Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1015 ATGGCAGCGAGATCCCCCACAAACTTCTTGGACCTGGCTTCTGGAGATTTACTGGATATTCCTCGTACACCTAGGTCCTTGCCTCGGGTAATGACTGTTCCTGGAATTATTTCTGAATTGGATGATTATGGCAGCAATGATGGAGATTCAGAGTCTTCATCTGTGTGTCGTGAGCGGAAGATTATAGTTGCAAATATGTTGCCCTTGCATGCTAAAAAGGATGGGGAATCTTCCAAATGGTGCTTCAGTTTAGACGAGGATTCACTTCTACTGCAGTTAAAGAATGGCTTTTCACCTGAGACAGAGGTTATATATGTGGGTTCCCTTAAGGTTGAAATCGACCCCAGTGATCAGGAAGAGGTTGCTCAGAAGTTGTTTGAAAATTTTCACTGTGTACCTACATTTCTGCCTTACGATCTCCAGAAAAGGTTTTATCTTGGGTTCTGCAAACAGCAGCTATGGCCCTTGTTCCATTACATGCTTCCCATGTGCCCAGAACATGGTGATCGCTTTGACCGTTTGCTTTGGCTAGCTTATGTTTCTGCAAATAAATTATTTGCTGACAAGGTTATGGAGGTTATCAACCCTGAGGAAGATTCTGTTTGGGTTCATGACTATCACTTAATGGTTCTTCCCACATTTTTGCGGAAGCGCTTTAATCGAGTTAAACTTGGATTTTTCCTACATAGCCCATTTCCGTCATCAGAAATCTATCGGACTTTACCAGTTCGAGATGAGATTCTCCGTGGTCTGTTAAACTGTGATTTAATTGGTTTTCATACATTTGATTATGCCCGCCATTTTCTATCATGCTGCAGCAGAATGTTGGGTCTGGATTATGAATCCAAGCGGGGACACATTGGACTAGATTATTTCGGCCGCACGGTATTTATCAAAATCTTGCCTGTTGGTATTCACATGGGTCGGCTGGAATCAGTGATGAACCTTCCATCTACATCTGCTAAAGTCAGAGAGATTAGACAACAATTCATGGGGAAGAAATTAATTCTTGGTATTGATGACATGGACATTTTTAAGGGTATAAGCCTGAAGCTTCTTGCTATTGAACAGCTTTTACGGCAACGCCCAGAGTTGCGAGGCAAAATAGTCTTGGTTCAAATAGTGAATCCTGCAAGGGGTTCAGGGAAAGATGTTCATGAAGCTCATAAGGAAGCCTACCTTGCAGCTGAAAGGATCAACAGAGTTTATGGTTCAACTGACTATAAACCAGTGATTTTGATTGATCGCCCCGTTCCTCGTTTTGAAAAGACTGCTTATTATGCTCTAGCAGAATGCTGCATAGTGAGTGCCGTAAGGGACGGTATGAATTTGGTTCCGTACAAGTATATTGTTTGCAGGCAAGGAACTCCGCATATGGATGAGGCCATGGGCTTAGAAGTTGGCTCTCCTCGGACAAGCATGCTTGTAGTGTCTGAGTTTATTGGTTGCTCGCCTTCTTTAAGTGGAGCCATCAGGGTTAACCCTTGGGACATTGATGCTGTTGCTGATTCCTTGGAACTGGCCATAACCATGCACGAGTCAGAGAAGTTGTTGCGGCATGAGAAGCACTATCGATATGTCAGTTCGCATGATATAGGGTATTGGTCTCGCAGTTTTATACAAGATTTAGACAGAGCATGTCAAGATCACTACACTAAGCGGTGCTGGGGAATTGGCTTGGGTCTGCGTTTTAGAGTTGTTTCTCTTTCTCCTGGGTTTAGGAAGTTAACAATTGACCACATTGTCTCAGCATATAAAAGAACTCATAGGAGGGCGATATTTTTGGACTATGATGGCACAATTATTTCACAAAGCTCTATTATTAAGACACCAAGTCCAGAAGTTATATCTGTTTTGACTACCCTTTGCAATGACCCTTGTAACACTGTGTTTGTTGTTAGTGGGAGGGGGAGAAGTTCTTTGGGCGAGTGGTTTGCCTCCTGTGAAATGTTGGGGATTGCCGCTGAACATGGATACTTTATAAGGTGGGGTGGAACTTCAGATTGGGAGGTCAGTGCGTTGTCTTCTGATGTGGATTGGATTAAAATTGTAGAACCAGTGATGAGATTATATACTGAAGCAACCGATGGCTCGTGCATAGAAACTAAAGAGAGTGCTTTGGTCTGGCACCATCAAGATGCCGATTCTGATTTTGGATCCTGTCAGGCAAAAGAATTACTGGACCATCTAGAAAACGTACTTGCCAATGAACCAGTCGTGGTTAAAAGGGGCCAGCATATTGTTGAAGTTAAGCCACAGGGAGTAAGCAAAGGGTTGGTCGCAGAGAAGGTTCTTTCGAGAATGGTGGATGGTGGAAGCCCACCTGATTTTGTGATGTGCATTGGGGATGATAGATCAGATGAAGATATGTTCGAGAGCATATTAAGCACCGTCTCCAGTCCTTCACTGCCATCAGCTCCTGAAATTTTTGCCTGCACTGTTGGGCGAAAGCCAAGCAAGGCAAAGTTTTATCTTGACGATACTTCAGACGTCGTGAAATTGCTGCAAGGCCTCGCCTCTTCTTCACGTCCAAGACCTCGGCAACCCACACAAACCCGTGTTTCTTTCGAGAGTGTTGTTTGA 2583 43.75 MAARSPTNFLDLASGDLLDIPRTPRSLPRVMTVPGIISELDDYGSNDGDSESSSVCRERKIIVANMLPLHAKKDGESSKWCFSLDEDSLLLQLKNGFSPETEVIYVGSLKVEIDPSDQEEVAQKLFENFHCVPTFLPYDLQKRFYLGFCKQQLWPLFHYMLPMCPEHGDRFDRLLWLAYVSANKLFADKVMEVINPEEDSVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTVFIKILPVGIHMGRLESVMNLPSTSAKVREIRQQFMGKKLILGIDDMDIFKGISLKLLAIEQLLRQRPELRGKIVLVQIVNPARGSGKDVHEAHKEAYLAAERINRVYGSTDYKPVILIDRPVPRFEKTAYYALAECCIVSAVRDGMNLVPYKYIVCRQGTPHMDEAMGLEVGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADSLELAITMHESEKLLRHEKHYRYVSSHDIGYWSRSFIQDLDRACQDHYTKRCWGIGLGLRFRVVSLSPGFRKLTIDHIVSAYKRTHRRAIFLDYDGTIISQSSIIKTPSPEVISVLTTLCNDPCNTVFVVSGRGRSSLGEWFASCEMLGIAAEHGYFIRWGGTSDWEVSALSSDVDWIKIVEPVMRLYTEATDGSCIETKESALVWHHQDADSDFGSCQAKELLDHLENVLANEPVVVKRGQHIVEVKPQGVSKGLVAEKVLSRMVDGGSPPDFVMCIGDDRSDEDMFESILSTVSSPSLPSAPEIFACTVGRKPSKAKFYLDDTSDVVKLLQGLASSSRPRPRQPTQTRVSFESVV 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58160433 58163198 - evm.model.ptg000006l.192 HCH1g1015 539034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1015 860 Gene3D Glycogen Phosphorylase B; 312 528 - -
