Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1017 ATGGATCTAGAAAGTGGGGTTTATGAAAAGAATGCAAAGAAAGATTCATGGAAGACAGTTTTAACTATGGCTTATCAGAGTCTTGGTGTTGTTTATGGAGATTTAGGAACTTCTCCTTTATATGTGTTTAAGAACACTTTTGCTGAAGATGATATTGAACATACAACAAGCAATGATGAGATTTATGGTGTTTTGTCATTTGTTTTTTGGACTTTAACAATTATACCGTTGCTTAAATATATATTTATTGTGCTTAAAGCTGATGATAATGGTGAGGGAGGGACTTTTGCTTTGTATTCGTTGCTGTGTCGCCATGCCAGAGTTAGCTCATTGCCTAATACTCAATTGGCTGATGCTGAGCTTGCTGAGTATAATAAGATGCATAGTAACAGCTTTGGTCCACCCCCTCAAGAGAGCTTTGGATTTAAACTGAAATCCGCTTTAGAAAAGCGTCGGATTTTGCAGAAGTTCTTACTTGTTTTGGCTTTGATTGGGACTTGTATGGTCATTGGAGATGGCATCCTTACTCCTGCTATTTCTGTTTTTTCGGCGGTTTCTGGCCTCGAGTATACGATGTCGAAAGAGCATCACCAATATGTAGAAGTCCCAATTGCGTGCATCATACTAATCGGCTTGTTTGCTCTTCAACATTATGGCACACACAGGATTGGATTCTTGTTTGCTCCCATCGTGACAGCTTGGCTATTGTGTATCAGCGCCACCGGCTTGTATAATATTATTCGCTGGAATCCAAGTATTTATAGAGCAATTTCTCCTCGCTACATGTTCCAATATATTAAGAAAACACAAAGAGGAGGTTGGATGTCTCTTGGTGGAATTTTGTTGTGCATTACTGGTTCAGAGGCGATGTTTGCTGACCTTGGGCATTTTTCACAATTGTCAATTAAGATTGCTTTCACTTTTATGGTTTATCCGTCTCTACTCCTAGCATACATGGGGCAAGCTGCATATCTATCTAAAAACCATCAAATTCCAAATGATTATCAAATTGGGTTTTATATATCTGTACCTGAGAAACTGAGGTGGCCTGTTCTGGTAATTGCTGTACTTGCTGCAGTAGTAGGAAGTCAGGCTATAATCACTGGAACTTTCTCAATTATAAAGCAGTGCTCTGCTTTGGGTTGCTTTCCACGAGTTAAAATAGTCCACACGTCCTCAAAAGTTCACGGTCAGATTTATATCCCAGAGGTTAATTGGATTTTGATGCTGTTGTGCTTGGCTGTTACCATAGGTTTCAGAGACACACAGCGCTTGGGTCATGCTTCAGGTTTGGCAGTGATCACTGTTATGCTGGTTACTACATGCTTGATGTCTCTGGTTATTGTCCTATGCTGGCACCGTAGTATATTTCTTGCAATAGGATTCATCTTCTTCTTTGGCACAATTGAATCTCTCTACTTCTCAGCTTCTCTAATCAAATTTCTTGAAGGAGCTTGGGTTCCCATCGCAATTGCTCTTGTATTCTTGATTGTTATGTATGTCTGGCACTACGGCACTCTTAAGAGGTACGATTTTGACGTCCAAAACAAGGTTTCTATTAACTGGCTGCTTGGCTTGGGTCCCAGCCTAGGCATTGTAAGAGTCCGTGGGATTGGTATCATAGAGACAGAGCTCGTCTCGGGAATCCCTGCTATATTTTCCCACTTTGTCACAAATATACCTGCCTTCCATCAGGTTCTTGTTTTCCTTTGCATCAAATATGTCCCAATGCCACATGTTAAACCAGAGGAACGGTTTCTAATAGGTCGTATTGGTCCGGGTGAATACAGACTCTACCGATGCATAGTGCGATATGGTTATAGAGATGTGCACAAGGATGATGTGGGGTTTGAGAATGATCTCGTACGCAGCATAGCAGAGTTCATAAGGTCAGGGAGTGTGGAATCTCTTGATTCCAAGCAGGATTGTGAAGAGGACGATGGGAAAATGACAGTCGTTGGGACATCCTCTACCCGCGAAGATGGTATCCAAATGTCCGCAGATGATACCGATGGAGACTCGGAGGAATTCGACAGGACAACCTCAGAAGTGAGGGAAATCAGGTCACCCGCAGCAGGCAGCCAAATAAGGAAGAGAGTGCGGTTCATCCTACCCGAGAGCCCGAAAATCAACACGGACGCAATGGCAGAACTAGGAGATCTGATGGAAGCAAGAGAAGGAGGCGTCGCATACATATTGGGACGGTCACACATGAAAGCGAAACGAGGTTCAAGCATAATGAAGAAGCTATCCATCAACTACATTTACGAATTCTTGAGAAAAAACAGCAGAGAAGCTAGTTACCCTGTAGGATTATCACATTCATCAACACTAGAAGTGGGAATGATGTATCTCGTTTAG 