Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g1044 | ATGAACAATCTCTTTGATATGCCTGAAAAGATTTGTTATGTCCAATGTGGAATATGCACCACCATATTATTGGTTAGTGTTCCATGCAGCAGTTTGTCGAAGGTGGTTACTGTGACGTGCGGCCATTGTGCAAGCCTCCTTTCTGTCAACATGATGAAAGCTACATTGGTTCCTCTTCATTTTCTGTCATCGCTCGCTCGCAACGCGCCGAGGGAAGTTTGTAGAGAAGCAAATGCACCAAAGTCCTTGGACCGTTTCAAAACGTCGAACTTGACGTTTTCTGAGTTCGAGGATAGTCGAGATGTGATTCCTATGAACCCTGTTGTAAACAAGCCTCCTGAGAAGCGACAACGCGCTCCATCGGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTGAAAATCCCCATATGACTCACAAGGAAGCCTTCAAAACTGCAGCTAAAAATTGGGCAAAACTTCCCTCCAATCCAGCGGAAAGGCGACACCGAAGCTGCGATCATATAACCGAGATTCAGTGA | 531 | 45.39 | MNNLFDMPEKICYVQCGICTTILLVSVPCSSLSKVVTVTCGHCASLLSVNMMKATLVPLHFLSSLARNAPREVCREANAPKSLDRFKTSNLTFSEFEDSRDVIPMNPVVNKPPEKRQRAPSAYNCFIKDEIRRLKAENPHMTHKEAFKTAAKNWAKLPSNPAERRHRSCDHITEIQ | 176 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 58316435 | 58317751 | - | evm.model.ptg000006l.163 | HCH1g1044 | 539063 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g1044 | 176 | MobiDBLite | consensus disorder prediction | 156 | 176 | - | - | |
HCH1g1044 | 176 | SUPERFAMILY | HMG-box | 108 | 159 | IPR036910 | - | |
HCH1g1044 | 176 | MobiDBLite | consensus disorder prediction | 159 | 176 | - | - | |
HCH1g1044 | 176 | Gene3D | High mobility group box domain | 107 | 166 | IPR036910 | - | |
HCH1g1044 | 176 | PANTHER | PROTEIN YABBY 6-RELATED | 8 | 160 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER) | |
HCH1g1044 | 176 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 116 | 165 | IPR009071 | - | |
HCH1g1044 | 176 | Pfam | YABBY protein | 7 | 159 | IPR006780 | GO:0007275(InterPro) | |
HCH1g1044 | 176 | CDD | HMG-box_SF | 118 | 166 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g1044 | HCH-Chr1:58316435 | HCH4g0030 | HCH-Chr4:194527 | 1.70E-38 | dispersed | |
HCH1g1044 | HCH-Chr1:58316435 | HCH5g0398 | HCH-Chr5:2620127 | 1.90E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33112 | PF04690 | YABBY | 6.30E-57 | CL0114 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH1g1044 | K25796 | - | csv:101211641 | 260.381 |