Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1015 ATGGCAGCGAGATCCCCCACAAACTTCTTGGACCTGGCTTCTGGAGATTTACTGGATATTCCTCGTACACCTAGGTCCTTGCCTCGGGTAATGACTGTTCCTGGAATTATTTCTGAATTGGATGATTATGGCAGCAATGATGGAGATTCAGAGTCTTCATCTGTGTGTCGTGAGCGGAAGATTATAGTTGCAAATATGTTGCCCTTGCATGCTAAAAAGGATGGGGAATCTTCCAAATGGTGCTTCAGTTTAGACGAGGATTCACTTCTACTGCAGTTAAAGAATGGCTTTTCACCTGAGACAGAGGTTATATATGTGGGTTCCCTTAAGGTTGAAATCGACCCCAGTGATCAGGAAGAGGTTGCTCAGAAGTTGTTTGAAAATTTTCACTGTGTACCTACATTTCTGCCTTACGATCTCCAGAAAAGGTTTTATCTTGGGTTCTGCAAACAGCAGCTATGGCCCTTGTTCCATTACATGCTTCCCATGTGCCCAGAACATGGTGATCGCTTTGACCGTTTGCTTTGGCTAGCTTATGTTTCTGCAAATAAATTATTTGCTGACAAGGTTATGGAGGTTATCAACCCTGAGGAAGATTCTGTTTGGGTTCATGACTATCACTTAATGGTTCTTCCCACATTTTTGCGGAAGCGCTTTAATCGAGTTAAACTTGGATTTTTCCTACATAGCCCATTTCCGTCATCAGAAATCTATCGGACTTTACCAGTTCGAGATGAGATTCTCCGTGGTCTGTTAAACTGTGATTTAATTGGTTTTCATACATTTGATTATGCCCGCCATTTTCTATCATGCTGCAGCAGAATGTTGGGTCTGGATTATGAATCCAAGCGGGGACACATTGGACTAGATTATTTCGGCCGCACGGTATTTATCAAAATCTTGCCTGTTGGTATTCACATGGGTCGGCTGGAATCAGTGATGAACCTTCCATCTACATCTGCTAAAGTCAGAGAGATTAGACAACAATTCATGGGGAAGAAATTAATTCTTGGTATTGATGACATGGACATTTTTAAGGGTATAAGCCTGAAGCTTCTTGCTATTGAACAGCTTTTACGGCAACGCCCAGAGTTGCGAGGCAAAATAGTCTTGGTTCAAATAGTGAATCCTGCAAGGGGTTCAGGGAAAGATGTTCATGAAGCTCATAAGGAAGCCTACCTTGCAGCTGAAAGGATCAACAGAGTTTATGGTTCAACTGACTATAAACCAGTGATTTTGATTGATCGCCCCGTTCCTCGTTTTGAAAAGACTGCTTATTATGCTCTAGCAGAATGCTGCATAGTGAGTGCCGTAAGGGACGGTATGAATTTGGTTCCGTACAAGTATATTGTTTGCAGGCAAGGAACTCCGCATATGGATGAGGCCATGGGCTTAGAAGTTGGCTCTCCTCGGACAAGCATGCTTGTAGTGTCTGAGTTTATTGGTTGCTCGCCTTCTTTAAGTGGAGCCATCAGGGTTAACCCTTGGGACATTGATGCTGTTGCTGATTCCTTGGAACTGGCCATAACCATGCACGAGTCAGAGAAGTTGTTGCGGCATGAGAAGCACTATCGATATGTCAGTTCGCATGATATAGGGTATTGGTCTCGCAGTTTTATACAAGATTTAGACAGAGCATGTCAAGATCACTACACTAAGCGGTGCTGGGGAATTGGCTTGGGTCTGCGTTTTAGAGTTGTTTCTCTTTCTCCTGGGTTTAGGAAGTTAACAATTGACCACATTGTCTCAGCATATAAAAGAACTCATAGGAGGGCGATATTTTTGGACTATGATGGCACAATTATTTCACAAAGCTCTATTATTAAGACACCAAGTCCAGAAGTTATATCTGTTTTGACTACCCTTTGCAATGACCCTTGTAACACTGTGTTTGTTGTTAGTGGGAGGGGGAGAAGTTCTTTGGGCGAGTGGTTTGCCTCCTGTGAAATGTTGGGGATTGCCGCTGAACATGGATACTTTATAAGGTGGGGTGGAACTTCAGATTGGGAGGTCAGTGCGTTGTCTTCTGATGTGGATTGGATTAAAATTGTAGAACCAGTGATGAGATTATATACTGAAGCAACCGATGGCTCGTGCATAGAAACTAAAGAGAGTGCTTTGGTCTGGCACCATCAAGATGCCGATTCTGATTTTGGATCCTGTCAGGCAAAAGAATTACTGGACCATCTAGAAAACGTACTTGCCAATGAACCAGTCGTGGTTAAAAGGGGCCAGCATATTGTTGAAGTTAAGCCACAGGGAGTAAGCAAAGGGTTGGTCGCAGAGAAGGTTCTTTCGAGAATGGTGGATGGTGGAAGCCCACCTGATTTTGTGATGTGCATTGGGGATGATAGATCAGATGAAGATATGTTCGAGAGCATATTAAGCACCGTCTCCAGTCCTTCACTGCCATCAGCTCCTGAAATTTTTGCCTGCACTGTTGGGCGAAAGCCAAGCAAGGCAAAGTTTTATCTTGACGATACTTCAGACGTCGTGAAATTGCTGCAAGGCCTCGCCTCTTCTTCACGTCCAAGACCTCGGCAACCCACACAAACCCGTGTTTCTTTCGAGAGTGTTGTTTGA 