Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1044 ATGAACAATCTCTTTGATATGCCTGAAAAGATTTGTTATGTCCAATGTGGAATATGCACCACCATATTATTGGTTAGTGTTCCATGCAGCAGTTTGTCGAAGGTGGTTACTGTGACGTGCGGCCATTGTGCAAGCCTCCTTTCTGTCAACATGATGAAAGCTACATTGGTTCCTCTTCATTTTCTGTCATCGCTCGCTCGCAACGCGCCGAGGGAAGTTTGTAGAGAAGCAAATGCACCAAAGTCCTTGGACCGTTTCAAAACGTCGAACTTGACGTTTTCTGAGTTCGAGGATAGTCGAGATGTGATTCCTATGAACCCTGTTGTAAACAAGCCTCCTGAGAAGCGACAACGCGCTCCATCGGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTGAAAATCCCCATATGACTCACAAGGAAGCCTTCAAAACTGCAGCTAAAAATTGGGCAAAACTTCCCTCCAATCCAGCGGAAAGGCGACACCGAAGCTGCGATCATATAACCGAGATTCAGTGA 531 45.39 MNNLFDMPEKICYVQCGICTTILLVSVPCSSLSKVVTVTCGHCASLLSVNMMKATLVPLHFLSSLARNAPREVCREANAPKSLDRFKTSNLTFSEFEDSRDVIPMNPVVNKPPEKRQRAPSAYNCFIKDEIRRLKAENPHMTHKEAFKTAAKNWAKLPSNPAERRHRSCDHITEIQ 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58316435 58317751 - evm.model.ptg000006l.163 HCH1g1044 539063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1044 176 MobiDBLite consensus disorder prediction 156 176 - -
HCH1g1044 176 SUPERFAMILY HMG-box 108 159 IPR036910 -
HCH1g1044 176 MobiDBLite consensus disorder prediction 159 176 - -
HCH1g1044 176 Gene3D High mobility group box domain 107 166 IPR036910 -
HCH1g1044 176 PANTHER PROTEIN YABBY 6-RELATED 8 160 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER)
HCH1g1044 176 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 116 165 IPR009071 -
HCH1g1044 176 Pfam YABBY protein 7 159 IPR006780 GO:0007275(InterPro)
HCH1g1044 176 CDD HMG-box_SF 118 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1044 HCH-Chr1:58316435 HCH4g0030 HCH-Chr4:194527 1.70E-38 dispersed
HCH1g1044 HCH-Chr1:58316435 HCH5g0398 HCH-Chr5:2620127 1.90E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33112 PF04690 YABBY 6.30E-57 CL0114 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1044 K25796 - csv:101211641 260.381