Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0992 ATGGCTGTCTTGTTTAAGCAGCTGTGGCCATTCATCTTATTCTTTCTAATCCCATCTGTTTTTCATCATCCTCTCTGTTTTTGCCAATTCAACCCCCCTCAAAATATTGAAACTTTCTATCCTTACCCAATTCTATCCCCTCCATCTCCTCCTCCGTATCCGCCACCGTTACCGAAACCGCTACCACAACCTTCTAAATCCACGTCCACCAGAACCATCGTCACGGCTGTTGTTGTCACTGCCACCGGCATGACTGTTATTTCCGCCTTGCTCTTCTTTTTTATCCAAAAATGTGTTATTGCGAGAAGGCGGAAAAAGGAGGAATTAGGCCATGGTACCGGTCCCGGGACCGGTATCGGTTCGGGTCCGGTTGCGCAACCGGTCGTTTCTCTTCCTCAAACTCGAAGTGAATTTACGAGAATTGATGGGAATCTTAAGGGGTTTATTGTTGATGAAAATGGTTTAGATGTGATTTATTGGAGGAAGCTTGAAAAGAGTAAATCTAAAAATAGTTTTGATCGAATAAATGGAGATGAAAATGGAGGAGAGGGAGGAGTTTATGGTAAAGGAAATCGAAGCAAAAAAATTGAACCTGTTCATGAAATTCCTTTGCTACGTGGGAAATCTTCAACTTCTCATGTCAAAATTGAACCACAAGAGGAGGAAATTAGCTATAGAACATCTCCACCTCCTCCTCCGCCGTCTCCTCCACCTCCACCGCCACCGCGTCCTATATCACAATCTCTCTTAGCCGTTCCAACACCTCCTCCGCCGTCTCCTCCACCTCCACCGCCACCGCGTCCTATATCACAATCTCTCTTAGCCGTTCCAACACCTCCTCCGATTCCAACCAAGACCAATTCAACACCACCACCTCTTCCTCCTCCTATACCGGCTAAGGCCAATCCGTCACCACCGCCACCGCCCCCGCCCAAGGCCGGAGGTTCTAAATTACCGTTAAAGCCGTTACCGGTTATGAAAGGGGGTAAATCTTCTTTGGGAGAGGCCTCTTCATCAATGGATAATGGTCAGGTTAAAATGAAGCCTTTGCATTGGGATAAAGTTAATACAGCAAATGCTGGTCATTCAATGGTTTGGGATAAAATTGATGCTGGTTCTTTCAAATTTGATGGAGATCTTATGGAAGCTCTCTTTGGTTATGTTGCGACTAATCGGAAATCTCCTCGGGGTGACGGTAATTCTGCGAATGCCGTAGGTCGGAATGCTGCATCGGCGCAAACTTTCATTCTTGAACCAAAGAAGTCACAGAATATAGCTATTGTCATCAAGTCCTTGGCAGTTTCTCGTAATGAGATCCTTGATGCAATTATGGAAGGGCAAGGCCTTGAAATAGAGGTTCTTGAAAAATTTACTAGGATTGCTTTAACACAAGAAGAAATATCCCAAATTCTCGCATACAATGGAGATCAACAGAAACTTGCTGATGCTGAATCCTTCCTTTACTATCTTCTCAAATCGGTTCCATCGGCTATTACGCGCCTGAATGCGATGTATTTCCGATCAAATTATGGTTCGGAGATCCTCCATCTCAAGGAATCATTACAAATTCTGGAATCGGCATGCAATGAGCTTCGAATTCGAGGACTCTTTTTGAAACTTCTTGAAGCAATTCTTAAAGCTGGGAATCGCCTGAATGCAGGAACTTCAAGAGGAAATGCTCGAGCTTTCAATCTTAGTTCCCTCCAGAAGCTCTCCGACGTAAGAAGTACCGACGGAAAAACTACTTTACTTCACTTTGTTGTGGAAGAAGTTGTCAGGACAGAAGGGAAAAAATGTGTCTTAAACAGGAATAAGAGCTTGAGCCGTAACAGCAGCTACAGCAGTGACAACAGCGTAAGTAGCTCTGGAAATTCGACATCGAAAGACGATAGAGTAAAGGAATATATGATGTTAGGATTACCAGTGGTAGGAGGTCTAAGTGCTGAATTCTCTAATGTAAAGAAAGCTGCCACAATCGATTACGACAGCATCGCCAACACCAGCACATCTTTCACAGCCCGAACCTCCGAAATCCGACAACTCTTGACTCAATTTACAGACAATGGAGGAGGGTTTGAGAAAGAAATGAAGGCCTTTCTTGATGCAGCAGAGGATGAGCTGAAGGTTGTGAGAGAGGAACAAGCAAAAGTTATGGAACATGTGAAGAAAACAACTGATTATTATCAGGGAGGAGCTTCAAAGGATAAAGAAGCAAATAGACTGCAACTATTCATGATAGTTAAGGGTTTCCTAGAAATGGTAGACCAAGTTTGTGTTGAAATTGCTAGAAATCTCCAAAAGAGAAGAACACCATCAGCAGTAAATTTGGGCTCTTCACCAATGAGAACAAAGGCAGTGTTTGCTAACTTACCAGAAAATTTCATGTCAGACAAGTCAAGAGGAGGCAGTTCTAGTGAATCAGATGATGATTTCTGA 