2583 43.75 MAARSPTNFLDLASGDLLDIPRTPRSLPRVMTVPGIISELDDYGSNDGDSESSSVCRERKIIVANMLPLHAKKDGESSKWCFSLDEDSLLLQLKNGFSPETEVIYVGSLKVEIDPSDQEEVAQKLFENFHCVPTFLPYDLQKRFYLGFCKQQLWPLFHYMLPMCPEHGDRFDRLLWLAYVSANKLFADKVMEVINPEEDSVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTVFIKILPVGIHMGRLESVMNLPSTSAKVREIRQQFMGKKLILGIDDMDIFKGISLKLLAIEQLLRQRPELRGKIVLVQIVNPARGSGKDVHEAHKEAYLAAERINRVYGSTDYKPVILIDRPVPRFEKTAYYALAECCIVSAVRDGMNLVPYKYIVCRQGTPHMDEAMGLEVGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADSLELAITMHESEKLLRHEKHYRYVSSHDIGYWSRSFIQDLDRACQDHYTKRCWGIGLGLRFRVVSLSPGFRKLTIDHIVSAYKRTHRRAIFLDYDGTIISQSSIIKTPSPEVISVLTTLCNDPCNTVFVVSGRGRSSLGEWFASCEMLGIAAEHGYFIRWGGTSDWEVSALSSDVDWIKIVEPVMRLYTEATDGSCIETKESALVWHHQDADSDFGSCQAKELLDHLENVLANEPVVVKRGQHIVEVKPQGVSKGLVAEKVLSRMVDGGSPPDFVMCIGDDRSDEDMFESILSTVSSPSLPSAPEIFACTVGRKPSKAKFYLDDTSDVVKLLQGLASSSRPRPRQPTQTRVSFESVV 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58160433 58163198 - evm.model.ptg000006l.192 HCH1g1015 539034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1015 860 Gene3D Glycogen Phosphorylase B; 312 528 - -
HCH1g1015 860 MobiDBLite consensus disorder prediction 839 860 - -
HCH1g1015 860 MobiDBLite consensus disorder prediction 841 860 - -
HCH1g1015 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 311 - -
HCH1g1015 860 NCBIfam HAD-IIB family hydrolase 592 793 IPR006379 -
HCH1g1015 860 Gene3D Glycogen Phosphorylase B; 52 311 - -
HCH1g1015 860 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
HCH1g1015 860 SUPERFAMILY HAD-like 591 838 IPR036412 -
HCH1g1015 860 CDD HAD_TPP 592 833 - -
HCH1g1015 860 Pfam Trehalose-phosphatase 594 829 IPR003337 GO:0005992(InterPro)
HCH1g1015 860 Gene3D - 590 717 IPR023214 -
HCH1g1015 860 Gene3D - 719 851 IPR023214 -
HCH1g1015 860 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 720 851 - -
HCH1g1015 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
HCH1g1015 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
HCH1g1015 860 NCBIfam trehalose-phosphatase 589 838 IPR003337 GO:0005992(InterPro)
HCH1g1015 860 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH1g1015 860 CDD GT20_TPS 59 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH1g1015 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1015 HCH-Chr1:58160433 HCH6g1128 HCH-Chr6:45863708 0.00E+00 dispersed
HCH1g1015 HCH-Chr1:58160433 HCH8g1373 HCH-Chr8:48475020 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1015 K16055 - csv:101212688 1621.29