Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0993 ATGGCGAGAAACGGTGTTTTTTCAAGACGGAGGAAATCCGACAAGATCGATGTTTTCGATCATTTCCCGACATCTGATTCCGATGTTCATGTTCTTGCCGTTGACGACAGCCTCATCGACCGTACAGTCATCGAGCGTTTACTCAAACTCACCGCTTGTAAAGTTACGGCAGTGGATAGTGGATTAAGAGCTCTTCAATATCTTGGATTACAAGATGAATCCGATTCCACCGTTGGATTGAAGGTTGATATGATTATTACTGATTATTGCATGCCTGGAATGACTGGCTACGAGTTGCTCAAGAAAATCAAGGAATCTTCTACTCTAAGAAAGATACCGGTGGTAATAATGTCATCGGAGAACGTGGTGGCGCGTATAGATCGGTGTTTAGAGGAAGGGGCGGAGGATTTTATAGTAAAGCCGGTGAAATTATCAGATGTGAAGAGGCTCAGGGAATTTATGATGGGTGACGATAAGCCGGGAAGTGAAAATCAAAGAAGTGGGATCAACAAGAGGAAATTAAGAGACCCTTGTGATGTGGCTGCATCATCACCGTCGATTTCTTTGTCATCGACATCGCCGTCTCCGTCGCTATCGACATCGCCGTCTCCGTCGCTATCGACATCGCATTCGCTTCCATCGACGCCGTCGTCATCGGAGTCGGACGAGCCATCTTCTCCGACGTCAACTCTTCAATCCGACGGTTCAAAATGA 714 46.36 MARNGVFSRRRKSDKIDVFDHFPTSDSDVHVLAVDDSLIDRTVIERLLKLTACKVTAVDSGLRALQYLGLQDESDSTVGLKVDMIITDYCMPGMTGYELLKKIKESSTLRKIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREFMMGDDKPGSENQRSGINKRKLRDPCDVAASSPSISLSSTSPSPSLSTSPSPSLSTSHSLPSTPSSSESDEPSSPTSTLQSDGSK 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58024338 58025522 - evm.model.ptg000006l.214 HCH1g0993 539012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0993 237 CDD REC_typeA_ARR 31 150 - -
HCH1g0993 237 MobiDBLite consensus disorder prediction 155 237 - -
HCH1g0993 237 Gene3D - 29 185 - -
HCH1g0993 237 MobiDBLite consensus disorder prediction 155 178 - -
HCH1g0993 237 PANTHER TWO-COMPONENT RESPONSE REGULATOR 27 218 IPR045279 GO:0009736(InterPro)
HCH1g0993 237 SMART REC_2 29 151 IPR001789 GO:0000160(InterPro)
HCH1g0993 237 MobiDBLite consensus disorder prediction 183 237 - -
HCH1g0993 237 SUPERFAMILY CheY-like 28 150 IPR011006 -
HCH1g0993 237 ProSiteProfiles Response regulatory domain profile. 30 155 IPR001789 GO:0000160(InterPro)
HCH1g0993 237 Pfam Response regulator receiver domain 31 147 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0993 HCH-Chr1:58024338 HCH9g1007 HCH-Chr9:8043156 3.80E-41 dispersed
HCH1g0993 HCH-Chr1:58024338 HCH8g1351 HCH-Chr8:48364891 4.10E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33108 PF00072 Response_reg 2.20E-22 CL0304 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0993 K14492 - csv:101209506 310.071