HCH1g1015 860 MobiDBLite consensus disorder prediction 839 860 - -
HCH1g1015 860 MobiDBLite consensus disorder prediction 841 860 - -
HCH1g1015 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 311 - -
HCH1g1015 860 NCBIfam HAD-IIB family hydrolase 592 793 IPR006379 -
HCH1g1015 860 Gene3D Glycogen Phosphorylase B; 52 311 - -
HCH1g1015 860 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
HCH1g1015 860 SUPERFAMILY HAD-like 591 838 IPR036412 -
HCH1g1015 860 CDD HAD_TPP 592 833 - -
HCH1g1015 860 Pfam Trehalose-phosphatase 594 829 IPR003337 GO:0005992(InterPro)
HCH1g1015 860 Gene3D - 590 717 IPR023214 -
HCH1g1015 860 Gene3D - 719 851 IPR023214 -
HCH1g1015 860 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 720 851 - -
HCH1g1015 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
HCH1g1015 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
HCH1g1015 860 NCBIfam trehalose-phosphatase 589 838 IPR003337 GO:0005992(InterPro)
HCH1g1015 860 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH1g1015 860 CDD GT20_TPS 59 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH1g1015 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1015 K16055 - - csv:101212688 1621.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1015 HCH-Chr1:58160433 HCH6g1128 HCH-Chr6:45863708 0.00E+00 dispersed
HCH1g1015 HCH-Chr1:58160433 HCH8g1373 HCH-Chr8:48475020 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH5g0652 . 29 583 Trehalose Biosynthesis Gene Families AT4G24040 57.3 7.4e-193 670.6
HCH7g0126 . 1 853 Trehalose Biosynthesis Gene Families AT1G06410 76.7 0.0e+00 1372.8
HCH14g1006 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1360.5
HCH6g1128 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1144.0
HCH1g0188 . 1 840 Trehalose Biosynthesis Gene Families AT1G06410 63.8 0.0e+00 1115.1
HCH1g1015 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.4 0.0e+00 1083.6
HCH8g1373 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 60.0 2.5e-308 1054.7
HCH3g0746 . 115 723 Trehalose Biosynthesis Gene Families AT1G16980 64.8 4.4e-244 840.9
HCH12g0986 . 83 694 Trehalose Biosynthesis Gene Families AT1G16980 65.3 8.3e-243 836.6
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 74.6 0.0e+00 1349.7
HCH8g1373 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 66.4 0.0e+00 1223.4
HCH1g0188 . 1 851 Trehalose Biosynthesis Gene Families AT1G23870 62.7 0.0e+00 1116.3
HCH14g1006 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.7 0.0e+00 1111.3
HCH6g1128 . 1 839 Trehalose Biosynthesis Gene Families AT1G23870 62.8 0.0e+00 1101.7
HCH7g0126 . 1 854 Trehalose Biosynthesis Gene Families AT1G23870 60.1 0.0e+00 1096.6
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G60140 73.9 0.0e+00 1343.6
HCH8g1373 . 1 860 Trehalose Biosynthesis Gene Families AT1G60140 65.9 0.0e+00 1211.4
HCH14g1006 . 1 841 Trehalose Biosynthesis Gene Families AT1G60140 61.4 0.0e+00 1085.5
HCH1g0188 . 1 849 Trehalose Biosynthesis Gene Families AT1G60140 61.9 0.0e+00 1082.4
HCH6g1128 . 1 838 Trehalose Biosynthesis Gene Families AT1G60140 60.2 1.3e-312 1068.9
