Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g1033 | ATGTCTTCTTCAAACGAGACTTCTCCTGTATCTGATTCAAGTTTGCCACCTACATCTATGGTTTCTTCTCCGTTGCCACCGGTCGATTCATCAACGAGTGGCGGCAATAACTCGAATTTTAATCAATTGATTTCGTCGCCAAATTCTACATCTACATCTCCACCGGTTAACAATGATGATCCACCGGCTTCACCACCTCCCACTTCAAACCCGTCATTGCCACCGCCGTCACCGCCACCCCCTTCAACCTCACCACCCCCTCAATCGATACCTCCACCATCTCCTCATCCTTCTACTTCTCCTCCACCGCCTTCTCCATCAGCAGTTTTATCATCACCACCTCCACCGTCATCTAGTGGCGACAATGCACATGCTTCTCCTCCACCGGTACAGATCCATACTACCCCTCCTAATCAAGGCTCTCCACCGATACCGATAGGAAGCCCGCCGCCTCCAATTCCTCTCGACATCCCTGCTCCAACAGCCAATTTGCCAGGTTCTGAAACAGCTACTAATCACCCACCTCCTCATGAACCAATAACCCTTTCTCCACCAATTGGAATCCCAATTGTGATATATTCCCCAGGAGCAACTCCTGAGACAACTAATCCAATTCTGGCCCCACCTGCTCTAACAACAAATCCAACTCCAACTCCAAAATCAGATTTTAGTTTTCATCCCCCTCCGACAATGACATCGCCTCGTACGACAACACCTTCTTCTAACTCTAAACCAGAAAGATCATCATCATCATCAGGGGAGTCTCATACACCATCAGGATCAAGTACTAAAAATAACGAAACCGCAGTTGGTGTTGCAGTGGCAGGAGTTTTTGTACTTGCTTTGATTGCAGCCATTTTTATGTTCTCAAGGAGGAAGAAAAGAAGGGTAGATATATATGAACCACCGTATTTGCCCCCTAATAACTTTGGTGGGAAATCAGATAGAAATTACTATCCAAATAACCACACAGGCAATTCTGGTCCAGCAGAAGGCTTTTATACTCAGGTCCCTCATACTCCTATAGGAAACAGCTTTGGTAGTCAGAAAGGAACTGGATACAACAGTGGCGGCGGGAATGATTCCGGTGTGATAAACACTGCTAAATCCTTCTTCACCTATGAGGAATTGATGGAAATTACGTCTGGATTTTCCAGACAAAACATTCTCGGCGAAGGCGGATTTGGATGTGTTTACAAGGGTTGGCTTCCTGATGGGAAGCCAGTGGCTGTCAAGCAACTTAAGGCAGGTAGTGGACAGGGGGAGAGGGAATTCAAGGCGGAGGTTGAGATTATTAGCCGGGTTCATCATCGATATTTGGTGTCTTTAGTAGGCTACTGCATCTCTGATAATCATAGATTGCTCATCTATGAATATGTTCCCAATAAGACCCTTGAACATCATCTGCATTGCATTAATGGACCAGTGTTGCATTGGGCCAACAGACTCAAGATCGCTGTAGGAGCTGCAAAGGGTTTAGCATATTTGCACGAAGACTGCCATCCAAAAATTATTCACAGAGACATTAAGACAGCAAATATTTTGTTGGATGATGCTTTCGAGGCACAGGTTGCTGATTTTGGACTTGCCAAACTAACGAACGATACATCGACCCACGTATCGACTCGTGTCATGGGGACATTTGGGTATATGGCACCTGAGTATGCATCAAGTGGGAAATTAACGGACAGATCCGATGTGTTCTCGTTTGGAGTTGTGCTTCTAGAGCTTATCACTGGGCGTAAACCCGTTGATCCAACTCAGCCTTTAGGGGATGAGAGTTTAGTTGAATGGGCTCGTCCGCTCCTCATTCGCGCCCTTGAAACTGGAGAATTTGGCGAATTGGTAGATCAGCGGCTTGGAAAGCAGTATGTGGAAAGTGAACTGTTCAGAATGATTGAAGCAGCAGCTGCTTGTGTTCGTCATTCGGCCCCCAAACGGCCTCGCATGGTTCAGGTGGTAAGGGCACTAGACACTGAAAGTGAAATGTCCGACCTCTCTAATGGTGTCAAATACGGTCAGAGTACTGTTTATGATTCTGGACAATACAATCAAGATATTTCAAAATTCAGGAGAATGGCGCTTGGCAGTGACGAAAGCTCCGAATATGACAATTACAGCAGCGGTTTGAATTCCAGAGAAATGCCTACAAGTCGAGACTCGTGGAATTTTCAAGATAACTCCAGTTATGAATCCGAAACTCGAGCCTTTAATGCACGTAGTGGCACAACACAAAACAACCATAGCTCTCGACGATTCTAA | 2262 | 45.89 | MSSSNETSPVSDSSLPPTSMVSSPLPPVDSSTSGGNNSNFNQLISSPNSTSTSPPVNNDDPPASPPPTSNPSLPPPSPPPPSTSPPPQSIPPPSPHPSTSPPPPSPSAVLSSPPPPSSSGDNAHASPPPVQIHTTPPNQGSPPIPIGSPPPPIPLDIPAPTANLPGSETATNHPPPHEPITLSPPIGIPIVIYSPGATPETTNPILAPPALTTNPTPTPKSDFSFHPPPTMTSPRTTTPSSNSKPERSSSSSGESHTPSGSSTKNNETAVGVAVAGVFVLALIAAIFMFSRRKKRRVDIYEPPYLPPNNFGGKSDRNYYPNNHTGNSGPAEGFYTQVPHTPIGNSFGSQKGTGYNSGGGNDSGVINTAKSFFTYEELMEITSGFSRQNILGEGGFGCVYKGWLPDGKPVAVKQLKAGSGQGEREFKAEVEIISRVHHRYLVSLVGYCISDNHRLLIYEYVPNKTLEHHLHCINGPVLHWANRLKIAVGAAKGLAYLHEDCHPKIIHRDIKTANILLDDAFEAQVADFGLAKLTNDTSTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPLLIRALETGEFGELVDQRLGKQYVESELFRMIEAAAACVRHSAPKRPRMVQVVRALDTESEMSDLSNGVKYGQSTVYDSGQYNQDISKFRRMALGSDESSEYDNYSSGLNSREMPTSRDSWNFQDNSSYESETRAFNARSGTTQNNHSSRRF | 753 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 58269519 | 58272645 | + | evm.model.ptg000006l.174 | HCH1g1033 | 539052 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g1033 | 753 | MobiDBLite | consensus disorder prediction | 700 | 753 | - | - | |
HCH1g1033 | 753 | MobiDBLite | consensus disorder prediction | 114 | 129 | - | - | |
HCH1g1033 | 753 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
HCH1g1033 | 753 | SMART | serkin_6 | 384 | 657 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH1g1033 | 753 | MobiDBLite | consensus disorder prediction | 699 | 753 | - | - | |
HCH1g1033 | 753 | ProSiteProfiles | Protein kinase domain profile. | 384 | 663 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH1g1033 | 753 | Pfam | Protein tyrosine and serine/threonine kinase | 387 | 657 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH1g1033 | 753 | FunFam | Proline-rich receptor-like protein kinase PERK8 | 358 | 459 | - | - | |
HCH1g1033 | 753 | Gene3D | Phosphorylase Kinase; domain 1 | 355 | 459 | - | - | |
HCH1g1033 | 753 | CDD | STKc_IRAK | 390 | 658 | - | - | |
HCH1g1033 | 753 | MobiDBLite | consensus disorder prediction | 216 | 266 | - | - | |
HCH1g1033 | 753 | SUPERFAMILY | Protein kinase-like (PK-like) | 364 | 657 | IPR011009 | - | |
HCH1g1033 | 753 | FunFam | proline-rich receptor-like protein kinase PERK8 | 460 | 672 | - | - | |
HCH1g1033 | 753 | MobiDBLite | consensus disorder prediction | 58 | 113 | - | - | |
HCH1g1033 | 753 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 233 | 693 | IPR047117 | - | |
HCH1g1033 | 753 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 504 | 516 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH1g1033 | 753 | MobiDBLite | consensus disorder prediction | 130 | 159 | - | - | |
HCH1g1033 | 753 | Gene3D | Transferase(Phosphotransferase) domain 1 | 460 | 676 | - | - | |
HCH1g1033 | 753 | MobiDBLite | consensus disorder prediction | 1 | 266 | - | - | |
HCH1g1033 | 753 | ProSitePatterns | Protein kinases ATP-binding region signature. | 390 | 412 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0465 | HCH-Chr10:3807132 | HCH1g1033 | HCH-Chr1:58269519 | 1.40E-128 | dispersed | |
HCH1g0825 | HCH-Chr1:56890772 | HCH1g1033 | HCH-Chr1:58269519 | 8.20E-129 | dispersed | |
HCH1g1033 | HCH-Chr1:58269519 | HCH8g0750 | HCH-Chr8:44129632 | 2.50E-126 | dispersed | |
HCH1g1033 | HCH-Chr1:58269519 | HCH13g0628 | HCH-Chr13:4892828 | 1.00E-143 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81297 | PF07714 | PK_Tyr_Ser-Thr | 7.50E-45 | CL0016 | HCH | PK |
Pathway information
