Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1033 ATGTCTTCTTCAAACGAGACTTCTCCTGTATCTGATTCAAGTTTGCCACCTACATCTATGGTTTCTTCTCCGTTGCCACCGGTCGATTCATCAACGAGTGGCGGCAATAACTCGAATTTTAATCAATTGATTTCGTCGCCAAATTCTACATCTACATCTCCACCGGTTAACAATGATGATCCACCGGCTTCACCACCTCCCACTTCAAACCCGTCATTGCCACCGCCGTCACCGCCACCCCCTTCAACCTCACCACCCCCTCAATCGATACCTCCACCATCTCCTCATCCTTCTACTTCTCCTCCACCGCCTTCTCCATCAGCAGTTTTATCATCACCACCTCCACCGTCATCTAGTGGCGACAATGCACATGCTTCTCCTCCACCGGTACAGATCCATACTACCCCTCCTAATCAAGGCTCTCCACCGATACCGATAGGAAGCCCGCCGCCTCCAATTCCTCTCGACATCCCTGCTCCAACAGCCAATTTGCCAGGTTCTGAAACAGCTACTAATCACCCACCTCCTCATGAACCAATAACCCTTTCTCCACCAATTGGAATCCCAATTGTGATATATTCCCCAGGAGCAACTCCTGAGACAACTAATCCAATTCTGGCCCCACCTGCTCTAACAACAAATCCAACTCCAACTCCAAAATCAGATTTTAGTTTTCATCCCCCTCCGACAATGACATCGCCTCGTACGACAACACCTTCTTCTAACTCTAAACCAGAAAGATCATCATCATCATCAGGGGAGTCTCATACACCATCAGGATCAAGTACTAAAAATAACGAAACCGCAGTTGGTGTTGCAGTGGCAGGAGTTTTTGTACTTGCTTTGATTGCAGCCATTTTTATGTTCTCAAGGAGGAAGAAAAGAAGGGTAGATATATATGAACCACCGTATTTGCCCCCTAATAACTTTGGTGGGAAATCAGATAGAAATTACTATCCAAATAACCACACAGGCAATTCTGGTCCAGCAGAAGGCTTTTATACTCAGGTCCCTCATACTCCTATAGGAAACAGCTTTGGTAGTCAGAAAGGAACTGGATACAACAGTGGCGGCGGGAATGATTCCGGTGTGATAAACACTGCTAAATCCTTCTTCACCTATGAGGAATTGATGGAAATTACGTCTGGATTTTCCAGACAAAACATTCTCGGCGAAGGCGGATTTGGATGTGTTTACAAGGGTTGGCTTCCTGATGGGAAGCCAGTGGCTGTCAAGCAACTTAAGGCAGGTAGTGGACAGGGGGAGAGGGAATTCAAGGCGGAGGTTGAGATTATTAGCCGGGTTCATCATCGATATTTGGTGTCTTTAGTAGGCTACTGCATCTCTGATAATCATAGATTGCTCATCTATGAATATGTTCCCAATAAGACCCTTGAACATCATCTGCATTGCATTAATGGACCAGTGTTGCATTGGGCCAACAGACTCAAGATCGCTGTAGGAGCTGCAAAGGGTTTAGCATATTTGCACGAAGACTGCCATCCAAAAATTATTCACAGAGACATTAAGACAGCAAATATTTTGTTGGATGATGCTTTCGAGGCACAGGTTGCTGATTTTGGACTTGCCAAACTAACGAACGATACATCGACCCACGTATCGACTCGTGTCATGGGGACATTTGGGTATATGGCACCTGAGTATGCATCAAGTGGGAAATTAACGGACAGATCCGATGTGTTCTCGTTTGGAGTTGTGCTTCTAGAGCTTATCACTGGGCGTAAACCCGTTGATCCAACTCAGCCTTTAGGGGATGAGAGTTTAGTTGAATGGGCTCGTCCGCTCCTCATTCGCGCCCTTGAAACTGGAGAATTTGGCGAATTGGTAGATCAGCGGCTTGGAAAGCAGTATGTGGAAAGTGAACTGTTCAGAATGATTGAAGCAGCAGCTGCTTGTGTTCGTCATTCGGCCCCCAAACGGCCTCGCATGGTTCAGGTGGTAAGGGCACTAGACACTGAAAGTGAAATGTCCGACCTCTCTAATGGTGTCAAATACGGTCAGAGTACTGTTTATGATTCTGGACAATACAATCAAGATATTTCAAAATTCAGGAGAATGGCGCTTGGCAGTGACGAAAGCTCCGAATATGACAATTACAGCAGCGGTTTGAATTCCAGAGAAATGCCTACAAGTCGAGACTCGTGGAATTTTCAAGATAACTCCAGTTATGAATCCGAAACTCGAGCCTTTAATGCACGTAGTGGCACAACACAAAACAACCATAGCTCTCGACGATTCTAA 2262 45.89 