HCH7g0126 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.2 1.6e-310 1062.0
HCH1g0188 . 1 845 Trehalose Biosynthesis Gene Families AT1G68020 80.7 0.0e+00 1411.0
HCH6g1128 . 1 842 Trehalose Biosynthesis Gene Families AT1G68020 71.6 0.0e+00 1275.8
HCH14g1006 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1155.6
HCH7g0126 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1137.9
HCH1g1015 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1114.8
HCH8g1373 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.8 0.0e+00 1106.3
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G70290 67.9 0.0e+00 1192.6
HCH8g1373 . 1 857 Trehalose Biosynthesis Gene Families AT1G70290 61.7 0.0e+00 1099.0
HCH14g1006 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.2 4.4e-294 1007.3
HCH7g0126 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 57.0 5.3e-292 1000.3
HCH1g0188 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.5 4.5e-291 997.3
HCH6g1128 . 1 850 Trehalose Biosynthesis Gene Families AT1G70290 56.5 2.2e-285 978.4
HCH12g0986 . 1 919 Trehalose Biosynthesis Gene Families AT1G78580 78.6 0.0e+00 1468.8
HCH3g0746 . 29 953 Trehalose Biosynthesis Gene Families AT1G78580 73.5 0.0e+00 1372.1
HCH1g1015 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.7 3.9e-309 1057.4
HCH6g1128 . 26 839 Trehalose Biosynthesis Gene Families AT2G18700 60.5 1.5e-300 1028.9
HCH8g1373 . 10 842 Trehalose Biosynthesis Gene Families AT2G18700 58.9 8.9e-298 1019.6
HCH14g1006 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.7 1.2e-297 1019.2
HCH7g0126 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.3 2.7e-294 1008.1
HCH1g0188 . 1 840 Trehalose Biosynthesis Gene Families AT2G18700 58.0 1.5e-289 992.3
HCH6g1128 . 1 836 Trehalose Biosynthesis Gene Families AT4G17770 81.2 0.0e+00 1397.5
HCH1g0188 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 71.0 0.0e+00 1252.7
HCH14g1006 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.4 0.0e+00 1182.2
HCH7g0126 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.3 0.0e+00 1161.4
HCH1g1015 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1134.8
HCH8g1373 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 62.9 0.0e+00 1115.1
HCH12g0986 . 91 917 Trehalose Biosynthesis Gene Families AT4G27550 63.2 4.0e-305 1043.9
HCH3g0746 . 119 951 Trehalose Biosynthesis Gene Families AT4G27550 59.2 3.9e-292 1000.7
HCH12g0986 . 1 919 Trehalose Biosynthesis Gene Families AT1G78580 78.6 0.0e+00 1468.8
HCH3g0746 . 29 953 Trehalose Biosynthesis Gene Families AT1G78580 73.5 0.0e+00 1372.1
HCH3g0746 . 115 723 Trehalose Biosynthesis Gene Families AT1G16980 64.8 4.4e-244 840.9
HCH12g0986 . 83 694 Trehalose Biosynthesis Gene Families AT1G16980 65.3 8.3e-243 836.6
HCH12g0986 . 91 612 Trehalose Biosynthesis Gene Families AT1G17000 62.1 1.3e-191 666.8
HCH3g0746 . 120 638 Trehalose Biosynthesis Gene Families AT1G17000 61.5 5.1e-191 664.8
HCH12g0986 . 91 917 Trehalose Biosynthesis Gene Families AT4G27550 63.2 4.0e-305 1043.9
HCH3g0746 . 119 951 Trehalose Biosynthesis Gene Families AT4G27550 59.2 3.9e-292 1000.7
HCH6g1128 . 1 836 Trehalose Biosynthesis Gene Families AT4G17770 81.2 0.0e+00 1397.5
HCH1g0188 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 71.0 0.0e+00 1252.7
HCH14g1006 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.4 0.0e+00 1182.2
