Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1001 ATGTCCATATCGATTTCCGATTGCTTCTCCGACTTACTTTGTGATGAGGATTCCCCCGGCATCCTGTCCGGTGAATCACCTGAATATTCTTCCGACTTCGACTCTCCGGCGTATATCGAAGAATCGATCGCCGGATTCATCGAAGACGAAAGGAATTTCGTTCCTTGTTTCGACTATTTCTCTCGCTTTCAACCTCCGTCGCTGGACGCCGCCGCGAGATTAGACTCCGTTGCATGGATTCTTAAGGTTCAAAGCTACCATGGATTTCAGCCGCTGACGGCGTATCTCTCTGTTAACTACTTCGATCGCTTCCTTTGTTCTCGCCGGTTGCCGCAAACAAATGGGTGGCCTTTGCAACTCTTATCTGTGGCTTGTCTCTCACTAGCTGCTAAACTGGAGGAACCCCTGGTTCCTTCTTTGCTGGATCTTCAGGTTGAAGGGGCCAAATATATATTTGAACCAAGAACAATATGCAGGATGGAACTTCTCGTTCTTCGTGTATTGGATTGGCGGCTTCGTTCTATAACACCATTCAATTTCTTTGCTTTCTTTGCATGCAAGCTTGATGCTTCAGGAACTTTTATTGGGTCTCTTATTTCACGAGCTACAGAAATTATCTTATCCAATATTCGAGAAGCTAGCTTTCTTGAGTACTGGCCATCATGTATTGCGGTTGCAGCCCTGCTTTGTGCAGCAAATGAAGTTCCTAATTTGTCTGATCTTGTCAATCCTGAACATGCTGAATCCTGGTGCAATGGTCTAAGGAAAGAAAATATCATCAGTTGCTACCGGTTAATGCAAGAATTTGTGCTTGATCATGGCCGGAGAAAGTCCCCCAAAATCTTACCAAAGTTTAGAGTGACAGTTCGTACTAGAATGAGATCCGGGGACGGCTTATCGTCCTCCTCCTCATCTTCGTCTTCATCGTCACCAAACAAGAGGAGAAAATTAAACCAGACCCTATGGGTAGATGATGACAAAGGTAACATTGAGTAG 996 45.08 MSISISDCFSDLLCDEDSPGILSGESPEYSSDFDSPAYIEESIAGFIEDERNFVPCFDYFSRFQPPSLDAAARLDSVAWILKVQSYHGFQPLTAYLSVNYFDRFLCSRRLPQTNGWPLQLLSVACLSLAAKLEEPLVPSLLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFNFFAFFACKLDASGTFIGSLISRATEIILSNIREASFLEYWPSCIAVAALLCAANEVPNLSDLVNPEHAESWCNGLRKENIISCYRLMQEFVLDHGRRKSPKILPKFRVTVRTRMRSGDGLSSSSSSSSSSSPNKRRKLNQTLWVDDDKGNIE 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58081141 58083438 + evm.model.ptg000006l.206 HCH1g1001 539020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1001 331 FunFam D2/4-type cyclin 56 173 - -
HCH1g1001 331 MobiDBLite consensus disorder prediction 294 331 - -
HCH1g1001 331 SUPERFAMILY Cyclin-like 157 280 IPR036915 -
HCH1g1001 331 SMART cyclin_7 78 166 IPR013763 -
HCH1g1001 331 Gene3D - 47 240 - -
HCH1g1001 331 SUPERFAMILY Cyclin-like 32 172 IPR036915 -
HCH1g1001 331 CDD CYCLIN_AtCycD-like_rpt1 72 170 - -
HCH1g1001 331 Pfam Cyclin, C-terminal domain 175 287 IPR004367 -
HCH1g1001 331 MobiDBLite consensus disorder prediction 294 317 - -
HCH1g1001 331 Gene3D - 56 173 - -
HCH1g1001 331 CDD CYCLIN_AtCycD-like_rpt2 175 266 - -
HCH1g1001 331 PANTHER CYCLINS 36 275 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH1g1001 331 SMART Cyclin_C_2 175 308 IPR004367 -
HCH1g1001 331 Pfam Cyclin, N-terminal domain 46 173 IPR006671 -
HCH1g1001 331 ProSitePatterns Cyclins signature. 73 104 IPR048258 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0558 HCH-Chr12:3280564 HCH1g1001 HCH-Chr1:58081141 2.30E-36 dispersed
HCH1g1001 HCH-Chr1:58081141 HCH4g0920 HCH-Chr4:5898673 1.70E-119 dispersed
HCH1g1001 HCH-Chr1:58081141 HCH11g0922 HCH-Chr11:40454716 1.40E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1001 K18810 - csv:101209417 521.931