2436 43.6 MAVLFKQLWPFILFFLIPSVFHHPLCFCQFNPPQNIETFYPYPILSPPSPPPYPPPLPKPLPQPSKSTSTRTIVTAVVVTATGMTVISALLFFFIQKCVIARRRKKEELGHGTGPGTGIGSGPVAQPVVSLPQTRSEFTRIDGNLKGFIVDENGLDVIYWRKLEKSKSKNSFDRINGDENGGEGGVYGKGNRSKKIEPVHEIPLLRGKSSTSHVKIEPQEEEISYRTSPPPPPPSPPPPPPPRPISQSLLAVPTPPPPSPPPPPPPRPISQSLLAVPTPPPIPTKTNSTPPPLPPPIPAKANPSPPPPPPPKAGGSKLPLKPLPVMKGGKSSLGEASSSMDNGQVKMKPLHWDKVNTANAGHSMVWDKIDAGSFKFDGDLMEALFGYVATNRKSPRGDGNSANAVGRNAASAQTFILEPKKSQNIAIVIKSLAVSRNEILDAIMEGQGLEIEVLEKFTRIALTQEEISQILAYNGDQQKLADAESFLYYLLKSVPSAITRLNAMYFRSNYGSEILHLKESLQILESACNELRIRGLFLKLLEAILKAGNRLNAGTSRGNARAFNLSSLQKLSDVRSTDGKTTLLHFVVEEVVRTEGKKCVLNRNKSLSRNSSYSSDNSVSSSGNSTSKDDRVKEYMMLGLPVVGGLSAEFSNVKKAATIDYDSIANTSTSFTARTSEIRQLLTQFTDNGGGFEKEMKAFLDAAEDELKVVREEQAKVMEHVKKTTDYYQGGASKDKEANRLQLFMIVKGFLEMVDQVCVEIARNLQKRRTPSAVNLGSSPMRTKAVFANLPENFMSDKSRGGSSSESDDDF 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58015394 58017932 - evm.model.ptg000006l.215 HCH1g0992 539011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0992 811 Coils Coil 514 534 - -
HCH1g0992 811 PANTHER FORMIN-RELATED 47 810 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
HCH1g0992 811 MobiDBLite consensus disorder prediction 608 630 - -
HCH1g0992 811 MobiDBLite consensus disorder prediction 225 317 - -
HCH1g0992 811 MobiDBLite consensus disorder prediction 169 343 - -
HCH1g0992 811 Pfam Formin Homology 2 Domain 340 754 IPR015425 -
HCH1g0992 811 Coils Coil 693 720 - -
HCH1g0992 811 ProSiteProfiles Formin homology-2 (FH2) domain profile. 337 780 IPR015425 -
HCH1g0992 811 Gene3D Formin, FH2 domain 358 774 IPR042201 -
HCH1g0992 811 SMART it6_source 337 769 IPR015425 -
HCH1g0992 811 MobiDBLite consensus disorder prediction 608 626 - -
HCH1g0992 811 SUPERFAMILY Formin homology 2 domain (FH2 domain) 256 769 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0992 HCH-Chr1:58015394 HCH4g1640 HCH-Chr4:15566808 8.50E-125 dispersed
HCH1g0992 HCH-Chr1:58015394 HCH12g1149 HCH-Chr12:9578757 1.60E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0992 K28090 - csv:101208197 821.617