HCH7g0126 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.3 0.0e+00 1161.4
HCH1g1015 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1134.8
HCH8g1373 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 62.9 0.0e+00 1115.1
HCH1g0188 . 1 845 Trehalose Biosynthesis Gene Families AT1G68020 80.7 0.0e+00 1411.0
HCH6g1128 . 1 842 Trehalose Biosynthesis Gene Families AT1G68020 71.6 0.0e+00 1275.8
HCH14g1006 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1155.6
HCH7g0126 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1137.9
HCH1g1015 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1114.8
HCH8g1373 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.8 0.0e+00 1106.3
HCH7g0126 . 1 853 Trehalose Biosynthesis Gene Families AT1G06410 76.7 0.0e+00 1372.8
HCH14g1006 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1360.5
HCH6g1128 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1144.0
HCH1g0188 . 1 840 Trehalose Biosynthesis Gene Families AT1G06410 63.8 0.0e+00 1115.1
HCH1g1015 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.4 0.0e+00 1083.6
HCH8g1373 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 60.0 2.5e-308 1054.7
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G70290 67.9 0.0e+00 1192.6
HCH8g1373 . 1 857 Trehalose Biosynthesis Gene Families AT1G70290 61.7 0.0e+00 1099.0
HCH14g1006 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.2 4.4e-294 1007.3
HCH7g0126 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 57.0 5.3e-292 1000.3
HCH1g0188 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.5 4.5e-291 997.3
HCH6g1128 . 1 850 Trehalose Biosynthesis Gene Families AT1G70290 56.5 2.2e-285 978.4
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 74.6 0.0e+00 1349.7
HCH8g1373 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 66.4 0.0e+00 1223.4
HCH1g0188 . 1 851 Trehalose Biosynthesis Gene Families AT1G23870 62.7 0.0e+00 1116.3
HCH14g1006 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.7 0.0e+00 1111.3
HCH6g1128 . 1 839 Trehalose Biosynthesis Gene Families AT1G23870 62.8 0.0e+00 1101.7
HCH7g0126 . 1 854 Trehalose Biosynthesis Gene Families AT1G23870 60.1 0.0e+00 1096.6
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G60140 73.9 0.0e+00 1343.6
HCH8g1373 . 1 860 Trehalose Biosynthesis Gene Families AT1G60140 65.9 0.0e+00 1211.4
HCH14g1006 . 1 841 Trehalose Biosynthesis Gene Families AT1G60140 61.4 0.0e+00 1085.5
HCH1g0188 . 1 849 Trehalose Biosynthesis Gene Families AT1G60140 61.9 0.0e+00 1082.4
HCH6g1128 . 1 838 Trehalose Biosynthesis Gene Families AT1G60140 60.2 1.3e-312 1068.9
HCH7g0126 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.2 1.6e-310 1062.0
HCH1g1015 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.7 3.9e-309 1057.4
HCH6g1128 . 26 839 Trehalose Biosynthesis Gene Families AT2G18700 60.5 1.5e-300 1028.9
HCH8g1373 . 10 842 Trehalose Biosynthesis Gene Families AT2G18700 58.9 8.9e-298 1019.6
HCH14g1006 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.7 1.2e-297 1019.2
HCH7g0126 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.3 2.7e-294 1008.1
HCH1g0188 . 1 840 Trehalose Biosynthesis Gene Families AT2G18700 58.0 1.5e-289 992.3
HCH5g0652 . 29 583 Trehalose Biosynthesis Gene Families AT4G24040 57.3 7.4e-193 670.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000820 3 9 5 4 5 2 1 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 1 2 6 7 2 91