2361 42.1 MDLESGVYEKNAKKDSWKTVLTMAYQSLGVVYGDLGTSPLYVFKNTFAEDDIEHTTSNDEIYGVLSFVFWTLTIIPLLKYIFIVLKADDNGEGGTFALYSLLCRHARVSSLPNTQLADAELAEYNKMHSNSFGPPPQESFGFKLKSALEKRRILQKFLLVLALIGTCMVIGDGILTPAISVFSAVSGLEYTMSKEHHQYVEVPIACIILIGLFALQHYGTHRIGFLFAPIVTAWLLCISATGLYNIIRWNPSIYRAISPRYMFQYIKKTQRGGWMSLGGILLCITGSEAMFADLGHFSQLSIKIAFTFMVYPSLLLAYMGQAAYLSKNHQIPNDYQIGFYISVPEKLRWPVLVIAVLAAVVGSQAIITGTFSIIKQCSALGCFPRVKIVHTSSKVHGQIYIPEVNWILMLLCLAVTIGFRDTQRLGHASGLAVITVMLVTTCLMSLVIVLCWHRSIFLAIGFIFFFGTIESLYFSASLIKFLEGAWVPIAIALVFLIVMYVWHYGTLKRYDFDVQNKVSINWLLGLGPSLGIVRVRGIGIIETELVSGIPAIFSHFVTNIPAFHQVLVFLCIKYVPMPHVKPEERFLIGRIGPGEYRLYRCIVRYGYRDVHKDDVGFENDLVRSIAEFIRSGSVESLDSKQDCEEDDGKMTVVGTSSTREDGIQMSADDTDGDSEEFDRTTSEVREIRSPAAGSQIRKRVRFILPESPKINTDAMAELGDLMEAREGGVAYILGRSHMKAKRGSSIMKKLSINYIYEFLRKNSREASYPVGLSHSSTLEVGMMYLV 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58176627 58180774 - evm.model.ptg000006l.190 HCH1g1017 539036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1017 786 MobiDBLite consensus disorder prediction 662 684 - -
HCH1g1017 786 NCBIfam potassium uptake protein 23 784 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
HCH1g1017 786 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 13 785 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
HCH1g1017 786 Pfam K+ potassium transporter C-terminal domain 538 783 IPR053952 -
HCH1g1017 786 Pfam K+ potassium transporter integral membrane domain 24 523 IPR053951 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1017 HCH-Chr1:58176627 HCH9g0012 HCH-Chr9:101601 1.50E-246 dispersed
HCH1g1017 HCH-Chr1:58176627 HCH13g0807 HCH-Chr13:7797032 0.00E+00 wgd
HCH1g1017 HCH-Chr1:58176627 HCH4g0006 HCH-Chr4:63819 0.00E+00 wgd
HCH1g1017 HCH-Chr1:58176627 HCH9g0158 HCH-Chr9:943132 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1017 K03549 - csv:101212925 1295.8