCCTATGCCTTGCTTATAGAGATTTGCATCCTGACATGTATGAAAGCTGGAATGAAAAATTCATTCAGGCTAAGTCTTCACTACGAGATCGTGAAAAGAAATTGGATGAGGTTGCAGAACTTATAGAGAGAGAACTTATTTTGATTGGCTGTACTGCTATAGAAGACAAGCTTCAAGAAGGAGTACCAAACTGTATACAGACGCTTTCTAAAGCTGGCATCAAGATTTGGATGCTAACAGGAGACAAGATGGAAACTGCTATTAATATAGCTTATGCATGCAATTTAATAAACAATGACATGAAACAGTTTATTATCAGTTCAGAAACAGATGCAATTAGAGAAGTTGAAAACAGGGGTGACCAAGTAGAAATTGCACGTTTTACTAGAGAAGAAGTAAAAAGGGAACTGAAGAAATGCCTTGAGGAAGCACAACAGTGTTTGCAATCTGTTTCTCCACCAAAATTAGCACTTGTGATTGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTTTGCGAGTTACTCTACTAAATTTGAGCTTGAATTGTAGTTCTGTTGTTTGCTGCCGAGTGTCTCCTTTGCAGAAAGCACAGGTGACCAGTCTGGTGAAGAAAGGTGCTCAGAAAATAACACTGGGCATTGGTGATGGTGCTAATGATGTTAGCATGATTCAAGCAGCTCATGTTGGTGTTGGAATAAGTGGGCAGGAGGGCATGCAGGCGGTGATGGCTAGTGATTTTGCAATTGCCCAATTTCGTTTTCTTACAGATTTACTTCTTGTGCATGGACGATGGTCATATCTTAGAATATGCAAGGTTGTTACATACTTCTTTTACAAGAATCTTACATTCACTTTGACTCAGTTTTGGTTTACCTTTCAAACTGGATTTTCCGGTCAAAGATTCTATGATGATTGGTTCCAGTCATTGTATAATGTTATATTTACTGCCCTACCTGTAATAATTGTCGGGCTATTTGACAAGGATGTCAGTGCTGCTCTTTCCAAGAAGTATCCAGAGCTCTACAGAGAGGGAATAAGAAATGTATTTTTCAAGTGGAGAGTTGTGACAACTTGGGCTTTCTTTTCCATCTACCAATCTCTAGTCTTTTATTATTTTGTAACCTGTTCCAGTTCCAGCAGTTCATCTGGCAAGATATTTGGTCTCTGGGATATCAGCACGATGACTTTCACTTGTATTGTAGTGACTGTAAATTTGCGGCTGCTTATGATCTGCAATTCAATTACCAGGTGGCATTATATTACTGTTGGAGGAAGCATCTTAGCATGGTTCATATTTATTTTCTTATATTCTGGTATTATGACGCCACATGATAGGCAGGAGAATGTCTATTTCATCATATATGTCTTAATGAGTACATTCTATTTTTACGTCACTGTTCTTCTCGTCCCCATGGTTGCACTTCTTTGCGATTTCACTTACCAAGGTGTTCAGAGATGGTTTTTCCCCTACGATTATCAGATTGTTCAAGAGCTCCATAGACACGAGGCTGAGGGTAGAAGCACAGCAGGATTACTGGAGGTTCAAAACAATCTTACACCAGAAGAGGCAAGAAGCTATGCGATGACTCAACTCCCTCGCGAGATATCAAAGCACACTGGCTTTGCTTTCGACTCACCAGGCTACGAGTCATTTTTCGCTGCACAGCTTGGTATTTACGCCCCACAGAAGGCATGGGATGTTGCCAGAAGAGCTAGTGTGAAGTCAAGAGCAAAGATTAGGGAAAAGAAATGA | 3675 | 40.33 | MSGWDRVRSSTSRFGRGNSAMHERVPSSNTVRLGRVQPQAPGHRTIFCNDREANFIVKFKGNSVSTTKYNFFTFFPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRFQNDMAINNNLVDVLQDQKWESIPWKKLQVGDIVRVRQDGFFPADLLFLASTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGELQCEQPNNSLYTFTGNAIIQKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNAMNVPSKRSTLEKKLDKLILTLFGTLFIMCLIGAIGSGVFVNQKYYYLALDKGGENQFNPSNRFLVVILTMFTLITLYSTIIPISLYVSIEMVKFIQSTQYINKDLNMYHAESNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGTGVTEIERGIAQQNGMKVEEVHKSDNAVQEKGFNFDDARLMRGAWRNESNSDLCKEFFRCLAICHTVLPEGDESPEKITYQAASPDEAALVTAAKNFGFFFYRRTPTTIYVRESHVEKMGKIQDVSYEILNVLEFNSTRKRQSVVCRYADGRLVLYCKGADTVIYERMAGGNDELKNVTRNHLEKFGSSGLRTLCLAYRDLHPDMYESWNEKFIQAKSSLRDREKKLDEVAELIERELILIGCTAIEDKLQEGVPNCIQTLSKAGIKIWMLTGDKMETAINIAYACNLINNDMKQFIISSETDAIREVENRGDQVEIARFTREEVKRELKKCLEEAQQCLQSVSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAQKITLGIGDGANDVSMIQAAHVGVGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSAALSKKYPELYREGIRNVFFKWRVVTTWAFFSIYQSLVFYYFVTCSSSSSSSGKIFGLWDISTMTFTCIVVTVNLRLLMICNSITRWHYITVGGSILAWFIFIFLYSGIMTPHDRQENVYFIIYVLMSTFYFYVTVLLVPMVALLCDFTYQGVQRWFFPYDYQIVQELHRHEAEGRSTAGLLEVQNNLTPEEARSYAMTQLPREISKHTGFAFDSPGYESFFAAQLGIYAPQKAWDVARRASVKSRAKIREKK | 1224 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 57918754 | 57937942 | + | evm.model.ptg000006l.228 | HCH1g0979 | 538998 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH1g0979 | 1224 | Pfam | Cation transport ATPase (P-type) | 518 | 614 | - | - | |
