Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1044 ATGAACAATCTCTTTGATATGCCTGAAAAGATTTGTTATGTCCAATGTGGAATATGCACCACCATATTATTGGTTAGTGTTCCATGCAGCAGTTTGTCGAAGGTGGTTACTGTGACGTGCGGCCATTGTGCAAGCCTCCTTTCTGTCAACATGATGAAAGCTACATTGGTTCCTCTTCATTTTCTGTCATCGCTCGCTCGCAACGCGCCGAGGGAAGTTTGTAGAGAAGCAAATGCACCAAAGTCCTTGGACCGTTTCAAAACGTCGAACTTGACGTTTTCTGAGTTCGAGGATAGTCGAGATGTGATTCCTATGAACCCTGTTGTAAACAAGCCTCCTGAGAAGCGACAACGCGCTCCATCGGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTGAAAATCCCCATATGACTCACAAGGAAGCCTTCAAAACTGCAGCTAAAAATTGGGCAAAACTTCCCTCCAATCCAGCGGAAAGGCGACACCGAAGCTGCGATCATATAACCGAGATTCAGTGA 531 45.39 MNNLFDMPEKICYVQCGICTTILLVSVPCSSLSKVVTVTCGHCASLLSVNMMKATLVPLHFLSSLARNAPREVCREANAPKSLDRFKTSNLTFSEFEDSRDVIPMNPVVNKPPEKRQRAPSAYNCFIKDEIRRLKAENPHMTHKEAFKTAAKNWAKLPSNPAERRHRSCDHITEIQ 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58316435 58317751 - evm.model.ptg000006l.163 HCH1g1044 539063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1044 176 MobiDBLite consensus disorder prediction 156 176 - -
HCH1g1044 176 SUPERFAMILY HMG-box 108 159 IPR036910 -
HCH1g1044 176 MobiDBLite consensus disorder prediction 159 176 - -
HCH1g1044 176 Gene3D High mobility group box domain 107 166 IPR036910 -
HCH1g1044 176 PANTHER PROTEIN YABBY 6-RELATED 8 160 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER)
HCH1g1044 176 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 116 165 IPR009071 -
HCH1g1044 176 Pfam YABBY protein 7 159 IPR006780 GO:0007275(InterPro)
HCH1g1044 176 CDD HMG-box_SF 118 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1044 K25796 - - csv:101211641 260.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1044 HCH-Chr1:58316435 HCH4g0030 HCH-Chr4:194527 1.70E-38 dispersed
HCH1g1044 HCH-Chr1:58316435 HCH5g0398 HCH-Chr5:2620127 1.90E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0866 . 1 171 C2C2-YABBY Transcription Factor Family AT1G69180 57.1 5.5e-48 187.6
HCH5g0398 . 73 230 C2C2-YABBY Transcription Factor Family AT2G45190 62.0 9.5e-47 183.3
HCH2g1305 . 1 169 C2C2-YABBY Transcription Factor Family AT1G08465 65.7 1.7e-52 202.6
HCH10g0406 . 5 182 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 1.2e-42 169.9
HCH5g0398 . 30 220 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 2.1e-42 169.1
HCH6g0989 . 18 198 C2C2-YABBY Transcription Factor Family AT1G08465 52.4 1.3e-41 166.4
HCH8g0848 . 5 172 C2C2-YABBY Transcription Factor Family AT1G08465 53.2 1.3e-41 166.4
HCH5g0398 . 40 229 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 7.3e-52 200.7
HCH6g0989 . 28 219 C2C2-YABBY Transcription Factor Family AT4G00180 51.2 1.8e-42 169.5
HCH1g1044 . 1 170 C2C2-YABBY Transcription Factor Family AT1G23420 56.0 6.8e-39 157.9
HCH4g0030 . 2 181 C2C2-YABBY Transcription Factor Family AT1G23420 51.1 2.8e-37 152.5
HCH10g0406 . 8 173 C2C2-YABBY Transcription Factor Family AT2G26580 70.5 1.1e-60 229.6
HCH8g0848 . 7 172 C2C2-YABBY Transcription Factor Family AT2G26580 72.9 4.8e-59 224.2
HCH2g1305 . 1 170 C2C2-YABBY Transcription Factor Family AT2G26580 58.5 1.7e-48 189.1
HCH5g0398 . 30 194 C2C2-YABBY Transcription Factor Family AT2G26580 55.1 1.5e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012058 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33112 PF04690 YABBY 6.30E-57 CL0114 HCH TF