Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g1049 ATGGAAGAAATGTACGGACTTCCATCCACGACTGATTACTCAGATAAGGCGTTGATGTCGCCGGATAATCTAATCCTTCCACCGGATTATCACTCTTTACTTGTTTCCGGAGACTTCCGTGATCGGATTCCCGTACTTTTCGGATCCAACGAACTACTTTCCGTTTCCGTTTCCGTTTCCGCCGCCGCTTCCGCTTTATCGGAAGCTGAAGCTGCCTCTATCACGCCTGAAATTCAACGTGATGAAGATTTTCTCCACGTCATCAAAGCTAAAATCTCTTCTCATCCTTCTTATCCTCGTTTACTCCAAGCTTATATTGACTGCCAAAAGGTAGGAGCACCGCCGGAGATTGCGTATTTGTTAGAGGAAATCCGGCAAGAAAATGACGTTTGTAACCGTCACGCCGTTACCACGTGCTTAGGAGTCGATCCTGAGCTTGATGAATTCATGGAAACGTACTGTGATATGTTGGTGAAATATAAATCAGATCTCAAAAGACCTTTTGATGAAGCGACGACGTTCTTGAATAAGATCGAGATTCAGTTAAGCAATCTCTGCAATGGTGCTTTCGCTAGAAGCCTTTCCGATGAAGGTGCGGTGTCATCAGAGGAAGAGTTAAGCGGAGGAGAGATGGAAGTGGAAACGGAGACTCAAATGAGAGGGGAGAGCAGAGATCTCAAAGACAAGCTCTTACGTAGGTTTGGGAGTCATATTAGTACCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCAAGGCAAACTCTACTCGAATGGTGGAATGTTCACTATAAATGGCCTTATCCTACGGAAGCAGATAAGGTTGCTTTGGCAGAAAGAACGGGACTTGATCAAAAGCAAATTAACAACTGGTTCATAAATCAACGAAAACGTCACTGGAAACCATCAGAAAATATGCAGTTCGAATCAATGGATGGGCTTTCTGGTGGATTTTTCTCAGAGGACTGA 987 43.47 MEEMYGLPSTTDYSDKALMSPDNLILPPDYHSLLVSGDFRDRIPVLFGSNELLSVSVSVSAAASALSEAEAASITPEIQRDEDFLHVIKAKISSHPSYPRLLQAYIDCQKVGAPPEIAYLLEEIRQENDVCNRHAVTTCLGVDPELDEFMETYCDMLVKYKSDLKRPFDEATTFLNKIEIQLSNLCNGAFARSLSDEGAVSSEEELSGGEMEVETETQMRGESRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQTLLEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENMQFESMDGLSGGFFSED 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58343048 58350052 + evm.model.ptg000006l.158 HCH1g1049 539068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g1049 328 ProSiteProfiles 'Homeobox' domain profile. 245 308 IPR001356 GO:0003677(InterPro)
HCH1g1049 328 Gene3D - 244 319 - -
HCH1g1049 328 CDD homeodomain 257 309 IPR001356 GO:0003677(InterPro)
HCH1g1049 328 Pfam KNOX1 domain 88 129 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH1g1049 328 SMART HOX_1 247 312 IPR001356 GO:0003677(InterPro)
HCH1g1049 328 SUPERFAMILY Homeodomain-like 246 321 IPR009057 -
HCH1g1049 328 FunFam Homeobox protein knotted-1-like 2 250 312 - -
HCH1g1049 328 Pfam Homeobox KN domain 265 304 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH1g1049 328 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 105 318 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH1g1049 328 SMART KNOX2_2 136 187 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH1g1049 328 SMART KNOX1_2 86 130 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH1g1049 328 Pfam KNOX2 domain 140 186 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH1g1049 328 ProSiteProfiles ELK domain profile. 225 245 IPR005539 GO:0003677(InterPro)
HCH1g1049 328 SMART ELK_2 225 246 IPR005539 GO:0003677(InterPro)
HCH1g1049 328 ProSitePatterns 'Homeobox' domain signature. 283 306 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH1g1049 328 Pfam ELK domain 225 246 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1049 HCH-Chr1:58343048 HCH4g0559 HCH-Chr4:3620026 7.30E-67 dispersed
HCH10g0931 HCH-Chr10:12431527 HCH1g1049 HCH-Chr1:58343048 6.70E-73 transposed
HCH1g1049 HCH-Chr1:58343048 HCH4g0036 HCH-Chr4:226759 5.00E-108 wgd
HCH1g1049 HCH-Chr1:58343048 HCH8g1394 HCH-Chr8:48650714 1.40E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33113 PF03791 KNOX2 1.00E-24 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g1049 - - - 0.0