MSSSNETSPVSDSSLPPTSMVSSPLPPVDSSTSGGNNSNFNQLISSPNSTSTSPPVNNDDPPASPPPTSNPSLPPPSPPPPSTSPPPQSIPPPSPHPSTSPPPPSPSAVLSSPPPPSSSGDNAHASPPPVQIHTTPPNQGSPPIPIGSPPPPIPLDIPAPTANLPGSETATNHPPPHEPITLSPPIGIPIVIYSPGATPETTNPILAPPALTTNPTPTPKSDFSFHPPPTMTSPRTTTPSSNSKPERSSSSSGESHTPSGSSTKNNETAVGVAVAGVFVLALIAAIFMFSRRKKRRVDIYEPPYLPPNNFGGKSDRNYYPNNHTGNSGPAEGFYTQVPHTPIGNSFGSQKGTGYNSGGGNDSGVINTAKSFFTYEELMEITSGFSRQNILGEGGFGCVYKGWLPDGKPVAVKQLKAGSGQGEREFKAEVEIISRVHHRYLVSLVGYCISDNHRLLIYEYVPNKTLEHHLHCINGPVLHWANRLKIAVGAAKGLAYLHEDCHPKIIHRDIKTANILLDDAFEAQVADFGLAKLTNDTSTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPLLIRALETGEFGELVDQRLGKQYVESELFRMIEAAAACVRHSAPKRPRMVQVVRALDTESEMSDLSNGVKYGQSTVYDSGQYNQDISKFRRMALGSDESSEYDNYSSGLNSREMPTSRDSWNFQDNSSYESETRAFNARSGTTQNNHSSRRF 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58269519 58272645 + evm.model.ptg000006l.174 HCH1g1033 539052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1033 753 MobiDBLite consensus disorder prediction 700 753 - -
HCH1g1033 753 MobiDBLite consensus disorder prediction 114 129 - -
HCH1g1033 753 MobiDBLite consensus disorder prediction 1 57 - -
HCH1g1033 753 SMART serkin_6 384 657 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g1033 753 MobiDBLite consensus disorder prediction 699 753 - -
HCH1g1033 753 ProSiteProfiles Protein kinase domain profile. 384 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g1033 753 Pfam Protein tyrosine and serine/threonine kinase 387 657 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g1033 753 FunFam Proline-rich receptor-like protein kinase PERK8 358 459 - -
HCH1g1033 753 Gene3D Phosphorylase Kinase; domain 1 355 459 - -
HCH1g1033 753 CDD STKc_IRAK 390 658 - -
HCH1g1033 753 MobiDBLite consensus disorder prediction 216 266 - -
HCH1g1033 753 SUPERFAMILY Protein kinase-like (PK-like) 364 657 IPR011009 -
HCH1g1033 753 FunFam proline-rich receptor-like protein kinase PERK8 460 672 - -
HCH1g1033 753 MobiDBLite consensus disorder prediction 58 113 - -
HCH1g1033 753 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 233 693 IPR047117 -
HCH1g1033 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g1033 753 MobiDBLite consensus disorder prediction 130 159 - -
HCH1g1033 753 Gene3D Transferase(Phosphotransferase) domain 1 460 676 - -
HCH1g1033 753 MobiDBLite consensus disorder prediction 1 266 - -
HCH1g1033 753 ProSitePatterns Protein kinases ATP-binding region signature. 390 412 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0465 HCH-Chr10:3807132 HCH1g1033 HCH-Chr1:58269519 1.40E-128 dispersed
HCH1g0825 HCH-Chr1:56890772 HCH1g1033 HCH-Chr1:58269519 8.20E-129 dispersed
HCH1g1033 HCH-Chr1:58269519 HCH8g0750 HCH-Chr8:44129632 2.50E-126 dispersed
HCH1g1033 HCH-Chr1:58269519 HCH13g0628 HCH-Chr13:4892828 1.00E-143 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81297 PF07714 PK_Tyr_Ser-Thr 7.50E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1033 - - - 0.0