| HCH1g0979 | 1224 | SFLD | p-type atpase | 404 | 905 | IPR044492 | - | |
| HCH1g0979 | 1224 | FunFam | Phospholipid-transporting ATPase | 120 | 289 | - | - | |
| HCH1g0979 | 1224 | Pfam | Phospholipid-translocating ATPase N-terminal | 46 | 110 | IPR032631 | - | |
| HCH1g0979 | 1224 | Gene3D | - | 124 | 289 | - | - | |
| HCH1g0979 | 1224 | NCBIfam | HAD-IC family P-type ATPase | 827 | 933 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH1g0979 | 1224 | FunFam | Phospholipid-transporting ATPase | 687 | 894 | - | - | |
| HCH1g0979 | 1224 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 57 | 1130 | IPR023298 | - | |
| HCH1g0979 | 1224 | Pfam | E1-E2 ATPase | 143 | 322 | - | - | |
| HCH1g0979 | 1224 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 424 | 430 | IPR018303 | - | |
| HCH1g0979 | 1224 | Gene3D | - | 687 | 894 | IPR023214 | - | |
| HCH1g0979 | 1224 | SUPERFAMILY | HAD-like | 410 | 897 | IPR036412 | - | |
| HCH1g0979 | 1224 | NCBIfam | phospholipid-translocating P-type ATPase | 59 | 1138 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
| HCH1g0979 | 1224 | SUPERFAMILY | Calcium ATPase, transduction domain A | 141 | 285 | IPR008250 | - | |
| HCH1g0979 | 1224 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 32 | 1144 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0048194(PANTHER)|GO:0140326(PANTHER) | |
| HCH1g0979 | 1224 | CDD | P-type_ATPase_APLT_Dnf-like | 61 | 1014 | - | - | |
| HCH1g0979 | 1224 | Gene3D | - | 534 | 686 | IPR023299 | GO:0000166(InterPro) | |
| HCH1g0979 | 1224 | FunFam | Phospholipid-transporting ATPase | 531 | 686 | - | - | |
| HCH1g0979 | 1224 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| HCH1g0979 | 1224 | FunFam | Phospholipid-transporting ATPase IC | 419 | 431 | - | - | |
| HCH1g0979 | 1224 | SFLD | C1.7: P-type atpase like | 404 | 905 | - | - | |
| HCH1g0979 | 1224 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 460 | 692 | IPR023299 | GO:0000166(InterPro) | |
| HCH1g0979 | 1224 | Coils | Coil | 769 | 789 | - | - | |
| HCH1g0979 | 1224 | PRINTS | P-type cation-transporting ATPase superfamily signature | 854 | 873 | - | - | |
| HCH1g0979 | 1224 | PRINTS | P-type cation-transporting ATPase superfamily signature | 422 | 436 | - | - | |
| HCH1g0979 | 1224 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 882 | 1130 | IPR032630 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH1g0979 | HCH-Chr1:57918754 | HCH3g0149 | HCH-Chr3:953368 | 2.00E-271 | dispersed | |
| HCH1g0979 | HCH-Chr1:57918754 | HCH10g1223 | HCH-Chr10:43417310 | 1.60E-271 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH1g0979 | K14802 | - | csv:101207069 | 2286.15 |